Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03211 and BACOVA_03212 are separated by 81 nucleotides BACOVA_03212 and BACOVA_03213 are separated by 13 nucleotides BACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides BACOVA_03214 and BACOVA_03216 are separated by 5 nucleotides BACOVA_03216 and BACOVA_03215 overlap by 357 nucleotides BACOVA_03215 and BACOVA_03217 are separated by 477 nucleotides
BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702
_03211
BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293
_03212
BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672
_03213
BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012
_03214
BACOVA_03216: BACOVA_03216 - hypothetical protein, at 304,018 to 304,527
_03216
BACOVA_03215: BACOVA_03215 - hypothetical protein, at 304,171 to 304,350
_03215
BACOVA_03217: BACOVA_03217 - putative DNA-binding protein, at 304,828 to 305,436
_03217
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.721 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.744 kb on - strand at 301.774 kb on - strand at 301.789 kb on + strand at 301.819 kb on - strand at 301.861 kb on + strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.873 kb on + strand, within BACOVA_03212 at 301.897 kb on + strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.903 kb on + strand, within BACOVA_03212 at 301.927 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.037 kb on + strand, within BACOVA_03212 at 302.065 kb on + strand, within BACOVA_03212 at 302.079 kb on + strand, within BACOVA_03212 at 302.083 kb on + strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.153 kb on + strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.178 kb on + strand, within BACOVA_03212 at 302.181 kb on + strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.186 kb on - strand, within BACOVA_03212 at 302.275 kb on - strand at 302.281 kb on - strand at 302.281 kb on - strand at 302.346 kb on + strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.352 kb on - strand, within BACOVA_03213 at 302.357 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.395 kb on - strand, within BACOVA_03213 at 302.411 kb on - strand, within BACOVA_03213 at 302.462 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.563 kb on + strand, within BACOVA_03213 at 302.564 kb on - strand, within BACOVA_03213 at 302.585 kb on + strand, within BACOVA_03213 at 302.587 kb on + strand, within BACOVA_03213 at 302.588 kb on - strand, within BACOVA_03213 at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.648 kb on - strand at 302.648 kb on - strand at 302.654 kb on + strand at 302.692 kb on - strand at 302.692 kb on - strand at 302.695 kb on + strand at 302.696 kb on - strand at 302.698 kb on + strand at 302.731 kb on + strand at 302.732 kb on - strand at 302.750 kb on + strand at 302.757 kb on + strand at 302.787 kb on + strand at 302.788 kb on - strand at 302.788 kb on - strand at 302.790 kb on + strand at 302.805 kb on - strand at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.904 kb on - strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.911 