Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03088

Experiment: Peptone 2.5 mg/mL (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03087 and BACOVA_03088 are separated by 167 nucleotidesBACOVA_03088 and BACOVA_03089 are separated by 150 nucleotides BACOVA_03087: BACOVA_03087 - hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type, at 161,731 to 163,368 _03087 BACOVA_03088: BACOVA_03088 - pectate lyase, at 163,536 to 164,630 _03088 BACOVA_03089: BACOVA_03089 - outer membrane efflux protein, at 164,781 to 166,121 _03089 Position (kb) 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 163.366 kb on + strandat 163.408 kb on + strandat 163.409 kb on - strandat 163.448 kb on + strandat 163.449 kb on - strandat 163.449 kb on - strandat 163.496 kb on + strandat 163.509 kb on + strandat 163.510 kb on - strandat 163.510 kb on - strandat 163.537 kb on + strandat 163.568 kb on - strandat 163.578 kb on + strandat 163.583 kb on + strandat 163.586 kb on + strandat 163.586 kb on + strandat 163.587 kb on - strandat 163.599 kb on - strandat 163.607 kb on + strandat 163.608 kb on - strandat 163.609 kb on + strandat 163.643 kb on + strandat 163.644 kb on - strandat 163.644 kb on - strandat 163.644 kb on - strandat 163.655 kb on + strand, within BACOVA_03088at 163.745 kb on + strand, within BACOVA_03088at 163.745 kb on + strand, within BACOVA_03088at 163.746 kb on - strand, within BACOVA_03088at 163.746 kb on - strand, within BACOVA_03088at 163.792 kb on - strand, within BACOVA_03088at 163.792 kb on - strand, within BACOVA_03088at 163.801 kb on - strand, within BACOVA_03088at 163.845 kb on + strand, within BACOVA_03088at 163.845 kb on + strand, within BACOVA_03088at 163.846 kb on - strand, within BACOVA_03088at 163.888 kb on - strand, within BACOVA_03088at 163.984 kb on - strand, within BACOVA_03088at 163.990 kb on - strand, within BACOVA_03088at 163.990 kb on - strand, within BACOVA_03088at 163.990 kb on - strand, within BACOVA_03088at 163.990 kb on - strand, within BACOVA_03088at 164.024 kb on + strand, within BACOVA_03088at 164.024 kb on + strand, within BACOVA_03088at 164.024 kb on + strand, within BACOVA_03088at 164.025 kb on - strand, within BACOVA_03088at 164.031 kb on + strand, within BACOVA_03088at 164.034 kb on - strand, within BACOVA_03088at 164.069 kb on + strand, within BACOVA_03088at 164.107 kb on + strand, within BACOVA_03088at 164.136 kb on + strand, within BACOVA_03088at 164.137 kb on - strand, within BACOVA_03088at 164.155 kb on + strand, within BACOVA_03088at 164.170 kb on + strand, within BACOVA_03088at 164.170 kb on + strand, within BACOVA_03088at 164.170 kb on + strand, within BACOVA_03088at 164.171 kb on - strand, within BACOVA_03088at 164.171 kb on - strand, within BACOVA_03088at 164.171 kb on - strand, within BACOVA_03088at 164.173 kb on + strand, within BACOVA_03088at 164.173 kb on + strand, within BACOVA_03088at 164.174 kb on - strand, within BACOVA_03088at 164.174 kb on - strand, within BACOVA_03088at 164.236 kb on + strand, within BACOVA_03088at 164.236 kb on + strand, within BACOVA_03088at 164.237 kb on - strand, within BACOVA_03088at 164.237 kb on - strand, within BACOVA_03088at 164.265 kb on - strand, within BACOVA_03088at 164.267 kb on - strand, within BACOVA_03088at 164.267 kb on - strand, within BACOVA_03088at 164.307 kb on - strand, within BACOVA_03088at 164.381 kb on + strand, within BACOVA_03088at 164.383 kb on + strand, within BACOVA_03088at 164.413 kb on + strand, within BACOVA_03088at 164.413 kb on + strand, within BACOVA_03088at 164.414 kb on - strand, within BACOVA_03088at 164.414 kb on - strand, within BACOVA_03088at 164.414 kb on - strand, within BACOVA_03088at 164.418 kb on - strand, within BACOVA_03088at 164.455 kb on - strand, within BACOVA_03088at 164.594 kb on + strandat 164.608 kb on - strandat 164.637 kb on - strandat 164.640 kb on - strandat 164.653 kb on - strandat 164.654 kb on + strandat 164.654 kb on + strandat 164.658 kb on - strandat 164.689 kb on + strandat 164.689 kb on + strandat 164.693 kb on + strandat 164.693 kb on + strandat 164.694 kb on - strandat 164.714 kb on + strandat 164.715 kb on - strandat 164.798 kb on + strandat 164.826 kb on + strandat 164.827 kb on - strandat 164.846 kb on + strandat 164.846 kb on + strandat 164.847 kb on - strandat 164.847 kb on - strandat 164.848 kb on + strandat 164.848 kb on + strandat 164.881 kb on - strandat 164.881 kb on - strandat 164.933 kb on + strand, within BACOVA_03089at 164.933 kb on + strand, within BACOVA_03089at 164.935 kb on + strand, within BACOVA_03089at 164.936 kb on - strand, within BACOVA_03089at 164.936 kb on - strand, within BACOVA_03089at 164.936 kb on - strand, within BACOVA_03089at 164.961 kb on - strand, within BACOVA_03089at 164.961 kb on - strand, within BACOVA_03089at 165.030 kb on + strand, within BACOVA_03089at 165.146 kb on + strand, within BACOVA_03089at 165.147 kb on - strand, within BACOVA_03089at 165.159 kb on + strand, within BACOVA_03089at 165.160 kb on - strand, within BACOVA_03089at 165.212 kb on - strand, within BACOVA_03089at 165.224 kb on + strand, within BACOVA_03089at 165.224 kb on + strand, within BACOVA_03089at 165.224 kb on + strand, within BACOVA_03089at 165.224 kb on + strand, within BACOVA_03089at 165.225 kb on - strand, within BACOVA_03089at 165.254 kb on - strand, within BACOVA_03089at 165.260 kb on - strand, within BACOVA_03089at 165.260 kb on - strand, within BACOVA_03089at 165.300 kb on + strand, within BACOVA_03089at 165.301 kb on - strand, within BACOVA_03089at 165.342 kb on + strand, within BACOVA_03089at 165.411 kb on - strand, within BACOVA_03089at 165.411 kb on - strand, within BACOVA_03089at 165.471 kb on + strand, within BACOVA_03089at 165.494 kb on - strand, within BACOVA_03089at 165.494 kb on - strand, within BACOVA_03089at 165.494 kb on - strand, within BACOVA_03089at 165.535 kb on + strand, within BACOVA_03089at 165.614 kb on - strand, within BACOVA_03089

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
remove
163,366 + -0.5
163,408 + -1.3
163,409 - -0.9
163,448 + -1.4
163,449 - -0.3
163,449 - +0.2
163,496 + +0.9
163,509 + -0.0
163,510 - +0.2
163,510 - +0.5
163,537 + +0.6
163,568 - +0.6
163,578 + +0.3
163,583 + -0.7
163,586 + -1.0
163,586 + +0.2
163,587 - +0.4
163,599 - +0.9
163,607 + -0.1
163,608 - -1.5
163,609 + -0.2
163,643 + -0.1
163,644 - +0.7
163,644 - -1.0
163,644 - +0.5
163,655 + BACOVA_03088 0.11 +0.1
163,745 + BACOVA_03088 0.19 +1.5
163,745 + BACOVA_03088 0.19 +1.6
