Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02656

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02654 and BACOVA_02655 are separated by 17 nucleotidesBACOVA_02655 and BACOVA_02656 are separated by 46 nucleotidesBACOVA_02656 and BACOVA_02657 are separated by 7 nucleotidesBACOVA_02657 and BACOVA_02658 overlap by 156 nucleotidesBACOVA_02658 and BACOVA_02659 are separated by 211 nucleotides BACOVA_02654: BACOVA_02654 - glycosyl hydrolase, family 43, at 54,344 to 55,924 _02654 BACOVA_02655: BACOVA_02655 - hypothetical protein, at 55,942 to 56,046 _02655 BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553 _02656 BACOVA_02657: BACOVA_02657 - hypothetical protein, at 57,561 to 57,782 _02657 BACOVA_02658: BACOVA_02658 - hypothetical protein, at 57,627 to 57,755 _02658 BACOVA_02659: BACOVA_02659 - glycosyl hydrolase family 3 N-terminal domain protein, at 57,967 to 60,327 _02659 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.105 kb on + strand, within BACOVA_02654at 55.106 kb on - strand, within BACOVA_02654at 55.323 kb on + strand, within BACOVA_02654at 55.326 kb on + strand, within BACOVA_02654at 55.327 kb on - strand, within BACOVA_02654at 55.342 kb on + strand, within BACOVA_02654at 55.365 kb on + strand, within BACOVA_02654at 55.389 kb on - strand, within BACOVA_02654at 55.449 kb on + strand, within BACOVA_02654at 55.462 kb on + strand, within BACOVA_02654at 55.562 kb on - strand, within BACOVA_02654at 55.564 kb on + strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.597 kb on + strand, within BACOVA_02654at 55.598 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.611 kb on + strand, within BACOVA_02654at 55.612 kb on - strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.640 kb on - strand, within BACOVA_02654at 55.672 kb on + strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.767 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.852 kb on + strandat 55.927 kb on + strandat 55.929 kb on + strandat 55.931 kb on + strandat 55.944 kb on - strandat 56.034 kb on + strand, within BACOVA_02655at 56.094 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.167 kb on - strandat 56.167 kb on - strandat 56.170 kb on + strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.175 kb on - strandat 56.176 kb on + strandat 56.176 kb on + strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.181 kb on - strandat 56.189 kb on - strandat 56.242 kb on + strand, within BACOVA_02656at 56.265 kb on - strand, within BACOVA_02656at 56.275 kb on + strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.303 kb on + strand, within BACOVA_02656at 56.421 kb on + strand, within BACOVA_02656at 56.641 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.734 kb on - strand, within BACOVA_02656at 56.767 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.850 kb on - strand, within BACOVA_02656at 56.910 kb on - strand, within BACOVA_02656at 56.960 kb on + strand, within BACOVA_02656at 