Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00539 and BACOVA_00540 are separated by 13 nucleotides BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides
BACOVA_00539: BACOVA_00539 - RHS repeat-associated core domain protein, at 34,609 to 37,680
_00539
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
Position (kb) 37
38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.781 kb on + strand, within BACOVA_00539 at 36.781 kb on + strand, within BACOVA_00539 at 36.781 kb on + strand, within BACOVA_00539 at 36.782 kb on - strand, within BACOVA_00539 at 36.809 kb on + strand, within BACOVA_00539 at 36.833 kb on - strand, within BACOVA_00539 at 36.866 kb on + strand, within BACOVA_00539 at 36.873 kb on - strand, within BACOVA_00539 at 36.919 kb on - strand, within BACOVA_00539 at 36.938 kb on + strand, within BACOVA_00539 at 36.943 kb on + strand, within BACOVA_00539 at 36.943 kb on + strand, within BACOVA_00539 at 36.972 kb on - strand, within BACOVA_00539 at 36.996 kb on + strand, within BACOVA_00539 at 37.001 kb on - strand, within BACOVA_00539 at 37.043 kb on + strand, within BACOVA_00539 at 37.044 kb on - strand, within BACOVA_00539 at 37.173 kb on + strand, within BACOVA_00539 at 37.184 kb on + strand, within BACOVA_00539 at 37.229 kb on + strand, within BACOVA_00539 at 37.266 kb on - strand, within BACOVA_00539 at 37.269 kb on + strand, within BACOVA_00539 at 37.347 kb on - strand, within BACOVA_00539 at 37.347 kb on - strand, within BACOVA_00539 at 37.356 kb on + strand, within BACOVA_00539 at 37.357 kb on - strand, within BACOVA_00539 at 37.403 kb on + strand at 37.403 kb on + strand at 37.409 kb on - strand at 37.409 kb on - strand at 37.409 kb on - strand at 37.428 kb on + strand at 37.431 kb on + strand at 37.493 kb on + strand at 37.502 kb on - strand at 37.546 kb on + strand at 37.547 kb on - strand at 37.551 kb on - strand at 37.556 kb on + strand at 37.556 kb on + strand at 37.557 kb on - strand at 37.560 kb on + strand at 37.561 kb on - strand at 37.561 kb on - strand at 37.654 kb on + strand at 37.655 kb on - strand at 37.656 kb on + strand at 37.661 kb on - strand at 37.667 kb on - strand at 37.733 kb on + strand at 37.746 kb on + strand at 37.776 kb on - strand at 37.794 kb on + strand at 37.795 kb on - strand at 37.848 kb on + strand at 37.849 kb on - strand at 37.852 kb on + strand at 37.852 kb on + strand at 37.852 kb on + strand at 37.853 kb on - strand at 37.854 kb on + strand at 37.854 kb on + strand at 37.855 kb on - strand at 37.889 kb on + strand at 37.889 kb on + strand at 37.954 kb on + strand at 37.955 kb on - strand at 37.978 kb on + strand at 38.017 kb on - strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.059 kb on - strand, within BACOVA_00540 at 38.083 kb on - strand, within BACOVA_00540 at 38.097 kb on + strand, within BACOVA_00540 at 38.123 kb on + strand, within BACOVA_00540 at 38.142 kb on + strand, within BACOVA_00540 at 38.174 kb on + strand, within BACOVA_00540 at 38.184 kb on + strand, within BACOVA_00540 at 38.185 kb on - strand, within BACOVA_00540 at 38.185 kb on - strand, within BACOVA_00540 at 38.190 kb on + strand, within