163,746 - BACOVA_03088 0.19 +0.5
163,746 - BACOVA_03088 0.19 +0.1
163,792 - BACOVA_03088 0.23 -0.8
163,792 - BACOVA_03088 0.23 -0.6
163,801 - BACOVA_03088 0.24 +0.5
163,845 + BACOVA_03088 0.28 +0.1
163,845 + BACOVA_03088 0.28 +0.7
163,846 - BACOVA_03088 0.28 -1.0
163,888 - BACOVA_03088 0.32 -1.8
163,984 - BACOVA_03088 0.41 +0.5
163,990 - BACOVA_03088 0.41 -1.0
163,990 - BACOVA_03088 0.41 +1.4
163,990 - BACOVA_03088 0.41 +0.6
163,990 - BACOVA_03088 0.41 +0.2
164,024 + BACOVA_03088 0.45 +0.8
164,024 + BACOVA_03088 0.45 -0.6
164,024 + BACOVA_03088 0.45 -0.7
164,025 - BACOVA_03088 0.45 +0.9
164,031 + BACOVA_03088 0.45 +0.8
164,034 - BACOVA_03088 0.45 +0.1
164,069 + BACOVA_03088 0.49 +0.7
164,107 + BACOVA_03088 0.52 +1.3
164,136 + BACOVA_03088 0.55 -0.2
164,137 - BACOVA_03088 0.55 -0.0
164,155 + BACOVA_03088 0.57 +0.8
164,170 + BACOVA_03088 0.58 -1.2
164,170 + BACOVA_03088 0.58 -0.1
164,170 + BACOVA_03088 0.58 -1.0
164,171 - BACOVA_03088 0.58 +0.5
164,171 - BACOVA_03088 0.58 +0.8
164,171 - BACOVA_03088 0.58 -0.4
164,173 + BACOVA_03088 0.58 -1.1
164,173 + BACOVA_03088 0.58 -0.7
164,174 - BACOVA_03088 0.58 -0.4
164,174 - BACOVA_03088 0.58 -0.8
164,236 + BACOVA_03088 0.64 -1.2
164,236 + BACOVA_03088 0.64 -0.3
164,237 - BACOVA_03088 0.64 -0.6
164,237 - BACOVA_03088 0.64 +0.4
164,265 - BACOVA_03088 0.67 -0.1
164,267 - BACOVA_03088 0.67 +1.0
164,267 - BACOVA_03088 0.67 -1.6
164,307 - BACOVA_03088 0.70 -0.5
164,381 + BACOVA_03088 0.77 -0.1
164,383 + BACOVA_03088 0.77 +0.1
164,413 + BACOVA_03088 0.80 +0.3
164,413 + BACOVA_03088 0.80 +1.0
164,414 - BACOVA_03088 0.80 -0.1
164,414 - BACOVA_03088 0.80 +0.1
164,414 - BACOVA_03088 0.80 -0.3
164,418 - BACOVA_03088 0.81 -0.0
164,455 - BACOVA_03088 0.84 -1.1
164,594 + +0.2
164,608 - -0.2
164,637 - +0.2
164,640 - -1.0
164,653 - +0.3
164,654 + +0.4
164,654 + -1.0
164,658 - +0.4
164,689 + -0.0
164,689 + -0.3
164,693 + -0.4
164,693 + -1.4
164,694 - +0.4
164,714 + +0.5
164,715 - +0.3
164,798 + -0.3
164,826 + +2.0
164,827 - +0.7
164,846 + +1.2
164,846 + -0.0
164,847 - -3.5
164,847 - -0.2
164,848 + -0.5
164,848 + +0.8
164,881 - -0.7
164,881 - -0.7
164,933 + BACOVA_03089 0.11 -0.3
164,933 + BACOVA_03089 0.11 +0.3
164,935 + BACOVA_03089 0.11 +0.9
164,936 - BACOVA_03089 0.12 +0.4
164,936 - BACOVA_03089 0.12 -0.3
164,936 - BACOVA_03089 0.12 -1.6
164,961 - BACOVA_03089 0.13 +0.1
164,961 - BACOVA_03089 0.13 +1.2
165,030 + BACOVA_03089 0.19 +0.3
165,146 + BACOVA_03089 0.27 -1.2
165,147 - BACOVA_03089 0.27 +0.7
165,159 + BACOVA_03089 0.28 +0.4
165,160 - BACOVA_03089 0.28 -0.3
165,212 - BACOVA_03089 0.32 -1.3
165,224 + BACOVA_03089 0.33 +1.1
165,224 + BACOVA_03089 0.33 +0.7
165,224 + BACOVA_03089 0.33 +0.1
165,224 + BACOVA_03089 0.33 -0.8
165,225 - BACOVA_03089 0.33 +0.7
165,254 - BACOVA_03089 0.35 +0.6
165,260 - BACOVA_03089 0.36 -0.7
165,260 - BACOVA_03089 0.36 +0.7
165,300 + BACOVA_03089 0.39 +0.8
165,301 - BACOVA_03089 0.39 -1.0
165,342 + BACOVA_03089 0.42 -0.5
165,411 - BACOVA_03089 0.47 +0.3
165,411 - BACOVA_03089 0.47 -0.5
165,471 + BACOVA_03089 0.51 -1.0
165,494 - BACOVA_03089 0.53 +1.0
165,494 - BACOVA_03089 0.53 -0.4
165,494 - BACOVA_03089 0.53 +1.0
165,535 + BACOVA_03089 0.56 -0.9
165,614 - BACOVA_03089 0.62 +1.0

Or see this region's nucleotide sequence