Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02271

Experiment: Peptone 2.5 mg/mL (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02269 and BACOVA_02270 are separated by 88 nucleotidesBACOVA_02270 and BACOVA_02271 are separated by 227 nucleotidesBACOVA_02271 and BACOVA_02273 are separated by 166 nucleotidesBACOVA_02273 and BACOVA_02272 overlap by 168 nucleotidesBACOVA_02272 and BACOVA_02274 overlap by 4 nucleotidesBACOVA_02274 and BACOVA_02275 are separated by 86 nucleotides BACOVA_02269: BACOVA_02269 - hypothetical protein, at 47,399 to 48,892 _02269 BACOVA_02270: BACOVA_02270 - hypothetical protein, at 48,981 to 49,205 _02270 BACOVA_02271: BACOVA_02271 - hypothetical protein, at 49,433 to 49,576 _02271 BACOVA_02273: BACOVA_02273 - hypothetical protein, at 49,743 to 50,000 _02273 BACOVA_02272: BACOVA_02272 - hypothetical protein, at 49,833 to 50,075 _02272 BACOVA_02274: BACOVA_02274 - hypothetical protein, at 50,072 to 50,458 _02274 BACOVA_02275: BACOVA_02275 - relaxase/mobilization nuclease domain protein, at 50,545 to 52,104 _02275 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 48.443 kb on - strand, within BACOVA_02269at 48.452 kb on - strand, within BACOVA_02269at 48.588 kb on + strand, within BACOVA_02269at 48.589 kb on - strand, within BACOVA_02269at 48.741 kb on + strand, within BACOVA_02269at 48.756 kb on + strandat 48.757 kb on - strandat 48.765 kb on + strandat 48.766 kb on - strandat 48.861 kb on + strandat 48.861 kb on + strandat 48.880 kb on + strandat 48.880 kb on + strandat 48.881 kb on - strandat 48.932 kb on + strandat 48.946 kb on + strandat 48.947 kb on - strandat 49.002 kb on - strandat 49.003 kb on + strandat 49.003 kb on + strandat 49.180 kb on + strand, within BACOVA_02270at 49.180 kb on + strand, within BACOVA_02270at 49.180 kb on + strand, within BACOVA_02270at 49.181 kb on - strand, within BACOVA_02270at 49.182 kb on + strand, within BACOVA_02270at 49.182 kb on + strand, within BACOVA_02270at 49.184 kb on + strandat 49.184 kb on + strandat 49.184 kb on + strandat 49.185 kb on - strandat 49.208 kb on + strandat 49.209 kb on - strandat 49.239 kb on + strandat 49.239 kb on + strandat 49.240 kb on - strandat 49.259 kb on - strandat 49.290 kb on + strandat 49.303 kb on - strandat 49.422 kb on + strandat 49.423 kb on - strandat 49.431 kb on + strandat 49.431 kb on + strandat 49.432 kb on - strandat 49.437 kb on + strandat 49.438 kb on - strandat 49.454 kb on + strand, within BACOVA_02271at 49.476 kb on + strand, within BACOVA_02271at 49.476 kb on + strand, within BACOVA_02271at 49.530 kb on + strand, within BACOVA_02271at 49.530 kb on + strand, within BACOVA_02271at 49.535 kb on + strand, within BACOVA_02271at 49.536 kb on - strand, within BACOVA_02271at 49.536 kb on - strand, within BACOVA_02271at 49.540 kb on + strand, within BACOVA_02271at 49.541 kb on - strand, within BACOVA_02271at 49.555 kb on + strand, within BACOVA_02271at 49.669 kb on - strandat 49.701 kb on + strandat 49.726 kb on - strandat 49.726 kb on - strandat 49.770 kb on + strand, within BACOVA_02273at 49.770 kb on + strand, within BACOVA_02273at 49.774 kb on + strand, within BACOVA_02273at 49.780 kb on - strand, within BACOVA_02273at 49.780 kb on - strand, within BACOVA_02273at 49.856 kb on + strandat 50.154 kb on - strand, within BACOVA_02274at 50.171 kb on + strand, within BACOVA_02274at 50.172 kb on - strand, within BACOVA_02274at 50.173 kb on + strand, within BACOVA_02274at 50.174 kb on - strand, within BACOVA_02274at 50.174 kb on - strand, within BACOVA_02274at 50.175 kb on + strand, within BACOVA_02274at 50.175 kb on + strand, within BACOVA_02274at 50.176 kb on - strand, within BACOVA_02274at 50.176 kb on - strand, within BACOVA_02274at 50.195 kb on + strand, within BACOVA_02274at 50.233 kb on + strand, within BACOVA_02274at 50.483 kb on + strandat 50.507 kb on - strandat 50.507 kb on - strandat 50.557 kb on + strandat 50.558 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
remove
48,443 - BACOVA_02269 0.70 -0.8
48,452 - BACOVA_02269 0.70 -1.2
48,588 + BACOVA_02269 0.80 +1.0
48,589 - BACOVA_02269 0.80 +1.2
48,741 + BACOVA_02269 0.90 +0.5
48,756 + +0.4
48,757 - +0.8
48,765 + -0.9
48,766 - -0.7
48,861 + -0.6
48,861 + -0.1
48,880 + -0.4
48,880 + +0.8
48,881 - +0.4
48,932 + -2.2
48,946 + -1.8
48,947 - +0.3
49,002 - +0.8
49,003 + -0.7
49,003 + -1.5
49,180 + BACOVA_02270 0.88 -0.5
49,180 + BACOVA_02270 0.88 -0.3
49,180 + BACOVA_02270 0.88 -2.0
49,181 - BACOVA_02270 0.89 -1.1
49,182 + BACOVA_02270 0.89 -1.4
49,182 + BACOVA_02270 0.89 -0.2
49,184 + +0.2
49,184 + +0.6
49,184 + -0.9
49,185 - -0.1
49,208 + -1.8
49,209 - -0.3
49,239 + +1.8
49,239 + +0.8
49,240 - -0.0
49,259 - +0.4
49,290 + +0.5
49,303 - -1.2
49,422 + +0.8
49,423 - +0.1
49,431 + +0.8
49,431 + -0.6
49,432 - -0.2
49,437 + -0.5
49,438 - -1.2
49,454 + BACOVA_02271 0.15 -1.8
49,476 + BACOVA_02271 0.30 +0.5
49,476 + BACOVA_02271 0.30 -0.8
49,530 + BACOVA_02271 0.67 +0.9
49,530 + BACOVA_02271 0.67 -0.8
49,535 + BACOVA_02271 0.71 -1.2
49,536 - BACOVA_02271 0.72 +0.3
49,536 - BACOVA_02271 0.72 -1.2
49,540 + BACOVA_02271 0.74 +0.5
49,541 - BACOVA_02271 0.75 +0.2
49,555 + BACOVA_02271 0.85 +0.9
49,669 - +0.5
49,701 + -1.2
49,726 - -0.2
49,726 - -1.0
49,770 + BACOVA_02273 0.10 +1.0
49,770 + BACOVA_02273 0.10 +0.3
49,774 + BACOVA_02273 0.12 +4.0
49,780 - BACOVA_02273 0.14 -0.8
49,780 - BACOVA_02273 0.14 +0.0
49,856 + +0.2
50,154 - BACOVA_02274 0.21 +1.1
50,171 + BACOVA_02274 0.26 -0.7
50,172 - BACOVA_02274 0.26 +1.7
50,173 + BACOVA_02274 0.26 -1.9
50,174 - BACOVA_02274 0.26 -0.4
50,174 - BACOVA_02274 0.26 +0.8
50,175 + BACOVA_02274 0.27 -0.8
50,175 + BACOVA_02274 0.27 +0.8
50,176 - BACOVA_02274 0.27 +0.9
50,176 - BACOVA_02274 0.27 +4.5
50,195 + BACOVA_02274 0.32 -0.5
50,233 + BACOVA_02274 0.42 +0.3
50,483 + +1.8
50,507 - -0.0
50,507 - +0.6
50,557 + +0.3
50,558 + -0.2

Or see this region's nucleotide sequence