Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03814

Experiment: R2A 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03813 and BACOVA_03814 are separated by 113 nucleotidesBACOVA_03814 and BACOVA_03815 are separated by 454 nucleotides BACOVA_03813: BACOVA_03813 - TonB-dependent receptor, at 157,384 to 159,723 _03813 BACOVA_03814: BACOVA_03814 - hypothetical protein, at 159,837 to 159,983 _03814 BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624 _03815 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2 3at 158.870 kb on + strand, within BACOVA_03813at 158.871 kb on - strand, within BACOVA_03813at 158.986 kb on + strand, within BACOVA_03813at 159.071 kb on - strand, within BACOVA_03813at 159.084 kb on + strand, within BACOVA_03813at 159.133 kb on + strand, within BACOVA_03813at 159.164 kb on + strand, within BACOVA_03813at 159.328 kb on - strand, within BACOVA_03813at 159.361 kb on + strand, within BACOVA_03813at 159.437 kb on - strand, within BACOVA_03813at 159.459 kb on - strand, within BACOVA_03813at 159.471 kb on + strand, within BACOVA_03813at 159.617 kb on - strandat 159.759 kb on - strandat 159.762 kb on - strandat 159.807 kb on - strandat 159.807 kb on - strandat 159.811 kb on + strandat 159.812 kb on - strandat 159.812 kb on - strandat 159.868 kb on - strand, within BACOVA_03814at 159.868 kb on - strand, within BACOVA_03814at 159.925 kb on - strand, within BACOVA_03814at 159.933 kb on + strand, within BACOVA_03814at 159.933 kb on + strand, within BACOVA_03814at 159.933 kb on + strand, within BACOVA_03814at 159.934 kb on - strand, within BACOVA_03814at 159.934 kb on - strand, within BACOVA_03814at 159.958 kb on - strand, within BACOVA_03814at 160.002 kb on + strandat 160.002 kb on + strandat 160.023 kb on - strandat 160.029 kb on - strandat 160.070 kb on + strandat 160.135 kb on - strandat 160.155 kb on + strandat 160.156 kb on - strandat 160.157 kb on + strandat 160.158 kb on - strandat 160.165 kb on + strandat 160.166 kb on - strandat 160.197 kb on + strandat 160.198 kb on - strandat 160.198 kb on - strandat 160.211 kb on - strandat 160.242 kb on + strandat 160.271 kb on + strandat 160.275 kb on + strandat 160.276 kb on - strandat 160.287 kb on - strandat 160.355 kb on + strandat 160.355 kb on + strandat 160.356 kb on - strandat 160.359 kb on + strandat 160.360 kb on - strandat 160.458 kb on - strandat 160.577 kb on + strandat 160.577 kb on + strandat 160.578 kb on - strandat 160.596 kb on + strandat 160.597 kb on - strandat 160.597 kb on - strandat 160.601 kb on - strandat 160.620 kb on - strandat 160.641 kb on - strandat 160.641 kb on - strandat 160.641 kb on - strandat 160.752 kb on + strand, within BACOVA_03815at 160.761 kb on - strand, within BACOVA_03815at 160.761 kb on - strand, within BACOVA_03815at 160.815 kb on - strand, within BACOVA_03815at 160.821 kb on + strand, within BACOVA_03815at 160.822 kb on - strand, within BACOVA_03815at 160.867 kb on + strand, within BACOVA_03815at 160.867 kb on + strand, within BACOVA_03815at 160.876 kb on + strand, within BACOVA_03815at 160.877 kb on - strand, within BACOVA_03815at 160.897 kb on + strand, within BACOVA_03815at 160.935 kb on - strand, within BACOVA_03815at 160.939 kb on - strand, within BACOVA_03815

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 1 x (C) complex media
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158,870 + BACOVA_03813 0.64 -0.2
158,871 - BACOVA_03813 0.64 +0.2
158,986 + BACOVA_03813 0.68 -0.2
159,071 - BACOVA_03813 0.72 -2.0
159,084 + BACOVA_03813 0.73 -0.0
159,133 + BACOVA_03813 0.75 -0.2
159,164 + BACOVA_03813 0.76 -0.7
159,328 - BACOVA_03813 0.83 -0.8
159,361 + BACOVA_03813 0.84 +1.2
159,437 - BACOVA_03813 0.88 -2.2
159,459 - BACOVA_03813 0.89 +0.5
159,471 + BACOVA_03813 0.89 -1.8
159,617 - -0.4
159,759 - -0.5
159,762 - -0.8
159,807 - +1.8
159,807 - -1.2
159,811 + -1.0
159,812 - -0.4
159,812 - -0.7
159,868 - BACOVA_03814 0.21 +0.3
159,868 - BACOVA_03814 0.21 -1.8
159,925 - BACOVA_03814 0.60 -1.7
159,933 + BACOVA_03814 0.65 +0.5
159,933 + BACOVA_03814 0.65 +0.8
159,933 + BACOVA_03814 0.65 +1.2
159,934 - BACOVA_03814 0.66 +1.1
159,934 - BACOVA_03814 0.66 +1.0
159,958 - BACOVA_03814 0.82 -0.5
160,002 + -0.9
160,002 + +0.4
160,023 - +0.5
160,029 - +0.4
160,070 + -0.6
160,135 - -0.4
160,155 + +0.3
160,156 - -1.7
160,157 + -0.8
160,158 - +0.8
160,165 + +0.2
160,166 - -0.1
160,197 + +0.8
160,198 - -0.3
160,198 - +0.2
160,211 - -0.2
160,242 + +1.8
160,271 + +2.8
160,275 + +0.4
160,276 - +1.0
160,287 - -0.2
160,355 + +0.1
160,355 + +1.3
160,356 - +0.2
160,359 + -0.2
160,360 - -0.8
160,458 - -1.5
160,577 + -1.2
160,577 + -0.4
160,578 - +0.2
160,596 + -1.1
160,597 - -0.2
160,597 - +1.1
160,601 - +0.8
160,620 - +1.3
160,641 - -0.6
160,641 - -0.2
160,641 - -0.5
160,752 + BACOVA_03815 0.14 +0.1
160,761 - BACOVA_03815 0.15 -0.2
160,761 - BACOVA_03815 0.15 +0.2
160,815 - BACOVA_03815 0.17 -0.0
160,821 + BACOVA_03815 0.18 +1.0
160,822 - BACOVA_03815 0.18 +0.8
160,867 + BACOVA_03815 0.20 -0.1
160,867 + BACOVA_03815 0.20 -1.2
160,876 + BACOVA_03815 0.20 -0.2
160,877 - BACOVA_03815 0.20 -0.2
160,897 + BACOVA_03815 0.21 +0.3
160,935 - BACOVA_03815 0.23 +0.1
160,939 - BACOVA_03815 0.23 -0.6

Or see this region's nucleotide sequence