Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01635 and BACOVA_01636 are separated by 416 nucleotides BACOVA_01636 and BACOVA_01637 are separated by 213 nucleotides
BACOVA_01635: BACOVA_01635 - butyrate kinase, at 141,490 to 142,551
_01635
BACOVA_01636: BACOVA_01636 - putative alpha-1,2-mannosidase, at 142,968 to 145,250
_01636
BACOVA_01637: BACOVA_01637 - hypothetical protein, at 145,464 to 147,221
_01637
Position (kb)
142
143
144
145
146 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 142.017 kb on - strand, within BACOVA_01635 at 142.021 kb on - strand, within BACOVA_01635 at 142.021 kb on - strand, within BACOVA_01635 at 142.160 kb on + strand, within BACOVA_01635 at 142.203 kb on + strand, within BACOVA_01635 at 142.235 kb on + strand, within BACOVA_01635 at 142.235 kb on + strand, within BACOVA_01635 at 142.236 kb on - strand, within BACOVA_01635 at 142.240 kb on - strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.263 kb on - strand, within BACOVA_01635 at 142.269 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.285 kb on - strand, within BACOVA_01635 at 142.285 kb on - strand, within BACOVA_01635 at 142.318 kb on + strand, within BACOVA_01635 at 142.319 kb on - strand, within BACOVA_01635 at 142.370 kb on + strand, within BACOVA_01635 at 142.370 kb on + strand, within BACOVA_01635 at 142.395 kb on + strand, within BACOVA_01635 at 142.396 kb on - strand, within BACOVA_01635 at 142.411 kb on + strand, within BACOVA_01635 at 142.412 kb on - strand, within BACOVA_01635 at 142.460 kb on - strand at 142.501 kb on - strand at 142.508 kb on + strand at 142.508 kb on + strand at 142.543 kb on + strand at 142.544 kb on - strand at 142.550 kb on - strand at 142.601 kb on - strand at 142.614 kb on - strand at 142.634 kb on - strand at 142.657 kb on + strand at 142.660 kb on + strand at 142.660 kb on + strand at 142.661 kb on - strand at 142.662 kb on + strand at 142.703 kb on + strand at 142.704 kb on - strand at 142.707 kb on - strand at 142.712 kb on + strand at 142.715 kb on + strand at 142.716 kb on - strand at 142.721 kb on + strand at 142.728 kb on + strand at 142.729 kb on - strand at 142.758 kb on - strand at 142.758 kb on - strand at 142.763 kb on - strand at 142.763 kb on - strand at 142.766 kb on - strand at 142.869 kb on + strand at 142.870 kb on - strand at 142.872 kb on - strand at 142.935 kb on + strand at 142.949 kb on + strand at 142.994 kb on - strand at 143.041 kb on - strand at 143.090 kb on + strand at 143.091 kb on - strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.173 kb on - strand at 143.178 kb on + strand at 143.179 kb on - strand at 143.180 kb on + strand at 143.273 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.445 kb on + strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.447 kb on + strand, within BACOVA_01636 at 143.519 kb on + strand, within BACOVA_01636 at 143.519 kb on + strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.562 kb on + strand, within BACOVA_01636 at 143.562 kb on + strand, within BACOVA_01636 at 143.568 kb on - strand, within BACOVA_01636 at 143.608 kb on + strand, within BACOVA_01636 at 143.609 kb on - strand, within BACOVA_01636 at 143.669 kb on + strand, within BACOVA_01636 at 143.670 kb on - strand, within BACOVA_01636 at 143.672 kb on - strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.753 kb on + strand, within BACOVA_01636 at 143.821 kb on + strand, within BACOVA_01636 at 143.885 kb on - strand, within BACOVA_01636 at 143.917 kb on - strand, within