Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04154 and BACOVA_04155 are separated by 81 nucleotides BACOVA_04155 and BACOVA_04156 are separated by 281 nucleotides
BACOVA_04154: BACOVA_04154 - histidine kinase, at 23,211 to 24,287
_04154
BACOVA_04155: BACOVA_04155 - hypothetical protein, at 24,369 to 25,778
_04155
BACOVA_04156: BACOVA_04156 - DNA binding domain, excisionase family, at 26,060 to 26,938
_04156
Position (kb) 24
25
26 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 23.444 kb on + strand, within BACOVA_04154 at 23.444 kb on + strand, within BACOVA_04154 at 23.447 kb on - strand, within BACOVA_04154 at 23.489 kb on + strand, within BACOVA_04154 at 23.518 kb on + strand, within BACOVA_04154 at 23.616 kb on + strand, within BACOVA_04154 at 23.703 kb on + strand, within BACOVA_04154 at 23.763 kb on + strand, within BACOVA_04154 at 23.874 kb on + strand, within BACOVA_04154 at 23.876 kb on + strand, within BACOVA_04154 at 23.877 kb on - strand, within BACOVA_04154 at 23.877 kb on - strand, within BACOVA_04154 at 23.878 kb on + strand, within BACOVA_04154 at 23.891 kb on + strand, within BACOVA_04154 at 23.920 kb on + strand, within BACOVA_04154 at 23.946 kb on + strand, within BACOVA_04154 at 23.947 kb on - strand, within BACOVA_04154 at 23.950 kb on + strand, within BACOVA_04154 at 23.967 kb on + strand, within BACOVA_04154 at 23.991 kb on + strand, within BACOVA_04154 at 24.006 kb on + strand, within BACOVA_04154 at 24.006 kb on + strand, within BACOVA_04154 at 24.006 kb on + strand, within BACOVA_04154 at 24.006 kb on + strand, within BACOVA_04154 at 24.006 kb on + strand, within BACOVA_04154 at 24.007 kb on - strand, within BACOVA_04154 at 24.007 kb on - strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.010 kb on + strand, within BACOVA_04154 at 24.011 kb on - strand, within BACOVA_04154 at 24.015 kb on + strand, within BACOVA_04154 at 24.080 kb on + strand, within BACOVA_04154 at 24.094 kb on + strand, within BACOVA_04154 at 24.095 kb on - strand, within BACOVA_04154 at 24.112 kb on + strand, within BACOVA_04154 at 24.113 kb on - strand, within BACOVA_04154 at 24.130 kb on - strand, within BACOVA_04154 at 24.132 kb on - strand, within BACOVA_04154 at 24.151 kb on - strand, within BACOVA_04154 at 24.152 kb on + strand, within BACOVA_04154 at 24.155 kb on + strand, within BACOVA_04154 at 24.156 kb on - strand, within BACOVA_04154 at 24.174 kb on + strand, within BACOVA_04154 at 24.174 kb on + strand, within BACOVA_04154 at 24.191 kb on + strand at 24.191 kb on + strand at 24.192 kb on - strand at 24.194 kb on + strand at 24.194 kb on + strand at 24.194 kb on + strand at 24.195 kb on - strand at 24.244 kb on + strand at 24.249 kb on + strand at 24.249 kb on + strand at 24.249 kb on + strand at 24.260 kb on + strand at 24.260 kb on + strand at 24.274 kb on - strand at 24.274 kb on - strand at 24.314 kb on + strand at 24.358 kb on - strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.407 kb on + strand at 24.408 kb on - strand at 24.447 kb on - strand at 24.448 