kb on - strand, within BACOVA_03214 at 302.921 kb on - strand, within BACOVA_03214 at 302.964 kb on + strand, within BACOVA_03214 at 302.972 kb on - strand, within BACOVA_03214 at 302.973 kb on + strand, within BACOVA_03214 at 303.004 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.050 kb on - strand, within BACOVA_03214 at 303.067 kb on - strand, within BACOVA_03214 at 303.089 kb on + strand, within BACOVA_03214 at 303.120 kb on - strand, within BACOVA_03214 at 303.175 kb on - strand, within BACOVA_03214 at 303.190 kb on + strand, within BACOVA_03214 at 303.210 kb on - strand, within BACOVA_03214 at 303.255 kb on - strand, within BACOVA_03214 at 303.281 kb on + strand, within BACOVA_03214 at 303.291 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.326 kb on + strand, within BACOVA_03214 at 303.362 kb on - strand, within BACOVA_03214 at 303.411 kb on - strand, within BACOVA_03214 at 303.435 kb on - strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.470 kb on + strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.498 kb on - strand, within BACOVA_03214 at 303.547 kb on - strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.672 kb on - strand, within BACOVA_03214 at 303.681 kb on + strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.723 kb on - strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.742 kb on - strand, within BACOVA_03214 at 303.756 kb on + strand, within BACOVA_03214 at 303.760 kb on - strand, within BACOVA_03214 at 303.795 kb on - strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.851 kb on - strand, within BACOVA_03214 at 303.853 kb on + strand, within BACOVA_03214 at 303.861 kb on - strand, within BACOVA_03214 at 303.944 kb on - strand at 303.972 kb on - strand at 303.987 kb on - strand at 304.039 kb on + strand at 304.049 kb on - strand at 304.053 kb on + strand at 304.053 kb on + strand at 304.054 kb on - strand at 304.054 kb on - strand at 304.055 kb on + strand at 304.056 kb on - strand at 304.056 kb on - strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.058 kb on - strand at 304.064 kb on - strand at 304.083 kb on + strand, within BACOVA_03216 at 304.092 kb on + strand, within BACOVA_03216 at 304.125 kb on + strand, within BACOVA_03216 at 304.134 kb on + strand, within BACOVA_03216 at 304.218 kb on + strand at 304.249 kb on - strand at 304.348 kb on + strand at 304.348 kb on + strand at 304.358 kb on + strand at 304.358 kb on + strand at 304.359 kb on - strand at 304.363 kb on + strand at 304.393 kb on - strand at 304.436 kb on - strand at 304.436 kb on - strand at 304.462 kb on + strand at 304.477 kb on - strand at 304.496 kb on - strand at 304.499 kb on + strand at 304.509 kb on + strand at 304.510 kb on - strand at 304.510 kb on - strand at 304.516 kb on + strand at 304.535 kb on + strand at 304.545 kb on + strand at 304.545 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.588 kb on - strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.603 kb on - strand at 304.645 kb on - strand at 304.653 kb on - strand at 304.678 kb on + strand at 304.678 kb