BACOVA_01636 at 143.950 kb on - strand, within BACOVA_01636 at 143.984 kb on + strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 144.035 kb on - strand, within BACOVA_01636 at 144.089 kb on + strand, within BACOVA_01636 at 144.093 kb on + strand, within BACOVA_01636 at 144.187 kb on - strand, within BACOVA_01636 at 144.187 kb on - strand, within BACOVA_01636 at 144.200 kb on + strand, within BACOVA_01636 at 144.205 kb on + strand, within BACOVA_01636 at 144.225 kb on + strand, within BACOVA_01636 at 144.235 kb on + strand, within BACOVA_01636 at 144.239 kb on - strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.257 kb on - strand, within BACOVA_01636 at 144.269 kb on - strand, within BACOVA_01636 at 144.297 kb on + strand, within BACOVA_01636 at 144.297 kb on + strand, within BACOVA_01636 at 144.301 kb on - strand, within BACOVA_01636 at 144.302 kb on + strand, within BACOVA_01636 at 144.302 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.310 kb on + strand, within BACOVA_01636 at 144.315 kb on + strand, within BACOVA_01636 at 144.316 kb on - strand, within BACOVA_01636 at 144.366 kb on + strand, within BACOVA_01636 at 144.367 kb on - strand, within BACOVA_01636 at 144.367 kb on - strand, within BACOVA_01636 at 144.372 kb on + strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.386 kb on + strand, within BACOVA_01636 at 144.386 kb on + strand, within BACOVA_01636 at 144.387 kb on - strand, within BACOVA_01636 at 144.460 kb on - strand, within BACOVA_01636 at 144.461 kb on + strand, within BACOVA_01636 at 144.462 kb on - strand, within BACOVA_01636 at 144.469 kb on + strand, within BACOVA_01636 at 144.582 kb on + strand, within BACOVA_01636 at 144.583 kb on - strand, within BACOVA_01636 at 144.596 kb on - strand, within BACOVA_01636 at 144.596 kb on - strand, within BACOVA_01636 at 144.625 kb on + strand, within BACOVA_01636 at 144.625 kb on + strand, within BACOVA_01636 at 144.647 kb on + strand, within BACOVA_01636 at 144.653 kb on + strand, within BACOVA_01636 at 144.653 kb on + strand, within BACOVA_01636 at 144.677 kb on - strand, within BACOVA_01636 at 144.700 kb on - strand, within BACOVA_01636 at 144.756 kb on + strand, within BACOVA_01636 at 144.757 kb on - strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.793 kb on - strand, within BACOVA_01636 at 144.793 kb on - strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.832 kb on - strand, within BACOVA_01636 at 144.855 kb on - strand, within BACOVA_01636 at 144.861 kb on + strand, within BACOVA_01636 at 144.861 kb on + strand, within BACOVA_01636 at 144.882 kb on + strand, within BACOVA_01636 at 144.952 kb on + strand, within BACOVA_01636 at 144.952 kb on + strand, within BACOVA_01636 at 144.973 kb on - strand, within BACOVA_01636 at 144.973 kb on - strand, within BACOVA_01636 at 145.010 kb on - strand, within BACOVA_01636 at 145.067 kb on + strand at 145.067 kb on + strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.072 kb on - strand at 145.072 kb on - strand at 145.072 kb on - strand at 145.074 kb on - strand at 145.105 kb on - strand at 145.116 kb on + strand at 145.117 kb on - strand at 145.120 kb on + strand at 145.121 kb on - strand at 145.139 kb on - strand at 145.154 kb on + strand at 145.155 kb on - strand at 145.183 kb on + strand at 145.184 kb on - strand at 145.226 kb on + strand at 145.226 kb on + strand at 145.279 kb on + strand at 145.280 kb on - strand at 145.294 kb on + strand at 145.295 kb on - strand at 145.306 kb on + strand at 145.306 kb on + strand at 145.306 kb on + strand at 145.307 kb on - strand at 145.309 kb on + strand at 145.351 kb on + strand at 145.352 kb on - strand at 145.361 kb on - strand at 145.390 kb on - strand at 145.422 kb on - strand at 145.439 kb on + strand at 145.440 kb on - strand at 145.440 kb on - strand at 145.441 kb on + strand at 145.441 kb on + strand at 145.442 kb on - strand at 145.451 kb on + strand at 145.451 kb on + strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.475 kb on + strand at 145.781 kb on - strand, within BACOVA_01637 at 145.821 kb on - strand, within BACOVA_01637 at 146.244 kb on - strand, within BACOVA_01637
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 142,017 - BACOVA_01635 0.50 -1.8 142,021 - BACOVA_01635 0.50 -2.5 142,021 - BACOVA_01635 0.50 -1.6 142,160 + BACOVA_01635 0.63 -3.9 142,203 + BACOVA_01635 0.67 -0.4 142,235 + BACOVA_01635 0.70 -2.5 142,235 + BACOVA_01635 0.70 -3.0 142,236 - BACOVA_01635 0.70 -2.3 142,240 - BACOVA_01635 0.71 -2.7 142,262 + BACOVA_01635 0.73 -1.7 142,262 + BACOVA_01635 0.73 -2.0 142,262 + BACOVA_01635 0.73 -1.9 142,263 - BACOVA_01635 0.73 -2.3 142,269 + BACOVA_01635 0.73 -3.2 142,284 + BACOVA_01635 0.75 -1.7 142,284 + BACOVA_01635 0.75 -0.0 142,284 + BACOVA_01635 0.75 -2.2 142,285 - BACOVA_01635 0.75 -2.1 142,285 - BACOVA_01635 0.75 -2.6 142,318 + BACOVA_01635 0.78 -1.9 142,319 - BACOVA_01635 0.78 -2.1 142,370 + BACOVA_01635 0.83 -1.4 142,370 + BACOVA_01635 0.83 -0.0 142,395 + BACOVA_01635 0.85 -0.4 142,396 - BACOVA_01635 0.85 -2.4 142,411 + BACOVA_01635 0.87 -1.1 142,412 - BACOVA_01635 0.87 -2.8 142,460 - -2.4 142,501 - -3.4 142,508 + -3.4 142,508 + -0.6 142,543 + -2.7 142,544 - -0.8 142,550 - -0.2 142,601 - +0.1 142,614 - +0.2 142,634 - +0.6 142,657 + -2.3 142,660 + -0.0 142,660 + -3.3 142,661 - -0.1 142,662 + +1.0 142,703 + -1.9 142,704 - -0.4 142,707 - -2.5 142,712 + +1.3 142,715 + -1.0 142,716 - +0.8 142,721 + -2.2 142,728 + -0.8 142,729 - -0.4 142,758 - -0.7 142,758 - +0.3 142,763 - -1.0 142,763 - -0.0 142,766 - -0.0 142,869 + -1.0 142,870 - -0.2 142,872 - -0.4 142,935 + +1.5 142,949 + +0.4 142,994 - -0.3 143,041 - -0.0 143,090 + -0.8 143,091 - +0.5 143,172 + +1.1 143,172 + +0.1 143,172 + +1.0 143,172 + -1.8 143,173 - +1.2 143,178 + -1.4 143,179 - -1.4 143,180 + -0.8 143,273 + BACOVA_01636 0.13 -1.7 143,343 + BACOVA_01636 0.16 +0.3 143,343 + BACOVA_01636 0.16 -0.8 143,343 + BACOVA_01636 0.16 -0.5 143,445 + BACOVA_01636 0.21 +0.2 143,446 - BACOVA_01636 0.21 -1.9 143,446 - BACOVA_01636 0.21 -0.4 143,446 - BACOVA_01636 0.21 -0.6 143,447 + BACOVA_01636 0.21 -0.4 143,519 + BACOVA_01636 0.24 -0.4 143,519 + BACOVA_01636 0.24 -1.6 143,520 - BACOVA_01636 0.24 +0.5 143,520 - BACOVA_01636 0.24 +1.1 143,520 - BACOVA_01636 0.24 +1.6 143,562 + BACOVA_01636 0.26 -2.2 143,562 + BACOVA_01636 0.26 -1.0 143,568 - BACOVA_01636 0.26 +0.5 143,608 + BACOVA_01636 0.28 -1.4 143,609 - BACOVA_01636 0.28 -1.1 143,669 + BACOVA_01636 0.31 +1.4 143,670 - BACOVA_01636 0.31 +0.7 143,672 - BACOVA_01636 0.31 +0.4 143,701 + BACOVA_01636 0.32 +0.5 143,701 + BACOVA_01636 0.32 +0.2 143,701 + BACOVA_01636 0.32 -0.3 143,702 - BACOVA_01636 0.32 +0.7 143,702 - BACOVA_01636 0.32 +0.4 143,702 - BACOVA_01636 0.32 -1.2 143,753 + BACOVA_01636 0.34 -1.1 143,821 + BACOVA_01636 0.37 +0.8 143,885 - BACOVA_01636 0.40 +1.2 143,917 - BACOVA_01636 0.42 +0.3 143,950 - BACOVA_01636 0.43 -0.3 143,984 + BACOVA_01636 0.45 -1.7 143,985 - BACOVA_01636 0.45 +0.1 143,985 - BACOVA_01636 0.45 +1.2 143,985 - BACOVA_01636 0.45 -1.2 143,985 - BACOVA_01636 0.45 +1.0 