kb on + strand at 24.449 kb on - strand at 24.460 kb on + strand at 24.479 kb on + strand at 24.547 kb on + strand, within BACOVA_04155 at 24.547 kb on + strand, within BACOVA_04155 at 24.548 kb on - strand, within BACOVA_04155 at 24.572 kb on - strand, within BACOVA_04155 at 24.602 kb on - strand, within BACOVA_04155 at 24.702 kb on - strand, within BACOVA_04155 at 24.702 kb on - strand, within BACOVA_04155 at 24.702 kb on - strand, within BACOVA_04155 at 24.711 kb on - strand, within BACOVA_04155 at 24.713 kb on + strand, within BACOVA_04155 at 24.758 kb on - strand, within BACOVA_04155 at 24.776 kb on + strand, within BACOVA_04155 at 24.781 kb on + strand, within BACOVA_04155 at 24.782 kb on - strand, within BACOVA_04155 at 24.838 kb on + strand, within BACOVA_04155 at 24.887 kb on + strand, within BACOVA_04155 at 24.888 kb on - strand, within BACOVA_04155 at 24.888 kb on - strand, within BACOVA_04155 at 24.906 kb on - strand, within BACOVA_04155 at 24.949 kb on - strand, within BACOVA_04155 at 24.955 kb on + strand, within BACOVA_04155 at 24.956 kb on - strand, within BACOVA_04155 at 24.998 kb on + strand, within BACOVA_04155 at 25.000 kb on + strand, within BACOVA_04155 at 25.000 kb on + strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.001 kb on - strand, within BACOVA_04155 at 25.008 kb on + strand, within BACOVA_04155 at 25.110 kb on - strand, within BACOVA_04155 at 25.129 kb on + strand, within BACOVA_04155 at 25.156 kb on + strand, within BACOVA_04155 at 25.157 kb on - strand, within BACOVA_04155 at 25.160 kb on + strand, within BACOVA_04155 at 25.161 kb on - strand, within BACOVA_04155 at 25.166 kb on - strand, within BACOVA_04155 at 25.235 kb on + strand, within BACOVA_04155 at 25.235 kb on + strand, within BACOVA_04155 at 25.239 kb on - strand, within BACOVA_04155 at 25.300 kb on - strand, within BACOVA_04155 at 25.311 kb on - strand, within BACOVA_04155 at 25.316 kb on - strand, within BACOVA_04155 at 25.378 kb on + strand, within BACOVA_04155 at 25.419 kb on - strand, within BACOVA_04155 at 25.419 kb on - strand, within BACOVA_04155 at 25.419 kb on - strand, within BACOVA_04155 at 25.420 kb on + strand, within BACOVA_04155 at 25.461 kb on - strand, within BACOVA_04155 at 25.494 kb on - strand, within BACOVA_04155 at 25.517 kb on - strand, within BACOVA_04155 at 25.573 kb on + strand, within BACOVA_04155 at 25.573 kb on + strand, within BACOVA_04155 at 25.574 kb on - strand, within BACOVA_04155 at 25.574 kb on - strand, within BACOVA_04155 at 25.574 kb on - strand, within BACOVA_04155 at 25.578 kb on - strand, within BACOVA_04155 at 25.649 kb on + strand at 25.651 kb on + strand at 25.651 kb on + strand at 25.685 kb on + strand at 25.685 kb on + strand at 25.685 kb on + strand at 25.686 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.814 kb on + strand at 25.815 kb on - strand at 25.817 kb on - strand at 25.880 kb on - strand at 25.889 kb on + strand at 25.899 kb on + strand at 25.919 kb on - strand at 26.025 kb on - strand at 26.025 kb on - strand at 26.025 kb on - strand at 26.025 kb on - strand at 26.067 kb on + strand at 26.067 kb on + strand at 26.068 kb on - strand at 26.131 kb on + strand at 26.211 kb on + strand, within BACOVA_04156 at 26.212 kb on - strand, within BACOVA_04156 at 26.291 kb on + strand, within BACOVA_04156 at 26.291 kb on + strand, within BACOVA_04156 at 26.299 kb on + strand, within BACOVA_04156 at 26.299 kb on + strand, within BACOVA_04156 at 26.380 kb on - strand, within BACOVA_04156 at 26.417 kb on - strand, within BACOVA_04156 at 26.417 kb on - strand, within BACOVA_04156 at 26.445 kb on - strand, within BACOVA_04156 at 26.445 kb on - strand, within BACOVA_04156 at 26.501 kb on + strand, within BACOVA_04156 at 26.552 kb on + strand, within BACOVA_04156 at 26.554 kb on + strand, within BACOVA_04156 at 26.555 kb on - strand, within BACOVA_04156 at 26.555 kb on - strand, within BACOVA_04156 at 26.555 kb on - strand, within BACOVA_04156 at 26.588 kb on + strand, within BACOVA_04156 at 26.632 kb on + strand, within BACOVA_04156 at 26.633 kb on - strand, within BACOVA_04156 at 26.651 kb on - strand, within BACOVA_04156 at 26.693 kb on - strand, within BACOVA_04156
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 23,444 + BACOVA_04154 0.22 -1.0 23,444 + BACOVA_04154 0.22 +1.4 23,447 - BACOVA_04154 0.22 -0.0 23,489 + BACOVA_04154 0.26 +0.1 23,518 + BACOVA_04154 0.29 +0.6 23,616 + BACOVA_04154 0.38 -1.0 23,703 + BACOVA_04154 0.46 -0.0 23,763 + BACOVA_04154 0.51 -0.9 23,874 + BACOVA_04154 0.62 +1.4 23,876 + BACOVA_04154 0.62 +0.7 23,877 - BACOVA_04154 0.62 -0.6 23,877 - BACOVA_04154 0.62 -0.2 23,878 + BACOVA_04154 0.62 -1.2 23,891 + BACOVA_04154 0.63 +0.2 23,920 + BACOVA_04154 0.66 -0.0 23,946 + BACOVA_04154 0.68 +1.1 23,947 - BACOVA_04154 0.68 -0.6 23,950 + BACOVA_04154 0.69 -0.0 23,967 + BACOVA_04154 0.70 -1.0 23,991 + BACOVA_04154 0.72 -0.3 24,006 + BACOVA_04154 0.74 -2.2 24,006 + BACOVA_04154 0.74 +0.2 24,006 + BACOVA_04154 0.74 -0.4 24,006 + BACOVA_04154 0.74 +1.3 24,006 + BACOVA_04154 0.74 -0.7 24,007 - BACOVA_04154 0.74 -1.6 24,007 - BACOVA_04154 0.74 -1.9 24,010 + BACOVA_04154 0.74 +0.6 24,010 + BACOVA_04154 0.74 -0.0 24,010 + BACOVA_04154 0.74 +1.2 24,010 + BACOVA_04154 0.74 -1.0 24,010 + BACOVA_04154 0.74 +0.6 24,010 + BACOVA_04154 0.74 +1.0 24,011 - BACOVA_04154 0.74 -1.4 24,015 + BACOVA_04154 0.75 +0.2 24,080 + BACOVA_04154 0.81 -0.2 24,094 + BACOVA_04154 0.82 -0.4 24,095 - BACOVA_04154 0.82 -0.0 24,112 + BACOVA_04154 0.84 +0.0 24,113 - BACOVA_04154 0.84 -0.2 24,130 - BACOVA_04154 0.85 -0.5 24,132 - BACOVA_04154 0.86 +1.1 24,151 - BACOVA_04154 0.87 +0.5 24,152 + BACOVA_04154 0.87 +0.5 24,155 + BACOVA_04154 0.88 +0.1 24,156 - BACOVA_04154 0.88 -0.6 24,174 + BACOVA_04154 0.89 +1.0 24,174 + BACOVA_04154 0.89 -1.6 24,191 + +0.3 24,191 + +1.5 24,192 - -0.2 24,194 + +0.0 24,194 + +0.5 24,194 + -0.0 24,195 - +1.6 24,244 + -0.6 24,249 + +0.7 24,249 + +0.8 24,249 + +0.6 24,260 + +0.8 24,260 + +1.0 24,274 - +1.0 24,274 - -0.3 24,314 + +0.2 24,358 - -0.4 24,383 + -0.2 24,383 + -1.6 24,407 + -1.4 24,408 - -0.4 24,447 - -0.0 24,448 + +1.5 24,449 - -0.4 24,460 + -0.4 24,479 + -0.4 24,547 + BACOVA_04155 0.13 -0.4 24,547 + BACOVA_04155 0.13 +0.1 24,548 - BACOVA_04155 0.13 -1.4 24,572 - BACOVA_04155 0.14 -0.0 24,602 - BACOVA_04155 0.17 -1.0 24,702 - BACOVA_04155 0.24 -3.6 24,702 - BACOVA_04155 0.24 +0.4 24,702 - BACOVA_04155 0.24 -0.9 24,711 - BACOVA_04155 0.24 -0.5 24,713 + BACOVA_04155 0.24 +0.4 24,758 - BACOVA_04155 0.28 -0.4 24,776 + BACOVA_04155 0.29 +0.3 24,781 + BACOVA_04155 0.29 +0.5 24,782 - BACOVA_04155 0.29 -1.4 24,838 + BACOVA_04155 0.33 -0.2 24,887 + BACOVA_04155 0.37 -0.6 24,888 - BACOVA_04155 0.37 -0.7 24,888 - BACOVA_04155 0.37 +0.3 24,906 - BACOVA_04155 0.38 -0.6 24,949 - BACOVA_04155 0.41 +0.2 24,955 + BACOVA_04155 0.42 +0.0 24,956 - BACOVA_04155 0.42 -0.0 24,998 + BACOVA_04155 0.45 +0.6 25,000 + BACOVA_04155 0.45 -2.5 25,000 + BACOVA_04155 0.45 -0.5 25,001 - BACOVA_04155 0.45 -0.9 25,001 - BACOVA_04155 0.45 -0.2 25,001 - BACOVA_04155 0.45 +0.4 25,001 - BACOVA_04155 0.45 +0.2 25,001 - BACOVA_04155 0.45 -0.3 25,001 - BACOVA_04155 0.45 -0.8 25,008 + BACOVA_04155 0.45 +1.8 25,110 - BACOVA_04155 0.53 -0.3 25,129 + BACOVA_04155 0.54 -1.4 25,156 + BACOVA_04155 0.56 +0.3 25,157 - BACOVA_04155 0.56 -1.0 25,160 + BACOVA_04155 0.56 -0.5 25,161 - BACOVA_04155 0.56 +2.0 25,166 - BACOVA_04155 0.57 -1.4 25,235 + BACOVA_04155 0.61 -0.1 25,235 + BACOVA_04155 0.61 -1.0 25,239 - BACOVA_04155 0.62 -0.4 25,300 - BACOVA_04155 0.66 -1.0 25,311 - BACOVA_04155 0.67 -0.6 25,316 - BACOVA_04155 0.67 -1.0 25,378 + BACOVA_04155 0.72 +0.1 25,419 - BACOVA_04155 0.74 +1.0 25,419 - BACOVA_04155 0.74 -0.0 25,419 - BACOVA_04155 0.74 +1.0 25,420 + BACOVA_04155 0.75 -0.4 25,461 - BACOVA_04155 0.77 -0.2 25,494 - BACOVA_04155 0.80 +0.3 25,517 - BACOVA_04155 0.81 +0.1 25,573 + BACOVA_04155 0.85 -1.6 25,573 + BACOVA_04155 0.85 -1.0 25,574 - BACOVA_04155 0.85 -0.2 25,574 - BACOVA_04155 0.85 -0.3 25,574 - BACOVA_04155 0.85 -0.1 25,578 - BACOVA_04155 0.86 +1.3 25,649 + -0.0 25,651 + +0.3 25,651 + -0.6 25,685 + -1.1 25,685 + +0.7 25,685 + +0.1 25,686 - +0.7 25,688 - +0.3 25,688 - +1.0 25,688 - +0.6 25,688 - +0.0 25,814 + -0.3 25,815 - +0.5 25,817 - -1.3 25,880 - +1.6 25,889 + +0.7 25,899 + +0.2 25,919 - +0.3 26,025 - -0.5 26,025 - -1.4 26,025 - +1.4 26,025 - +0.5 26,067 + -1.7 26,067 + -0.6 26,068 - +0.9 26,131 + +1.5 26,211 + BACOVA_04156 0.17 +1.2 26,212 - BACOVA_04156 0.17 -0.2 26,291 + BACOVA_04156 0.26 -0.8 26,291 + BACOVA_04156 0.26 -5.5 26,299 + BACOVA_04156 0.27 -1.4 26,299 + BACOVA_04156 0.27 -0.4 26,380 - BACOVA_04156 0.36 -1.3 26,417 - BACOVA_04156 0.41 -0.3 26,417 - BACOVA_04156 0.41 +0.7 26,445 - BACOVA_04156 0.44 -2.4 26,445 - BACOVA_04156 0.44 +0.4 26,501 + BACOVA_04156 0.50 +0.5 26,552 + BACOVA_04156 0.56 -1.4 26,554 + BACOVA_04156 0.56 +0.2 26,555 - BACOVA_04156 0.56 -0.3 26,555 - BACOVA_04156 0.56 -0.9 26,555 - BACOVA_04156 0.56 +0.7 26,588 + BACOVA_04156 0.60 -0.0 26,632 + BACOVA_04156 0.65 -0.0 26,633 - BACOVA_04156 0.65 -0.5 26,651 - BACOVA_04156 0.67 -0.2 26,693 - BACOVA_04156 0.72 +0.3
Or see this region's nucleotide sequence