Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00897

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00895 and BACOVA_00896 are separated by 62 nucleotidesBACOVA_00896 and BACOVA_00897 are separated by 30 nucleotidesBACOVA_00897 and BACOVA_00898 are separated by 2 nucleotides BACOVA_00895: BACOVA_00895 - Holliday junction DNA helicase RuvB, at 23,907 to 24,938 _00895 BACOVA_00896: BACOVA_00896 - phospholipase/carboxylesterase, at 25,001 to 25,777 _00896 BACOVA_00897: BACOVA_00897 - polysaccharide biosynthesis protein, at 25,808 to 27,304 _00897 BACOVA_00898: BACOVA_00898 - hydrophobic domain protein, at 27,307 to 28,662 _00898 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 24.884 kb on + strandat 24.941 kb on + strandat 24.941 kb on + strandat 24.974 kb on + strandat 24.987 kb on + strandat 24.987 kb on + strandat 25.018 kb on + strandat 25.018 kb on + strandat 25.096 kb on + strand, within BACOVA_00896at 25.265 kb on + strand, within BACOVA_00896at 25.281 kb on + strand, within BACOVA_00896at 25.318 kb on + strand, within BACOVA_00896at 25.318 kb on + strand, within BACOVA_00896at 25.380 kb on + strand, within BACOVA_00896at 25.448 kb on + strand, within BACOVA_00896at 25.484 kb on + strand, within BACOVA_00896at 25.484 kb on + strand, within BACOVA_00896at 25.645 kb on + strand, within BACOVA_00896at 25.645 kb on + strand, within BACOVA_00896at 25.679 kb on + strand, within BACOVA_00896at 25.679 kb on + strand, within BACOVA_00896at 25.699 kb on + strand, within BACOVA_00896at 25.792 kb on + strandat 25.799 kb on + strandat 27.302 kb on + strandat 27.302 kb on + strandat 27.307 kb on - strandat 27.307 kb on - strandat 27.307 kb on - strandat 27.378 kb on + strandat 27.464 kb on + strand, within BACOVA_00898at 27.508 kb on - strand, within BACOVA_00898at 27.546 kb on + strand, within BACOVA_00898at 27.546 kb on + strand, within BACOVA_00898at 27.547 kb on - strand, within BACOVA_00898at 27.549 kb on + strand, within BACOVA_00898at 27.590 kb on + strand, within BACOVA_00898at 27.591 kb on - strand, within BACOVA_00898at 27.643 kb on - strand, within BACOVA_00898at 27.706 kb on - strand, within BACOVA_00898at 27.706 kb on - strand, within BACOVA_00898at 27.717 kb on + strand, within BACOVA_00898at 27.721 kb on + strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.774 kb on + strand, within BACOVA_00898at 27.933 kb on + strand, within BACOVA_00898at 28.004 kb on + strand, within BACOVA_00898at 28.008 kb on + strand, within BACOVA_00898at 28.009 kb on - strand, within BACOVA_00898at 28.013 kb on - strand, within BACOVA_00898at 28.028 kb on + strand, within BACOVA_00898at 28.029 kb on - strand, within BACOVA_00898at 28.035 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.111 kb on - strand, within BACOVA_00898at 28.113 kb on - strand, within BACOVA_00898at 28.138 kb on - strand, within BACOVA_00898at 28.145 kb on + strand, within BACOVA_00898at 28.146 kb on - strand, within BACOVA_00898at 28.152 kb on + strand, within BACOVA_00898at 28.165 kb on + strand, within BACOVA_00898at 28.166 kb on - strand, within BACOVA_00898at 28.223 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.228 kb on - strand, within BACOVA_00898at 28.281 kb on - strand, within BACOVA_00898at 28.283 kb on + strand, within BACOVA_00898at 28.296 kb on - strand, within BACOVA_00898

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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24,884 + -1.5
24,941 + -0.2
24,941 + +1.0
24,974 + -0.2
24,987 + +0.5
24,987 + -2.3
25,018 + +0.3
25,018 + -0.2
25,096 + BACOVA_00896 0.12 -1.5
25,265 + BACOVA_00896 0.34 +0.2
25,281 + BACOVA_00896 0.36 -0.0
25,318 + BACOVA_00896 0.41 -1.1
25,318 + BACOVA_00896 0.41 +0.5
25,380 + BACOVA_00896 0.49 +1.2
25,448 + BACOVA_00896 0.58 -0.2
25,484 + BACOVA_00896 0.62 -0.3
25,484 + BACOVA_00896 0.62 +1.0
25,645 + BACOVA_00896 0.83 -0.2
25,645 + BACOVA_00896 0.83 -0.0
25,679 + BACOVA_00896 0.87 -0.0
25,679 + BACOVA_00896 0.87 -0.8
25,699 + BACOVA_00896 0.90 -0.0
25,792 + -1.4
25,799 + +0.8
27,302 + -0.1
27,302 + -0.4
27,307 - -0.3
27,307 - -0.2
27,307 - +1.7
27,378 + +0.7
27,464 + BACOVA_00898 0.12 -0.1
27,508 - BACOVA_00898 0.15 -0.6
27,546 + BACOVA_00898 0.18 -1.0
27,546 + BACOVA_00898 0.18 +0.2
27,547 - BACOVA_00898 0.18 +0.6
27,549 + BACOVA_00898 0.18 -0.0
27,590 + BACOVA_00898 0.21 +0.3
27,591 - BACOVA_00898 0.21 +0.6
27,643 - BACOVA_00898 0.25 +1.2
27,706 - BACOVA_00898 0.29 -1.6
27,706 - BACOVA_00898 0.29 -1.0
27,717 + BACOVA_00898 0.30 +0.3
27,721 + BACOVA_00898 0.31 +0.1
27,729 - BACOVA_00898 0.31 +0.0
27,729 - BACOVA_00898 0.31 -1.0
27,729 - BACOVA_00898 0.31 -1.0
27,774 + BACOVA_00898 0.34 -0.3
27,933 + BACOVA_00898 0.46 -1.0
28,004 + BACOVA_00898 0.51 -0.2
28,008 + BACOVA_00898 0.52 +1.0
28,009 - BACOVA_00898 0.52 +0.3
28,013 - BACOVA_00898 0.52 +1.0
28,028 + BACOVA_00898 0.53 -0.6
28,029 - BACOVA_00898 0.53 +0.4
28,035 + BACOVA_00898 0.54 +0.3
28,087 + BACOVA_00898 0.58 -0.2
28,087 + BACOVA_00898 0.58 +0.7
28,087 + BACOVA_00898 0.58 +0.4
28,111 - BACOVA_00898 0.59 +0.0
28,113 - BACOVA_00898 0.59 +0.6
28,138 - BACOVA_00898 0.61 +0.3
28,145 + BACOVA_00898 0.62 -1.3
28,146 - BACOVA_00898 0.62 +0.1
28,152 + BACOVA_00898 0.62 -0.3
28,165 + BACOVA_00898 0.63 +0.3
28,166 - BACOVA_00898 0.63 -0.5
28,223 + BACOVA_00898 0.68 +0.7
28,227 + BACOVA_00898 0.68 -0.9
28,227 + BACOVA_00898 0.68 +0.8
28,227 + BACOVA_00898 0.68 +0.3
28,228 - BACOVA_00898 0.68 -0.2
28,281 - BACOVA_00898 0.72 +0.2
28,283 + BACOVA_00898 0.72 +0.5
28,296 - BACOVA_00898 0.73 +0.4

Or see this region's nucleotide sequence