BACOVA_00540 at 38.190 kb on - strand, within BACOVA_00540 at 38.191 kb on - strand, within BACOVA_00540 at 38.239 kb on - strand, within BACOVA_00540 at 38.267 kb on + strand, within BACOVA_00540 at 38.292 kb on + strand, within BACOVA_00540 at 38.293 kb on - strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.296 kb on + strand, within BACOVA_00540 at 38.296 kb on + strand, within BACOVA_00540 at 38.297 kb on - strand, within BACOVA_00540 at 38.339 kb on + strand, within BACOVA_00540 at 38.392 kb on - strand, within BACOVA_00540 at 38.410 kb on + strand, within BACOVA_00540 at 38.411 kb on - strand, within BACOVA_00540 at 38.467 kb on - strand, within BACOVA_00540 at 38.487 kb on + strand, within BACOVA_00540 at 38.488 kb on - strand, within BACOVA_00540 at 38.488 kb on - strand, within BACOVA_00540 at 38.505 kb on + strand, within BACOVA_00540 at 38.512 kb on + strand, within BACOVA_00540 at 38.513 kb on - strand, within BACOVA_00540 at 38.531 kb on - strand, within BACOVA_00540 at 38.533 kb on - strand, within BACOVA_00540 at 38.583 kb on + strand, within BACOVA_00540 at 38.593 kb on - strand, within BACOVA_00540 at 38.593 kb on - strand, within BACOVA_00540 at 38.611 kb on + strand, within BACOVA_00540 at 38.625 kb on + strand, within BACOVA_00540 at 38.749 kb on + strand, within BACOVA_00540 at 38.830 kb on + strand, within BACOVA_00540 at 38.867 kb on + strand, within BACOVA_00540 at 38.867 kb on + strand, within BACOVA_00540 at 38.868 kb on - strand, within BACOVA_00540 at 38.871 kb on - strand, within BACOVA_00540 at 38.980 kb on + strand, within BACOVA_00540 at 39.007 kb on - strand, within BACOVA_00540 at 39.017 kb on + strand, within BACOVA_00540 at 39.043 kb on + strand, within BACOVA_00540 at 39.044 kb on - strand, within BACOVA_00540 at 39.053 kb on + strand, within BACOVA_00540 at 39.072 kb on - strand, within BACOVA_00540 at 39.084 kb on - strand, within BACOVA_00540 at 39.139 kb on + strand, within BACOVA_00540 at 39.144 kb on + strand, within BACOVA_00540 at 39.172 kb on + strand, within BACOVA_00540 at 39.172 kb on + strand, within BACOVA_00540 at 39.173 kb on - strand, within BACOVA_00540 at 39.173 kb on - strand, within BACOVA_00540 at 39.231 kb on + strand, within BACOVA_00540 at 39.261 kb on + strand, within BACOVA_00540 at 39.262 kb on - strand, within BACOVA_00540 at 39.262 kb on - strand, within BACOVA_00540 at 39.289 kb on - strand, within BACOVA_00540 at 39.321 kb on + strand, within BACOVA_00540 at 39.349 kb on - strand, within BACOVA_00540 at 39.408 kb on - strand, within BACOVA_00540 at 39.499 kb on + strand, within BACOVA_00540 at 39.502 kb on - strand, within BACOVA_00540 at 39.536 kb on - strand, within BACOVA_00540 at 39.536 kb on - strand, within BACOVA_00540 at 39.577 kb on - strand, within BACOVA_00540 at 39.602 kb on - strand, within BACOVA_00540 at 39.631 kb on - strand, within BACOVA_00540 at 39.665 kb on + strand, within BACOVA_00540 at 39.688 kb on + strand, within BACOVA_00540 at 39.689 kb on - strand, within BACOVA_00540 at 39.710 kb on + strand, within BACOVA_00540 at 39.712 kb on + strand, within BACOVA_00540 at 39.793 kb on + strand, within BACOVA_00540 