Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01553 and BACOVA_01554 are separated by 452 nucleotides BACOVA_01554 and BACOVA_01555 are separated by 316 nucleotides
BACOVA_01553: BACOVA_01553 - site-specific recombinase, phage integrase family, at 52,732 to 54,063
_01553
BACOVA_01554: BACOVA_01554 - hypothetical protein, at 54,516 to 55,001
_01554
BACOVA_01555: BACOVA_01555 - DNA (cytosine-5-)-methyltransferase, at 55,318 to 56,571
_01555
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 53.601 kb on + strand, within BACOVA_01553 at 53.602 kb on - strand, within BACOVA_01553 at 53.603 kb on + strand, within BACOVA_01553 at 53.611 kb on + strand, within BACOVA_01553 at 53.615 kb on + strand, within BACOVA_01553 at 53.616 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.845 kb on - strand, within BACOVA_01553 at 53.846 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.894 kb on + strand, within BACOVA_01553 at 53.895 kb on - strand, within BACOVA_01553 at 53.931 kb on + strand at 53.931 kb on + strand at 53.932 kb on - strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.953 kb on - strand at 53.953 kb on - strand at 53.997 kb on + strand at 54.001 kb on + strand at 54.076 kb on + strand at 54.087 kb on + strand at 54.087 kb on + strand at 54.088 kb on - strand at 54.143 kb on + strand at 54.153 kb on + strand at 54.167 kb on - strand at 54.167 kb on - strand at 54.213 kb on + strand at 54.285 kb on - strand at 54.522 kb on - strand at 54.547 kb on - strand at 54.547 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.565 kb on - strand, within BACOVA_01554 at 54.565 kb on - strand, within BACOVA_01554 at 54.660 kb on + strand, within BACOVA_01554 at 54.725 kb on + strand, within BACOVA_01554 at 54.780 kb on + strand, within BACOVA_01554 at 54.781 kb on - strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.891 kb on - strand, within BACOVA_01554 at 54.893 kb on - strand, within BACOVA_01554 at 54.917 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 55.004 kb on - strand at 55.010 kb on + strand at 55.011 kb on - strand at 55.011 kb on - strand at 55.016 kb on - strand at 55.019 kb on + strand at 55.022 kb on + strand at 55.023 kb on - strand at 55.048 kb on - strand at 55.112 kb on - strand at 55.114 kb on + strand at 55.119 kb on + strand at 55.127 kb on + strand at 55.134 kb on + strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.144 kb on + strand at 55.144 kb on + strand at 55.145 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.149 kb on + strand at 55.150 kb on - strand at 55.159 kb on + strand at 55.169 kb on + strand at 55.170 kb on - strand at 55.170 kb on - strand at 55.173 kb on - strand at 55.189 kb on + strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.210 kb on + strand at 55.279 kb on - strand at 55.283 kb on - strand at 55.284 kb on + strand at 55.285 kb on - strand at 55.287 kb on - strand at 55.330 kb on - strand at 55.380 kb on - strand at 55.390 kb on - strand at 55.390 kb on - strand at 55.456 kb on - strand, within BACOVA_01555 at 55.636 kb on - strand, within BACOVA_01555 at 55.651 kb on - strand, within BACOVA_01555 at 55.788 kb on - strand, within BACOVA_01555 at 55.893 kb on - strand, within BACOVA_01555 at 55.915 kb on - strand, within BACOVA_01555