57.052 kb on + strand, within BACOVA_02656at 57.053 kb on - strand, within BACOVA_02656at 57.054 kb on + strand, within BACOVA_02656at 57.054 kb on + strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.057 kb on + strand, within BACOVA_02656at 57.058 kb on - strand, within BACOVA_02656at 57.069 kb on - strand, within BACOVA_02656at 57.190 kb on + strand, within BACOVA_02656at 57.242 kb on + strand, within BACOVA_02656at 57.243 kb on - strand, within BACOVA_02656at 57.246 kb on + strand, within BACOVA_02656at 57.247 kb on - strand, within BACOVA_02656at 57.306 kb on + strand, within BACOVA_02656at 57.309 kb on - strand, within BACOVA_02656at 57.311 kb on + strand, within BACOVA_02656at 57.312 kb on - strand, within BACOVA_02656at 57.354 kb on + strand, within BACOVA_02656at 57.391 kb on - strand, within BACOVA_02656at 57.485 kb on - strandat 57.487 kb on + strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.654 kb on - strandat 57.657 kb on - strandat 57.702 kb on - strandat 57.722 kb on + strandat 57.746 kb on + strandat 57.810 kb on - strandat 57.816 kb on - strandat 57.816 kb on - strandat 57.816 kb on - strandat 57.840 kb on + strandat 57.840 kb on + strandat 57.850 kb on + strandat 57.863 kb on - strandat 57.880 kb on - strandat 57.923 kb on - strandat 57.939 kb on + strandat 57.940 kb on - strandat 57.959 kb on - strandat 57.990 kb on - strandat 57.990 kb on - strandat 57.992 kb on + strandat 57.992 kb on + strandat 57.992 kb on + strandat 57.993 kb on - strandat 57.993 kb on - strandat 57.995 kb on + strandat 58.068 kb on + strandat 58.175 kb on + strandat 58.228 kb on + strand, within BACOVA_02659at 58.228 kb on + strand, within BACOVA_02659at 58.230 kb on + strand, within BACOVA_02659at 58.231 kb on - strand, within BACOVA_02659at 58.235 kb on + strand, within BACOVA_02659at 58.236 kb on - strand, within BACOVA_02659at 58.378 kb on + strand, within BACOVA_02659at 58.395 kb on + strand, within BACOVA_02659at 58.471 kb on + strand, within BACOVA_02659at 58.472 kb on - strand, within BACOVA_02659at 58.472 kb on - strand, within BACOVA_02659at 58.524 kb on - strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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55,105 + BACOVA_02654 0.48 -0.2
55,106 - BACOVA_02654 0.48 +0.4
55,323 + BACOVA_02654 0.62 -0.3
55,326 + BACOVA_02654 0.62 +0.7
55,327 - BACOVA_02654 0.62 -0.3
55,342 + BACOVA_02654 0.63 -0.9
55,365 + BACOVA_02654 0.65 -1.0
55,389 - BACOVA_02654 0.66 -0.4
55,449 + BACOVA_02654 0.70 +0.8
55,462 + BACOVA_02654 0.71 +0.1
55,562 - BACOVA_02654 0.77 -2.3
55,564 + BACOVA_02654 0.77 -0.1
55,565 - BACOVA_02654 0.77 -0.7
55,565 - BACOVA_02654 0.77 -0.7
55,565 - BACOVA_02654 0.77 -0.5
55,597 + BACOVA_02654 0.79 +0.1
55,598 - BACOVA_02654 0.79 -0.1
55,604 - BACOVA_02654 0.80 +0.3
55,604 - BACOVA_02654 0.80 -0.8
55,611 + BACOVA_02654 0.80 -0.1
55,612 - BACOVA_02654 0.80 -2.7
55,629 + BACOVA_02654 0.81 +1.7
55,629 + BACOVA_02654 0.81 +0.5