at 39.794 kb on - strand, within BACOVA_00540 at 39.813 kb on + strand, within BACOVA_00540 at 39.855 kb on + strand, within BACOVA_00540 at 39.856 kb on - strand, within BACOVA_00540 at 39.913 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.988 kb on + strand, within BACOVA_00540 at 40.242 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.276 kb on + strand, within BACOVA_00540 at 40.300 kb on - strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.341 kb on + strand, within BACOVA_00540 at 40.373 kb on + strand, within BACOVA_00540 at 40.452 kb on + strand at 40.452 kb on + strand at 40.497 kb on + strand at 40.497 kb on + strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.500 kb on - strand at 40.501 kb on + strand at 40.502 kb on - strand at 40.554 kb on + strand at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 36,781 + BACOVA_00539 0.71 -0.9 36,781 + BACOVA_00539 0.71 +0.4 36,781 + BACOVA_00539 0.71 -0.7 36,782 - BACOVA_00539 0.71 -2.5 36,809 + BACOVA_00539 0.72 +1.6 36,833 - BACOVA_00539 0.72 -2.0 36,866 + BACOVA_00539 0.73 -0.0 36,873 - BACOVA_00539 0.74 +0.4 36,919 - BACOVA_00539 0.75 +0.8 36,938 + BACOVA_00539 0.76 -2.1 36,943 + BACOVA_00539 0.76 -0.5 36,943 + BACOVA_00539 0.76 +2.4 36,972 - BACOVA_00539 0.77 -1.4 36,996 + BACOVA_00539 0.78 -0.9 37,001 - BACOVA_00539 0.78 +0.1 37,043 + BACOVA_00539 0.79 +2.4 37,044 - BACOVA_00539 0.79 -0.6 37,173 + BACOVA_00539 0.83 +0.3 37,184 + BACOVA_00539 0.84 +0.9 37,229 + BACOVA_00539 0.85 -1.5 37,266 - BACOVA_00539 0.86 -1.5 37,269 + BACOVA_00539 0.87 -0.7 37,347 - BACOVA_00539 0.89 -2.0 37,347 - BACOVA_00539 0.89 +0.1 37,356 + BACOVA_00539 0.89 -1.2 37,357 - BACOVA_00539 0.89 -1.3 37,403 + -0.4 37,403 + -1.0 37,409 - -0.3 37,409 - +3.1 37,409 - +0.5 37,428 + +0.5 37,431 + -0.5 37,493 + +2.4 37,502 - -1.5 37,546 + -1.3 37,547 - -0.5 37,551 - +0.4 37,556 + -2.0 37,556 + +0.4 37,557 - +0.7 37,560 + -0.4 37,561 - +1.3 37,561 - -0.7 37,654 + -1.5 37,655 - -0.5 37,656 + +0.7 37,661 - +0.5 37,667 - +0.6 37,733 + +0.8 37,746 + +1.2 37,776 - -1.7 37,794 + -0.5 37,795 - -1.3 37,848 + -0.2 37,849 - -1.7 37,852 + -1.9 37,852 + +0.5 37,852 + +1.4 37,853 - +1.1 37,854 + +0.6 37,854 + -0.9 37,855 - -0.2 37,889 + +0.3 37,889 + +0.3 37,954 + -0.1 37,955 - +0.3 37,978 + +1.0 38,017 - BACOVA_00540 0.11 +0.7 38,058 + BACOVA_00540 0.12 -0.2 38,058 + BACOVA_00540 0.12 +0.3 38,058 + BACOVA_00540 0.12 +0.4 38,059 - BACOVA_00540 0.12 -0.2 38,083 - BACOVA_00540 0.13 -0.7 38,097 + BACOVA_00540 0.14 +0.8 38,123 + BACOVA_00540 0.14 -1.2 38,142 + BACOVA_00540 0.15 -0.4 38,174 + BACOVA_00540 0.16 -1.9 38,184 + BACOVA_00540 0.16 +0.5 38,185 - BACOVA_00540 0.16 -2.9 38,185 - BACOVA_00540 0.16 -1.3 38,190 + BACOVA_00540 0.17 +0.5 38,190 - BACOVA_00540 0.17 -2.7 38,191 - BACOVA_00540 0.17 +2.6 38,239 - BACOVA_00540 0.18 -1.0 38,267 + BACOVA_00540 0.19 +0.6 38,292 + BACOVA_00540 0.20 +0.8 38,293 - BACOVA_00540 0.20 -2.0 38,294 + BACOVA_00540 0.20 +0.5 38,294 + BACOVA_00540 0.20 +0.1 38,294 + BACOVA_00540 0.20 -2.2 38,296 + BACOVA_00540 0.20 +0.8 38,296 + BACOVA_00540 0.20 +0.8 38,297 - BACOVA_00540 0.20 -1.5 38,339 + BACOVA_00540 0.22 +0.3 38,392 - BACOVA_00540 