Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02786

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02785 and BACOVA_02786 are separated by 33 nucleotidesBACOVA_02786 and BACOVA_02787 are separated by 15 nucleotides BACOVA_02785: BACOVA_02785 - hypothetical protein, at 235,647 to 237,164 _02785 BACOVA_02786: BACOVA_02786 - SusD family protein, at 237,198 to 238,688 _02786 BACOVA_02787: BACOVA_02787 - TonB-linked outer membrane protein, SusC/RagA family, at 238,704 to 241,709 _02787 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 236.337 kb on - strand, within BACOVA_02785at 236.365 kb on + strand, within BACOVA_02785at 236.365 kb on + strand, within BACOVA_02785at 236.378 kb on + strand, within BACOVA_02785at 236.379 kb on - strand, within BACOVA_02785at 236.434 kb on + strand, within BACOVA_02785at 236.435 kb on - strand, within BACOVA_02785at 236.435 kb on - strand, within BACOVA_02785at 236.486 kb on + strand, within BACOVA_02785at 236.486 kb on + strand, within BACOVA_02785at 236.487 kb on - strand, within BACOVA_02785at 236.492 kb on - strand, within BACOVA_02785at 236.553 kb on + strand, within BACOVA_02785at 236.554 kb on - strand, within BACOVA_02785at 236.565 kb on - strand, within BACOVA_02785at 236.604 kb on - strand, within BACOVA_02785at 236.707 kb on + strand, within BACOVA_02785at 236.711 kb on + strand, within BACOVA_02785at 236.777 kb on + strand, within BACOVA_02785at 236.777 kb on + strand, within BACOVA_02785at 236.859 kb on - strand, within BACOVA_02785at 236.870 kb on - strand, within BACOVA_02785at 236.870 kb on - strand, within BACOVA_02785at 236.940 kb on - strand, within BACOVA_02785at 236.941 kb on + strand, within BACOVA_02785at 236.948 kb on + strand, within BACOVA_02785at 236.949 kb on - strand, within BACOVA_02785at 236.955 kb on - strand, within BACOVA_02785at 237.009 kb on - strand, within BACOVA_02785at 237.009 kb on - strand, within BACOVA_02785at 237.009 kb on - strand, within BACOVA_02785at 237.074 kb on + strandat 237.074 kb on + strandat 237.075 kb on - strandat 237.086 kb on + strandat 237.150 kb on - strandat 237.150 kb on - strandat 237.167 kb on + strandat 237.189 kb on + strandat 237.190 kb on - strandat 237.199 kb on + strandat 237.345 kb on - strandat 237.550 kb on + strand, within BACOVA_02786at 237.551 kb on + strand, within BACOVA_02786at 237.553 kb on - strand, within BACOVA_02786at 237.555 kb on + strand, within BACOVA_02786at 237.556 kb on - strand, within BACOVA_02786at 237.576 kb on - strand, within BACOVA_02786at 237.576 kb on - strand, within BACOVA_02786at 237.578 kb on + strand, within BACOVA_02786at 237.578 kb on + strand, within BACOVA_02786at 237.614 kb on + strand, within BACOVA_02786at 237.615 kb on - strand, within BACOVA_02786at 237.618 kb on + strand, within BACOVA_02786at 237.653 kb on - strand, within BACOVA_02786at 237.653 kb on - strand, within BACOVA_02786at 237.807 kb on - strand, within BACOVA_02786at 237.866 kb on - strand, within BACOVA_02786at 237.897 kb on - strand, within BACOVA_02786at 237.925 kb on + strand, within BACOVA_02786at 237.925 kb on + strand, within BACOVA_02786at 237.947 kb on - strand, within BACOVA_02786at 237.965 kb on + strand, within BACOVA_02786at 237.966 kb on - strand, within BACOVA_02786at 237.966 kb on - strand, within BACOVA_02786at 237.992 kb on - strand, within BACOVA_02786at 237.992 kb on - strand, within BACOVA_02786at 238.024 kb on + strand, within BACOVA_02786at 238.025 kb on - strand, within BACOVA_02786at 238.087 kb on + strand, within BACOVA_02786at 238.110 kb on - strand, within BACOVA_02786at 238.110 kb on - strand, within