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 53,601 + BACOVA_01553 0.65 -0.8 53,602 - BACOVA_01553 0.65 -0.9 53,603 + BACOVA_01553 0.65 +0.6 53,611 + BACOVA_01553 0.66 -0.9 53,615 + BACOVA_01553 0.66 +0.6 53,616 - BACOVA_01553 0.66 +1.2 53,671 - BACOVA_01553 0.70 -0.4 53,671 - BACOVA_01553 0.70 -1.6 53,794 - BACOVA_01553 0.80 +0.5 53,794 - BACOVA_01553 0.80 +1.0 53,845 - BACOVA_01553 0.84 +1.3 53,846 + BACOVA_01553 0.84 -0.8 53,887 + BACOVA_01553 0.87 +0.4 53,887 + BACOVA_01553 0.87 +0.2 53,894 + BACOVA_01553 0.87 -0.9 53,895 - BACOVA_01553 0.87 +1.2 53,931 + +1.0 53,931 + -0.7 53,932 - -0.9 53,952 + +0.7 53,952 + +1.0 53,952 + -1.5 53,953 - +0.4 53,953 - -0.0 53,997 + +0.5 54,001 + -0.1 54,076 + -1.7 54,087 + +0.4 54,087 + -0.3 54,088 - -0.3 54,143 + -1.0 54,153 + +0.4 54,167 - -0.0 54,167 - +0.4 54,213 + -0.5 54,285 - +1.0 54,522 - +0.5 54,547 - -0.6 54,547 - -0.9 54,559 - -0.8 54,559 - -0.0 54,559 - +0.7 54,560 + -0.4 54,560 + -0.2 54,560 + -0.6 54,560 + +0.5 54,560 + +0.7 54,560 + -1.3 54,561 - +1.0 54,561 - -0.6 54,561 - +0.1 54,564 + -0.8 54,564 + +0.4 54,564 + +0.6 54,565 - BACOVA_01554 0.10 -1.0 54,565 - BACOVA_01554 0.10 -0.4 54,660 + BACOVA_01554 0.30 -1.0 54,725 + BACOVA_01554 0.43 -0.6 54,780 + BACOVA_01554 0.54 -0.2 54,781 - BACOVA_01554 0.55 +0.1 54,888 + BACOVA_01554 0.77 -3.1 54,888 + BACOVA_01554 0.77 +0.6 54,888 + BACOVA_01554 0.77 +0.1 54,889 - BACOVA_01554 0.77 -1.3 54,889 - BACOVA_01554 0.77 -0.0 54,889 - BACOVA_01554 0.77 +0.1 54,889 - BACOVA_01554 0.77 -1.0 54,889 - BACOVA_01554 0.77 +0.1 54,891 - BACOVA_01554 0.77 -0.7 54,893 - BACOVA_01554 0.78 -0.7 54,917 - BACOVA_01554 0.83 +0.8 54,922 - BACOVA_01554 0.84 +0.2 54,922 - BACOVA_01554 0.84 -0.5 55,004 - +0.6 55,010 + -0.2 55,011 - -0.0 55,011 - +0.4 55,016 - -1.0 55,019 + -0.2 55,022 + -0.7 55,023 - +1.0 55,048 - +0.4 55,112 - -0.5 55,114 + -0.3 55,119 + +0.1 55,127 + -0.9 55,134 + +0.4 55,135 - +0.6 55,135 - +0.5 55,135 - -0.4 55,144 + -0.6 55,144 + -1.0 55,145 - +0.2 55,147 - +1.0 55,147 - -1.3 55,147 - -1.9 55,149 + -2.1 55,150 - -0.7 55,159 + +0.5 55,169 + -0.6 55,170 - +1.0 55,170 - -1.0 55,173 - -0.0 55,189 + -0.0 55,208 - -1.6 55,208 - -0.3 55,208 - -0.6 55,208 - -0.3 55,210 + -1.6 55,279 - +1.0 55,283 - -0.6 55,284 + -1.0 55,285 - -0.3 55,287 - -0.1 55,330 - +0.8 55,380 - -1.5 55,390 - -1.2 55,390 - -2.2 55,456 - BACOVA_01555 0.11 +1.4 55,636 - BACOVA_01555 0.25 +0.4 55,651 - BACOVA_01555 0.27 -0.4 55,788 - BACOVA_01555 0.37 -0.4 55,893 - BACOVA_01555 0.46 -0.2 55,915 - BACOVA_01555 0.48 -2.7
Or see this region's nucleotide sequence