0.23 +0.1 38,410 + BACOVA_00540 0.24 +0.1 38,411 - BACOVA_00540 0.24 -1.5 38,467 - BACOVA_00540 0.26 +0.4 38,487 + BACOVA_00540 0.27 -1.5 38,488 - BACOVA_00540 0.27 +1.3 38,488 - BACOVA_00540 0.27 -1.7 38,505 + BACOVA_00540 0.27 -0.5 38,512 + BACOVA_00540 0.27 +0.4 38,513 - BACOVA_00540 0.27 +0.4 38,531 - BACOVA_00540 0.28 -1.6 38,533 - BACOVA_00540 0.28 +1.8 38,583 + BACOVA_00540 0.30 +1.8 38,593 - BACOVA_00540 0.30 +0.1 38,593 - BACOVA_00540 0.30 -0.4 38,611 + BACOVA_00540 0.31 +0.8 38,625 + BACOVA_00540 0.31 -2.3 38,749 + BACOVA_00540 0.35 +0.6 38,830 + BACOVA_00540 0.38 -1.0 38,867 + BACOVA_00540 0.39 -0.3 38,867 + BACOVA_00540 0.39 +0.1 38,868 - BACOVA_00540 0.39 -0.2 38,871 - BACOVA_00540 0.39 +0.9 38,980 + BACOVA_00540 0.43 +0.0 39,007 - BACOVA_00540 0.44 +1.8 39,017 + BACOVA_00540 0.44 -0.7 39,043 + BACOVA_00540 0.45 -0.3 39,044 - BACOVA_00540 0.45 -0.7 39,053 + BACOVA_00540 0.46 -1.9 39,072 - BACOVA_00540 0.46 +0.1 39,084 - BACOVA_00540 0.47 +1.1 39,139 + BACOVA_00540 0.48 -1.3 39,144 + BACOVA_00540 0.49 +0.1 39,172 + BACOVA_00540 0.50 -0.3 39,172 + BACOVA_00540 0.50 -0.9 39,173 - BACOVA_00540 0.50 -1.5 39,173 - BACOVA_00540 0.50 +0.1 39,231 + BACOVA_00540 0.52 -0.5 39,261 + BACOVA_00540 0.53 +2.8 39,262 - BACOVA_00540 0.53 +0.4 39,262 - BACOVA_00540 0.53 -1.0 39,289 - BACOVA_00540 0.53 -0.4 39,321 + BACOVA_00540 0.55 +0.3 39,349 - BACOVA_00540 0.55 +1.2 39,408 - BACOVA_00540 0.57 +0.8 39,499 + BACOVA_00540 0.61 +0.3 39,502 - BACOVA_00540 0.61 -1.2 39,536 - BACOVA_00540 0.62 -1.2 39,536 - BACOVA_00540 0.62 +0.6 39,577 - BACOVA_00540 0.63 +0.1 39,602 - BACOVA_00540 0.64 -0.2 39,631 - BACOVA_00540 0.65 -0.2 39,665 + BACOVA_00540 0.66 +0.3 39,688 + BACOVA_00540 0.67 +0.3 39,689 - BACOVA_00540 0.67 -1.2 39,710 + BACOVA_00540 0.68 +0.3 39,712 + BACOVA_00540 0.68 -2.2 39,793 + BACOVA_00540 0.70 -1.3 39,794 - BACOVA_00540 0.70 +1.3 39,813 + BACOVA_00540 0.71 +2.0 39,855 + BACOVA_00540 0.72 -1.6 39,856 - BACOVA_00540 0.73 +2.8 39,913 + BACOVA_00540 0.74 +0.6 39,979 + BACOVA_00540 0.77 -1.0 39,979 + BACOVA_00540 0.77 +1.0 39,988 + BACOVA_00540 0.77 +0.3 40,242 + BACOVA_00540 0.85 -0.9 40,251 + BACOVA_00540 0.86 -0.3 40,251 + BACOVA_00540 0.86 -3.5 40,276 + BACOVA_00540 0.87 -0.2 40,300 - BACOVA_00540 0.87 +0.6 40,320 + BACOVA_00540 0.88 -0.9 40,320 + BACOVA_00540 0.88 +0.8 40,321 - BACOVA_00540 0.88 -1.5 40,321 - BACOVA_00540 0.88 +0.3 40,321 - BACOVA_00540 0.88 -0.2 40,321 - BACOVA_00540 0.88 -0.9 40,341 + BACOVA_00540 0.89 +1.6 40,373 + BACOVA_00540 0.90 -0.2 40,452 + +2.2 40,452 + +0.3 40,497 + -1.4 40,497 + -0.3 40,498 - +0.4 40,498 - +1.1 40,498 - -0.7 40,500 - -0.1 40,501 + +0.5 40,502 - +0.1 40,554 + +0.3 40,576 + -1.2 40,576 + +0.0 40,617 + +0.6 40,621 + -1.2 40,621 + +0.8 40,621 + +0.8 40,622 - +1.8 40,624 + +1.0 40,624 + +2.3 40,634 + -0.0 40,661 - +0.3 40,661 - -0.0 40,661 - -1.3 40,664 + -1.2 40,678 - +0.8 40,777 + +0.4 40,778 - -0.7 40,960 + -0.6 40,964 + +0.7 40,970 + +0.8 41,158 + BACOVA_00542 0.22 -3.0 41,298 + BACOVA_00542 0.50 -0.7 41,387 + BACOVA_00542 0.68 +0.3 41,390 + BACOVA_00542 0.68 -0.2 41,514 + +1.1 41,514 + -0.9 41,566 + +1.6
Or see this region's nucleotide sequence