BACOVA_02786at 238.110 kb on - strand, within BACOVA_02786at 238.110 kb on - strand, within BACOVA_02786at 238.149 kb on + strand, within BACOVA_02786at 238.150 kb on - strand, within BACOVA_02786at 238.163 kb on + strand, within BACOVA_02786at 238.164 kb on - strand, within BACOVA_02786at 238.247 kb on - strand, within BACOVA_02786at 238.249 kb on + strand, within BACOVA_02786at 238.250 kb on - strand, within BACOVA_02786at 238.252 kb on + strand, within BACOVA_02786at 238.252 kb on + strand, within BACOVA_02786at 238.253 kb on - strand, within BACOVA_02786at 238.253 kb on - strand, within BACOVA_02786at 238.381 kb on + strand, within BACOVA_02786at 238.381 kb on + strand, within BACOVA_02786at 238.381 kb on + strand, within BACOVA_02786at 238.382 kb on - strand, within BACOVA_02786at 238.382 kb on - strand, within BACOVA_02786at 238.382 kb on - strand, within BACOVA_02786at 238.382 kb on - strand, within BACOVA_02786at 238.464 kb on + strand, within BACOVA_02786at 238.475 kb on + strand, within BACOVA_02786at 238.503 kb on - strand, within BACOVA_02786at 238.513 kb on + strand, within BACOVA_02786at 238.513 kb on + strand, within BACOVA_02786at 238.513 kb on + strand, within BACOVA_02786at 238.514 kb on - strand, within BACOVA_02786at 238.517 kb on + strand, within BACOVA_02786at 238.520 kb on + strand, within BACOVA_02786at 238.521 kb on - strand, within BACOVA_02786at 238.521 kb on - strand, within BACOVA_02786at 238.551 kb on - strandat 238.616 kb on + strandat 238.661 kb on + strandat 238.661 kb on + strandat 238.662 kb on - strandat 238.662 kb on - strandat 238.675 kb on - strandat 238.675 kb on - strandat 238.678 kb on - strandat 238.727 kb on + strandat 238.728 kb on - strandat 238.733 kb on - strandat 238.736 kb on + strandat 238.736 kb on + strandat 238.737 kb on - strandat 238.773 kb on - strandat 238.811 kb on + strandat 238.880 kb on + strandat 238.889 kb on + strandat 238.889 kb on + strandat 238.904 kb on + strandat 238.921 kb on + strandat 238.950 kb on + strandat 238.994 kb on + strandat 239.032 kb on - strand, within BACOVA_02787at 239.051 kb on - strand, within BACOVA_02787at 239.092 kb on + strand, within BACOVA_02787at 239.092 kb on + strand, within BACOVA_02787at 239.146 kb on + strand, within BACOVA_02787at 239.156 kb on + strand, within BACOVA_02787at 239.295 kb on + strand, within BACOVA_02787at 239.333 kb on - strand, within BACOVA_02787at 239.343 kb on + strand, within BACOVA_02787at 239.344 kb on - strand, within BACOVA_02787at 239.367 kb on - strand, within BACOVA_02787at 239.372 kb on + strand, within BACOVA_02787at 239.380 kb on + strand, within BACOVA_02787at 239.381 kb on - strand, within BACOVA_02787at 239.402 kb on + strand, within BACOVA_02787at 239.453 kb on + strand, within BACOVA_02787at 239.561 kb on + strand, within BACOVA_02787at 239.564 kb on + strand, within BACOVA_02787at 239.585 kb on + strand, within BACOVA_02787

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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236,337 - BACOVA_02785 0.45 -0.6
236,365 + BACOVA_02785 0.47 +0.2
236,365 + BACOVA_02785 0.47 -0.9
236,378 + BACOVA_02785 0.48 +1.9
236,379 - BACOVA_02785 0.48 +0.9
236,434 + BACOVA_02785 0.52 -0.3
236,435 - BACOVA_02785 0.52 -0.2
236,435 - BACOVA_02785 0.52 -0.4
236,486 + BACOVA_02785 0.55 +0.2
236,486 + BACOVA_02785 0.55 +0.3
236,487 - BACOVA_02785 0.55 +0.7
236,492 - BACOVA_02785 0.56 +0.9
236,553 + BACOVA_02785 0.60 -1.9
236,554 - BACOVA_02785 0.60 -1.7
236,565 - BACOVA_02785 0.60 -1.0
236,604 - BACOVA_02785 0.63 +0.1
236,707 + BACOVA_02785 0.70 -0.3
236,711 + BACOVA_02785 0.70 -0.0