143,985 - BACOVA_01636 0.45 +1.0 144,035 - BACOVA_01636 0.47 +0.2 144,089 + BACOVA_01636 0.49 +0.4 144,093 + BACOVA_01636 0.49 +1.1 144,187 - BACOVA_01636 0.53 +0.5 144,187 - BACOVA_01636 0.53 +0.3 144,200 + BACOVA_01636 0.54 -0.7 144,205 + BACOVA_01636 0.54 +0.7 144,225 + BACOVA_01636 0.55 -0.0 144,235 + BACOVA_01636 0.55 -1.5 144,239 - BACOVA_01636 0.56 -0.3 144,256 + BACOVA_01636 0.56 -0.4 144,256 + BACOVA_01636 0.56 -1.5 144,256 + BACOVA_01636 0.56 +0.5 144,257 - BACOVA_01636 0.56 +1.0 144,269 - BACOVA_01636 0.57 +0.7 144,297 + BACOVA_01636 0.58 -0.6 144,297 + BACOVA_01636 0.58 -0.4 144,301 - BACOVA_01636 0.58 +0.1 144,302 + BACOVA_01636 0.58 +1.0 144,302 + BACOVA_01636 0.58 -0.6 144,305 + BACOVA_01636 0.59 -0.1 144,305 + BACOVA_01636 0.59 -0.7 144,305 + BACOVA_01636 0.59 -0.3 144,310 + BACOVA_01636 0.59 -0.7 144,315 + BACOVA_01636 0.59 +0.3 144,316 - BACOVA_01636 0.59 +1.0 144,366 + BACOVA_01636 0.61 -0.6 144,367 - BACOVA_01636 0.61 +1.6 144,367 - BACOVA_01636 0.61 -0.9 144,372 + BACOVA_01636 0.61 +0.1 144,373 - BACOVA_01636 0.62 +1.5 144,373 - BACOVA_01636 0.62 +0.2 144,373 - BACOVA_01636 0.62 -0.1 144,386 + BACOVA_01636 0.62 +0.5 144,386 + BACOVA_01636 0.62 +0.2 144,387 - BACOVA_01636 0.62 +0.9 144,460 - BACOVA_01636 0.65 -0.9 144,461 + BACOVA_01636 0.65 -0.5 144,462 - BACOVA_01636 0.65 -0.1 144,469 + BACOVA_01636 0.66 +1.0 144,582 + BACOVA_01636 0.71 -0.9 144,583 - BACOVA_01636 0.71 -1.4 144,596 - BACOVA_01636 0.71 -0.5 144,596 - BACOVA_01636 0.71 -0.0 144,625 + BACOVA_01636 0.73 -0.1 144,625 + BACOVA_01636 0.73 -0.0 144,647 + BACOVA_01636 0.74 -0.1 144,653 + BACOVA_01636 0.74 -0.3 144,653 + BACOVA_01636 0.74 -1.1 144,677 - BACOVA_01636 0.75 +0.5 144,700 - BACOVA_01636 0.76 +0.6 144,756 + BACOVA_01636 0.78 +0.2 144,757 - BACOVA_01636 0.78 +1.1 144,792 + BACOVA_01636 0.80 +0.6 144,792 + BACOVA_01636 0.80 +1.3 144,792 + BACOVA_01636 0.80 -0.4 144,793 - BACOVA_01636 0.80 -1.2 144,793 - BACOVA_01636 0.80 +1.0 144,798 + BACOVA_01636 0.80 +1.0 144,798 + BACOVA_01636 0.80 +0.7 144,798 + BACOVA_01636 0.80 +1.1 144,798 + BACOVA_01636 0.80 +0.5 144,798 + BACOVA_01636 0.80 -1.2 144,799 - BACOVA_01636 0.80 -1.2 144,799 - BACOVA_01636 0.80 +0.3 144,799 - BACOVA_01636 0.80 +1.2 144,799 - BACOVA_01636 0.80 +0.6 144,832 - BACOVA_01636 0.82 -1.8 144,855 - BACOVA_01636 0.83 -0.3 144,861 + BACOVA_01636 0.83 +0.4 144,861 + BACOVA_01636 0.83 +0.5 144,882 + BACOVA_01636 0.84 +0.9 144,952 + BACOVA_01636 0.87 +3.2 144,952 + BACOVA_01636 0.87 -0.0 144,973 - BACOVA_01636 0.88 -0.2 144,973 - BACOVA_01636 0.88 +0.4 145,010 - BACOVA_01636 0.89 +0.6 145,067 + -0.6 145,067 + +0.0 145,068 - +0.4 145,068 - -0.4 145,068 - -1.6 145,068 - -0.8 145,072 - -0.0 145,072 - -0.7 145,072 - +1.4 145,074 - +0.3 145,105 - +0.3 145,116 + -0.6 145,117 - +0.4 145,120 + +1.2 145,121 - -1.7 145,139 - +0.4 145,154 + -0.5 145,155 - +1.0 145,183 + -0.2 145,184 - -1.3 145,226 + -0.6 145,226 + +1.0 145,279 + +1.5 145,280 - -1.4 145,294 + +0.7 145,295 - -0.2 145,306 + -0.2 145,306 + -0.6 145,306 + -2.6 145,307 - -0.5 145,309 + +1.5 145,351 + -0.3 145,352 - -0.6 145,361 - +1.2 145,390 - -1.2 145,422 - +0.0 145,439 + +0.5 145,440 - +1.3 145,440 - -0.5 145,441 + +1.0 145,441 + -0.5 145,442 - -0.1 145,451 + -1.0 145,451 + +0.3 145,452 - -1.4 145,452 - -0.0 145,452 - -0.1 145,452 - -0.6 145,452 - -1.0 145,456 + -0.3 145,456 + +0.7 145,456 + -0.7 145,456 + -0.6 145,475 + -2.2 145,781 - BACOVA_01637 0.18 +1.2 145,821 - BACOVA_01637 0.20 -1.2 146,244 - BACOVA_01637 0.44 +1.7
Or see this region's nucleotide sequence