55,640 - BACOVA_02654 0.82 +0.4
55,672 + BACOVA_02654 0.84 -0.4
55,713 - BACOVA_02654 0.87 +0.3
55,713 - BACOVA_02654 0.87 -0.2
55,767 + -0.8
55,791 + -0.5
55,791 + +0.6
55,791 + -0.6
55,792 - +1.8
55,792 - -0.2
55,792 - -1.5
55,852 + -1.1
55,927 + -0.2
55,929 + +0.1
55,931 + +0.0
55,944 - -0.7
56,034 + BACOVA_02655 0.88 -0.8
56,094 + +0.5
56,166 + -0.3
56,166 + -0.6
56,166 + -0.9
56,167 - -2.2
56,167 - -0.1
56,170 + -0.3
56,171 - -0.7
56,171 - -0.9
56,171 - +0.0
56,171 - +0.2
56,175 - -1.2
56,176 + -0.3
56,176 + -0.9
56,177 - +0.6
56,177 - +0.2
56,177 - -0.7
56,181 - +0.1
56,189 - -0.1
56,242 + BACOVA_02656 0.10 +0.4
56,265 - BACOVA_02656 0.12 -0.1
56,275 + BACOVA_02656 0.12 +0.3
56,276 - BACOVA_02656 0.13 +0.3
56,276 - BACOVA_02656 0.13 +0.1
56,277 + BACOVA_02656 0.13 +1.1
56,277 + BACOVA_02656 0.13 +0.9
56,303 + BACOVA_02656 0.14 +0.7
56,421 + BACOVA_02656 0.22 +0.1
56,641 + BACOVA_02656 0.38 -0.2
56,733 + BACOVA_02656 0.44 +1.3
56,733 + BACOVA_02656 0.44 +1.2
56,733 + BACOVA_02656 0.44 +0.1
56,734 - BACOVA_02656 0.44 +0.1
56,767 + BACOVA_02656 0.46 -0.0
56,801 + BACOVA_02656 0.48 -0.0
56,801 + BACOVA_02656 0.48 -0.2
56,801 + BACOVA_02656 0.48 +0.5
56,850 - BACOVA_02656 0.52 +0.6
56,910 - BACOVA_02656 0.56 +0.9
56,960 + BACOVA_02656 0.59 -0.4
57,052 + BACOVA_02656 0.66 +1.1
57,053 - BACOVA_02656 0.66 -0.1
57,054 + BACOVA_02656 0.66 +1.2
57,054 + BACOVA_02656 0.66 -0.3
57,055 - BACOVA_02656 0.66 -0.3
57,055 - BACOVA_02656 0.66 +0.4
57,055 - BACOVA_02656 0.66 -0.2
57,057 + BACOVA_02656 0.66 -0.3
57,058 - BACOVA_02656 0.66 +0.2
57,069 - BACOVA_02656 0.67 +0.7
57,190 + BACOVA_02656 0.75 +1.6
57,242 + BACOVA_02656 0.79 +0.3
57,243 - BACOVA_02656 0.79 -0.4
57,246 + BACOVA_02656 0.79 -0.6
57,247 - BACOVA_02656 0.79 +0.5
57,306 + BACOVA_02656 0.83 +0.2
57,309 - BACOVA_02656 0.83 +0.7
57,311 + BACOVA_02656 0.83 -0.5
57,312 - BACOVA_02656 0.83 -0.5
57,354 + BACOVA_02656 0.86 -1.1
57,391 - BACOVA_02656 0.89 +0.3
57,485 - -0.2
57,487 + -0.9
57,530 - +0.9
57,530 - +0.3
57,530 - -0.2
57,530 - -0.4
57,654 - -0.1
57,657 - +1.3
57,702 - +0.9
57,722 + -1.2
57,746 + -0.2
57,810 - -0.2
57,816 - -0.3
57,816 - +0.2
57,816 - -0.5
57,840 + +0.1
57,840 + +0.4
57,850 + +0.2
57,863 - -0.5
57,880 - +0.3
57,923 - -1.1
57,939 + -0.7
57,940 - +0.5
57,959 - -0.6
57,990 - -1.0
57,990 - -0.4
57,992 + +0.4
57,992 + +0.1
57,992 + +0.1
57,993 - +0.0
57,993 - -0.1
57,995 + +0.3
58,068 + +0.6
58,175 + +0.9
58,228 + BACOVA_02659 0.11 +0.1
58,228 + BACOVA_02659 0.11 -0.3
58,230 + BACOVA_02659 0.11 -0.3
58,231 - BACOVA_02659 0.11 -0.9
58,235 + BACOVA_02659 0.11 -0.2
58,236 - BACOVA_02659 0.11 -0.3
58,378 + BACOVA_02659 0.17 -0.1
58,395 + BACOVA_02659 0.18 +0.4
58,471 + BACOVA_02659 0.21 -0.1
58,472 - BACOVA_02659 0.21 +0.0
58,472 - BACOVA_02659 0.21 +0.2
58,524 - BACOVA_02659 0.24 +0.5
58,548 + BACOVA_02659 0.25 +0.1
58,548 + BACOVA_02659 0.25 +0.1
58,548 + BACOVA_02659 0.25 -0.5
58,548 + BACOVA_02659 0.25 -0.1

Or see this region's nucleotide sequence