236,777 + BACOVA_02785 0.74 -1.9
236,777 + BACOVA_02785 0.74 -0.2
236,859 - BACOVA_02785 0.80 +0.5
236,870 - BACOVA_02785 0.81 +0.4
236,870 - BACOVA_02785 0.81 -1.2
236,940 - BACOVA_02785 0.85 -0.9
236,941 + BACOVA_02785 0.85 -1.4
236,948 + BACOVA_02785 0.86 +0.6
236,949 - BACOVA_02785 0.86 -0.9
236,955 - BACOVA_02785 0.86 +0.6
237,009 - BACOVA_02785 0.90 -1.1
237,009 - BACOVA_02785 0.90 +0.0
237,009 - BACOVA_02785 0.90 -0.4
237,074 + -0.5
237,074 + +0.0
237,075 - -0.3
237,086 + +0.1
237,150 - +0.2
237,150 - -0.1
237,167 + -0.5
237,189 + +0.9
237,190 - -0.2
237,199 + -0.5
237,345 - +0.9
237,550 + BACOVA_02786 0.24 +0.4
237,551 + BACOVA_02786 0.24 +0.8
237,553 - BACOVA_02786 0.24 +0.2
237,555 + BACOVA_02786 0.24 +0.6
237,556 - BACOVA_02786 0.24 -0.1
237,576 - BACOVA_02786 0.25 -0.5
237,576 - BACOVA_02786 0.25 -1.4
237,578 + BACOVA_02786 0.25 +0.0
237,578 + BACOVA_02786 0.25 -0.7
237,614 + BACOVA_02786 0.28 -0.3
237,615 - BACOVA_02786 0.28 -0.7
237,618 + BACOVA_02786 0.28 +0.9
237,653 - BACOVA_02786 0.31 -0.5
237,653 - BACOVA_02786 0.31 -0.1
237,807 - BACOVA_02786 0.41 +0.3
237,866 - BACOVA_02786 0.45 -0.3
237,897 - BACOVA_02786 0.47 -0.0
237,925 + BACOVA_02786 0.49 +0.2
237,925 + BACOVA_02786 0.49 -0.2
237,947 - BACOVA_02786 0.50 +0.3
237,965 + BACOVA_02786 0.51 +1.4
237,966 - BACOVA_02786 0.52 -0.1
237,966 - BACOVA_02786 0.52 +0.7
237,992 - BACOVA_02786 0.53 -0.2
237,992 - BACOVA_02786 0.53 -1.1
238,024 + BACOVA_02786 0.55 +1.2
238,025 - BACOVA_02786 0.55 +0.7
238,087 + BACOVA_02786 0.60 -0.7
238,110 - BACOVA_02786 0.61 -1.9
238,110 - BACOVA_02786 0.61 +1.5
238,110 - BACOVA_02786 0.61 +0.3
238,110 - BACOVA_02786 0.61 +0.0
238,149 + BACOVA_02786 0.64 -0.3
238,150 - BACOVA_02786 0.64 +0.1
238,163 + BACOVA_02786 0.65 +0.3
238,164 - BACOVA_02786 0.65 -0.0
238,247 - BACOVA_02786 0.70 -0.4
238,249 + BACOVA_02786 0.70 +1.3
238,250 - BACOVA_02786 0.71 +0.9
238,252 + BACOVA_02786 0.71 -0.7
238,252 + BACOVA_02786 0.71 +0.2
238,253 - BACOVA_02786 0.71 +0.7
238,253 - BACOVA_02786 0.71 +0.9
238,381 + BACOVA_02786 0.79 -0.8
238,381 + BACOVA_02786 0.79 +0.3
238,381 + BACOVA_02786 0.79 -0.3
238,382 - BACOVA_02786 0.79 -1.1
238,382 - BACOVA_02786 0.79 +0.2
238,382 - BACOVA_02786 0.79 +0.1
238,382 - BACOVA_02786 0.79 +1.5
238,464 + BACOVA_02786 0.85 +0.0
238,475 + BACOVA_02786 0.86 -0.1
238,503 - BACOVA_02786 0.88 -2.1
238,513 + BACOVA_02786 0.88 +0.7
238,513 + BACOVA_02786 0.88 +0.2
238,513 + BACOVA_02786 0.88 -1.4
238,514 - BACOVA_02786 0.88 +0.2
238,517 + BACOVA_02786 0.88 +1.3
238,520 + BACOVA_02786 0.89 +0.9
238,521 - BACOVA_02786 0.89 +0.5
238,521 - BACOVA_02786 0.89 +0.4
238,551 - -0.3
238,616 + +0.6
238,661 + -0.4
238,661 + -2.1
238,662 - +0.3
238,662 - +0.3
238,675 - -0.7
238,675 - -0.6
238,678 - -0.8
238,727 + +0.3
238,728 - -2.2
238,733 - -0.9
238,736 + -1.1
238,736 + -0.1
238,737 - +0.9
238,773 - -0.3
238,811 + +1.9
238,880 + +0.5
238,889 + +2.3
238,889 + +0.4
238,904 + -0.3
238,921 + -0.5
238,950 + +1.3
238,994 + -0.2
239,032 - BACOVA_02787 0.11 -0.3
239,051 - BACOVA_02787 0.12 +0.6
239,092 + BACOVA_02787 0.13 -0.1
239,092 + BACOVA_02787 0.13 -0.2
239,146 + BACOVA_02787 0.15 +1.5
239,156 + BACOVA_02787 0.15 +0.6
239,295 + BACOVA_02787 0.20 +0.2
239,333 - BACOVA_02787 0.21 -2.3
239,343 + BACOVA_02787 0.21 +0.7
239,344 - BACOVA_02787 0.21 +1.1
239,367 - BACOVA_02787 0.22 -1.0
239,372 + BACOVA_02787 0.22 +2.2
239,380 + BACOVA_02787 0.22 +1.4
239,381 - BACOVA_02787 0.23 +0.7
239,402 + BACOVA_02787 0.23 +0.3
239,453 + BACOVA_02787 0.25 -0.3
239,561 + BACOVA_02787 0.29 +0.2
239,564 + BACOVA_02787 0.29 -0.3
239,585 + BACOVA_02787 0.29 -0.6

Or see this region's nucleotide sequence