Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02269 and BACOVA_02270 are separated by 88 nucleotides BACOVA_02270 and BACOVA_02271 are separated by 227 nucleotides BACOVA_02271 and BACOVA_02273 are separated by 166 nucleotides BACOVA_02273 and BACOVA_02272 overlap by 168 nucleotides BACOVA_02272 and BACOVA_02274 overlap by 4 nucleotides BACOVA_02274 and BACOVA_02275 are separated by 86 nucleotides
BACOVA_02269: BACOVA_02269 - hypothetical protein, at 47,399 to 48,892
_02269
BACOVA_02270: BACOVA_02270 - hypothetical protein, at 48,981 to 49,205
_02270
BACOVA_02271: BACOVA_02271 - hypothetical protein, at 49,433 to 49,576
_02271
BACOVA_02273: BACOVA_02273 - hypothetical protein, at 49,743 to 50,000
_02273
BACOVA_02272: BACOVA_02272 - hypothetical protein, at 49,833 to 50,075
_02272
BACOVA_02274: BACOVA_02274 - hypothetical protein, at 50,072 to 50,458
_02274
BACOVA_02275: BACOVA_02275 - relaxase/mobilization nuclease domain protein, at 50,545 to 52,104
_02275
Position (kb)
49
50 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 48.443 kb on - strand, within BACOVA_02269 at 48.452 kb on - strand, within BACOVA_02269 at 48.588 kb on + strand, within BACOVA_02269 at 48.589 kb on - strand, within BACOVA_02269 at 48.741 kb on + strand, within BACOVA_02269 at 48.756 kb on + strand at 48.757 kb on - strand at 48.765 kb on + strand at 48.766 kb on - strand at 48.861 kb on + strand at 48.861 kb on + strand at 48.880 kb on + strand at 48.880 kb on + strand at 48.881 kb on - strand at 48.932 kb on + strand at 48.946 kb on + strand at 48.947 kb on - strand at 49.002 kb on - strand at 49.003 kb on + strand at 49.003 kb on + strand at 49.180 kb on + strand, within BACOVA_02270 at 49.180 kb on + strand, within BACOVA_02270 at 49.180 kb on + strand, within BACOVA_02270 at 49.181 kb on - strand, within BACOVA_02270 at 49.182 kb on + strand, within BACOVA_02270 at 49.182 kb on + strand, within BACOVA_02270 at 49.184 kb on + strand at 49.184 kb on + strand at 49.184 kb on + strand at 49.185 kb on - strand at 49.208 kb on + strand at 49.209 kb on - strand at 49.239 kb on + strand at 49.239 kb on + strand at 49.240 kb on - strand at 49.259 kb on - strand at 49.290 kb on + strand at 49.303 kb on - strand at 49.422 kb on + strand at 49.423 kb on - strand at 49.431 kb on + strand at 49.431 kb on + strand at 49.432 kb on - strand at 49.437 kb on + strand at 49.438 kb on - strand at 49.454 kb on + strand, within BACOVA_02271 at 49.476 kb on + strand, within BACOVA_02271 at 49.476 kb on + strand, within BACOVA_02271 at 49.530 kb on + strand, within BACOVA_02271 at 49.530 kb on + strand, within BACOVA_02271 at 49.535 kb on + strand, within BACOVA_02271 at 49.536 kb on - strand, within BACOVA_02271 at 49.536 kb on - strand, within BACOVA_02271 at 49.540 kb on + strand, within BACOVA_02271 at 49.541 kb on - strand, within BACOVA_02271 at 49.555 kb on + strand, within BACOVA_02271 at 49.669 kb on - strand at 