on + strand at 304.682 kb on - strand at 304.691 kb on - strand at 304.714 kb on - strand at 304.733 kb on + strand at 304.787 kb on + strand at 304.787 kb on + strand at 304.798 kb on - strand at 304.892 kb on - strand, within BACOVA_03217 at 304.892 kb on - strand, within BACOVA_03217 at 304.942 kb on + strand, within BACOVA_03217 at 304.959 kb on + strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.961 kb on + strand, within BACOVA_03217 at 304.962 kb on - strand, within BACOVA_03217
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 301,721 + -0.2 301,743 + +0.3 301,743 + +0.4 301,743 + -0.0 301,744 - -0.6 301,774 - +0.8 301,789 + -0.4 301,819 - -1.0 301,861 + BACOVA_03212 0.15 +0.2 301,862 - BACOVA_03212 0.15 -0.2 301,862 - BACOVA_03212 0.15 -0.8 301,873 + BACOVA_03212 0.17 -0.7 301,897 + BACOVA_03212 0.22 -1.0 301,898 - BACOVA_03212 0.22 -1.2 301,898 - BACOVA_03212 0.22 -0.8 301,903 + BACOVA_03212 0.23 -0.1 301,927 + BACOVA_03212 0.28 +1.4 302,028 + BACOVA_03212 0.48 +0.5 302,028 + BACOVA_03212 0.48 -1.0 302,037 + BACOVA_03212 0.50 -0.5 302,065 + BACOVA_03212 0.55 +1.0 302,079 + BACOVA_03212 0.58 -0.3 302,083 + BACOVA_03212 0.59 -0.4 302,084 - BACOVA_03212 0.59 -0.1 302,084 - BACOVA_03212 0.59 -0.5 302,084 - BACOVA_03212 0.59 -0.0 302,084 - BACOVA_03212 0.59 -0.9 302,153 + BACOVA_03212 0.72 -0.6 302,162 - BACOVA_03212 0.74 +0.4 302,162 - BACOVA_03212 0.74 -0.2 302,178 + BACOVA_03212 0.77 +1.6 302,181 + BACOVA_03212 0.78 +1.4 302,182 - BACOVA_03212 0.78 -0.4 302,182 - BACOVA_03212 0.78 -0.3 302,185 + BACOVA_03212 0.79 +0.6 302,185 + BACOVA_03212 0.79 -0.8 302,186 - BACOVA_03212 0.79 -0.8 302,275 - +0.4 302,281 - -2.2 302,281 - -1.9 302,346 + BACOVA_03213 0.11 +0.2 302,347 - BACOVA_03213 0.11 +0.9 302,347 - BACOVA_03213 0.11 -0.4 302,351 + BACOVA_03213 0.12 -0.0 302,351 + BACOVA_03213 0.12 -0.4 302,352 - BACOVA_03213 0.12 +0.6 302,357 - BACOVA_03213 0.14 -1.0 302,368 - BACOVA_03213 0.17 -1.0 302,368 - BACOVA_03213 0.17 -1.5 302,395 - BACOVA_03213 0.24 +0.3 302,411 - BACOVA_03213 0.28 +1.7 302,462 + BACOVA_03213 0.42 -1.6 302,464 + BACOVA_03213 0.43 -0.6 302,464 + BACOVA_03213 0.43 -0.8 302,563 + BACOVA_03213 0.70 +0.1 302,564 - BACOVA_03213 0.70 -0.4 302,585 + BACOVA_03213 0.76 -0.4 302,587 + BACOVA_03213 0.77 +0.0 302,588 - BACOVA_03213 0.77 -0.6 302,647 + -0.0 302,647 + +1.3 302,647 + -0.6 302,647 + -0.0 302,648 - -3.3 302,648 - -0.2 302,654 + -0.3 302,692 - +1.0 302,692 - +0.4 302,695 + +0.2 302,696 - -0.6 302,698 + -0.6 302,731 + -0.8 302,732 - +1.2 302,750 + -0.1 302,757 + +0.3 302,787 + +1.0 302,788 - -1.8 302,788 - -0.0 302,790 + -0.6 302,805 - -0.5 302,894 - BACOVA_03214 0.15 -0.6 302,894 - BACOVA_03214 0.15 -0.1 302,894 - BACOVA_03214 0.15 -0.2 302,904 - BACOVA_03214 0.15 +0.2 302,905 + BACOVA_03214 0.15 +0.5 302,905 + BACOVA_03214 0.15 -1.6 302,911 - BACOVA_03214 0.16 +0.5 302,921 - BACOVA_03214 0.17 +1.0 302,964 + BACOVA_03214 0.20 -0.4 302,972 - BACOVA_03214 0.21 +0.9 302,973 + BACOVA_03214 0.21 -0.6 303,004 + BACOVA_03214 0.23 -1.2 303,049 + BACOVA_03214 0.26 +1.2 303,049 + BACOVA_03214 0.26 -1.3 303,050 - BACOVA_03214 0.27 +1.1 303,067 - BACOVA_03214 0.28 -0.5 303,089 + BACOVA_03214 0.30 +0.6 303,120 - BACOVA_03214 0.32 +0.1 303,175 - BACOVA_03214 0.36 -0.2 303,190 + BACOVA_03214 0.37 +0.1 303,210 - BACOVA_03214 0.39 +0.5 303,255 - BACOVA_03214 0.42 +1.5 303,281 + BACOVA_03214 0.44 -0.2 303,291 - BACOVA_03214 0.45 -0.3 303,314 - BACOVA_03214 0.47 +0.1 303,314 - BACOVA_03214 0.47 -0.6 303,324 - BACOVA_03214 0.47 +0.6 303,324 - BACOVA_03214 0.47 +0.4 303,324 - BACOVA_03214 0.47 +0.4 303,326 + BACOVA_03214 0.48 -1.3 303,362 - BACOVA_03214 0.50 +1.3 303,411 - BACOVA_03214 0.54 -1.2 303,435 - BACOVA_03214 0.56 -0.4 303,437 + BACOVA_03214 0.56 +0.2 303,437 + BACOVA_03214 0.56 +0.2 303,438 - BACOVA_03214 0.56 -1.6 303,438 - BACOVA_03214 0.56 -0.8 303,439 + BACOVA_03214 0.56 +0.1 303,439 + BACOVA_03214 0.56 -2.6 303,470 + BACOVA_03214 0.59 +1.4 303,473 - BACOVA_03214 0.59 -0.2 303,473 - BACOVA_03214 0.59 +0.6 303,498 - BACOVA_03214 0.61 -1.6 303,547 - BACOVA_03214 0.64 -0.6 303,615 + BACOVA_03214 0.70 -0.5 303,615 + BACOVA_03214 0.70 +0.2 303,615 + BACOVA_03214 0.70 +1.3 303,672 - BACOVA_03214 0.74 +0.0 303,681 + BACOVA_03214 0.75 +1.6 303,684 - BACOVA_03214 0.75 +1.2 303,684 - BACOVA_03214 0.75 -0.8 303,684 - BACOVA_03214 0.75 -0.8 303,723 - BACOVA_03214 0.78 +2.0 303,739 + BACOVA_03214 0.79 -1.6 303,739 + BACOVA_03214 0.79 -0.6 303,740 - BACOVA_03214 0.79 -0.3 303,740 - BACOVA_03214 0.79 +0.4 303,740 - BACOVA_03214 0.79 -1.5 303,741 + BACOVA_03214 0.79 +0.5 303,741 + BACOVA_03214 0.79 -0.6 303,742 - BACOVA_03214 0.79 +0.4 303,756 + BACOVA_03214 0.80 +0.8 303,760 - BACOVA_03214 0.81 -1.3 303,795 - BACOVA_03214 0.83 -0.0 303,850 + BACOVA_03214 0.88 +0.6 303,850 + BACOVA_03214 0.88 -2.8 303,851 - BACOVA_03214 0.88 -0.4 303,853 + BACOVA_03214 0.88 -1.6 303,861 - BACOVA_03214 0.88 -1.0 303,944 - +0.5 303,972 - +0.4 303,987 - +0.1 304,039 + +0.4 304,049 - -1.3 304,053 + -0.6 304,053 + -0.7 304,054 - +2.3 304,054 - +1.0 304,055 + -0.4 304,056 - -1.0 304,056 - +0.8 304,057 + +0.1 304,057 + -1.0 304,057 + -1.1 304,058 - +0.4 304,064 - -0.6 304,083 + BACOVA_03216 0.13 -0.3 304,092 + BACOVA_03216 0.15 -0.7 304,125 + BACOVA_03216 0.21 -1.2 304,134 + BACOVA_03216 0.23 -0.5 304,218 + -0.3 304,249 - +0.8 304,348 + +1.0 304,348 + +0.3 304,358 + -1.5 304,358 + +1.2 304,359 - +0.6 304,363 + +0.3 304,393 - +0.6 304,436 - -0.2 304,436 - +0.4 304,462 + -0.4 304,477 - +0.5 304,496 - +1.0 304,499 + -0.3 304,509 + +1.0 304,510 - -0.0 304,510 - -0.0 304,516 + -0.4 304,535 + +0.6 304,545 + +1.0 304,545 + +0.1 304,580 + -0.1 304,580 + +0.6 304,580 + -0.4 304,588 - -1.0 304,602 + +0.4 304,602 + -0.2 304,602 + +1.3 304,603 - +1.8 304,645 - +1.6 304,653 - +0.3 304,678 + -2.0 304,678 + +0.7 304,682 - -1.0 304,691 - -1.7 304,714 - -1.6 304,733 + +0.8 304,787 + +1.0 304,787 + -0.5 304,798 - -0.6 304,892 - BACOVA_03217 0.11 -1.2 304,892 - BACOVA_03217 0.11 -0.6 304,942 + BACOVA_03217 0.19 +0.7 304,959 + BACOVA_03217 0.22 -0.8 304,960 - BACOVA_03217 0.22 -0.7 304,960 - BACOVA_03217 0.22 +1.6 304,961 + BACOVA_03217 0.22 +0.5 304,962 - BACOVA_03217 0.22 -1.3
Or see this region's nucleotide sequence