49.701 kb on + strand at 49.726 kb on - strand at 49.726 kb on - strand at 49.770 kb on + strand, within BACOVA_02273 at 49.770 kb on + strand, within BACOVA_02273 at 49.774 kb on + strand, within BACOVA_02273 at 49.780 kb on - strand, within BACOVA_02273 at 49.780 kb on - strand, within BACOVA_02273 at 49.856 kb on + strand at 50.154 kb on - strand, within BACOVA_02274 at 50.171 kb on + strand, within BACOVA_02274 at 50.172 kb on - strand, within BACOVA_02274 at 50.173 kb on + strand, within BACOVA_02274 at 50.174 kb on - strand, within BACOVA_02274 at 50.174 kb on - strand, within BACOVA_02274 at 50.175 kb on + strand, within BACOVA_02274 at 50.175 kb on + strand, within BACOVA_02274 at 50.176 kb on - strand, within BACOVA_02274 at 50.176 kb on - strand, within BACOVA_02274 at 50.195 kb on + strand, within BACOVA_02274 at 50.233 kb on + strand, within BACOVA_02274 at 50.483 kb on + strand at 50.507 kb on - strand at 50.507 kb on - strand at 50.557 kb on + strand at 50.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 48,443 - BACOVA_02269 0.70 -0.8 48,452 - BACOVA_02269 0.70 -1.2 48,588 + BACOVA_02269 0.80 +1.0 48,589 - BACOVA_02269 0.80 +1.2 48,741 + BACOVA_02269 0.90 +0.5 48,756 + +0.4 48,757 - +0.8 48,765 + -0.9 48,766 - -0.7 48,861 + -0.6 48,861 + -0.1 48,880 + -0.4 48,880 + +0.8 48,881 - +0.4 48,932 + -2.2 48,946 + -1.8 48,947 - +0.3 49,002 - +0.8 49,003 + -0.7 49,003 + -1.5 49,180 + BACOVA_02270 0.88 -0.5 49,180 + BACOVA_02270 0.88 -0.3 49,180 + BACOVA_02270 0.88 -2.0 49,181 - BACOVA_02270 0.89 -1.1 49,182 + BACOVA_02270 0.89 -1.4 49,182 + BACOVA_02270 0.89 -0.2 49,184 + +0.2 49,184 + +0.6 49,184 + -0.9 49,185 - -0.1 49,208 + -1.8 49,209 - -0.3 49,239 + +1.8 49,239 + +0.8 49,240 - -0.0 49,259 - +0.4 49,290 + +0.5 49,303 - -1.2 49,422 + +0.8 49,423 - +0.1 49,431 + +0.8 49,431 + -0.6 49,432 - -0.2 49,437 + -0.5 49,438 - -1.2 49,454 + BACOVA_02271 0.15 -1.8 49,476 + BACOVA_02271 0.30 +0.5 49,476 + BACOVA_02271 0.30 -0.8 49,530 + BACOVA_02271 0.67 +0.9 49,530 + BACOVA_02271 0.67 -0.8 49,535 + BACOVA_02271 0.71 -1.2 49,536 - BACOVA_02271 0.72 +0.3 49,536 - BACOVA_02271 0.72 -1.2 49,540 + BACOVA_02271 0.74 +0.5 49,541 - BACOVA_02271 0.75 +0.2 49,555 + BACOVA_02271 0.85 +0.9 49,669 - +0.5 49,701 + -1.2 49,726 - -0.2 49,726 - -1.0 49,770 + BACOVA_02273 0.10 +1.0 49,770 + BACOVA_02273 0.10 +0.3 49,774 + BACOVA_02273 0.12 +4.0 49,780 - BACOVA_02273 0.14 -0.8 49,780 - BACOVA_02273 0.14 +0.0 49,856 + +0.2 50,154 - BACOVA_02274 0.21 +1.1 50,171 + BACOVA_02274 0.26 -0.7 50,172 - BACOVA_02274 0.26 +1.7 50,173 + BACOVA_02274 0.26 -1.9 50,174 - BACOVA_02274 0.26 -0.4 50,174 - BACOVA_02274 0.26 +0.8 50,175 + BACOVA_02274 0.27 -0.8 50,175 + BACOVA_02274 0.27 +0.8 50,176 - BACOVA_02274 0.27 +0.9 50,176 - BACOVA_02274 0.27 +4.5 50,195 + BACOVA_02274 0.32 -0.5 50,233 + BACOVA_02274 0.42 +0.3 50,483 + +1.8 50,507 - -0.0 50,507 - +0.6 50,557 + +0.3 50,558 + -0.2
Or see this region's nucleotide sequence