Experiment: R2A 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02237 and BACOVA_02238 are separated by 5 nucleotides BACOVA_02238 and BACOVA_02239 overlap by 4 nucleotides BACOVA_02239 and BACOVA_02240 are separated by 14 nucleotides
BACOVA_02237: BACOVA_02237 - electron transport complex, RnfABCDGE type, C subunit, at 16,556 to 17,893
_02237
BACOVA_02238: BACOVA_02238 - electron transport complex, RnfABCDGE type, D subunit, at 17,899 to 18,891
_02238
BACOVA_02239: BACOVA_02239 - electron transport complex, RnfABCDGE type, G subunit, at 18,888 to 19,634
_02239
BACOVA_02240: BACOVA_02240 - electron transport complex, RnfABCDGE type, E subunit, at 19,649 to 20,233
_02240
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.987 kb on + strand, within BACOVA_02237 at 17.116 kb on - strand, within BACOVA_02237 at 17.177 kb on - strand, within BACOVA_02237 at 17.180 kb on - strand, within BACOVA_02237 at 17.207 kb on - strand, within BACOVA_02237 at 17.329 kb on + strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.525 kb on - strand, within BACOVA_02237 at 17.587 kb on + strand, within BACOVA_02237 at 17.709 kb on - strand, within BACOVA_02237 at 17.777 kb on - strand at 17.899 kb on - strand at 17.918 kb on + strand at 17.919 kb on - strand at 17.955 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 18.166 kb on - strand, within BACOVA_02238 at 18.196 kb on - strand, within BACOVA_02238 at 18.232 kb on - strand, within BACOVA_02238 at 18.252 kb on - strand, within BACOVA_02238 at 18.394 kb on - strand, within BACOVA_02238 at 18.410 kb on - strand, within BACOVA_02238 at 18.524 kb on - strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.848 kb on - strand at 18.899 kb on - strand at 18.973 kb on + strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.248 kb on + strand, within BACOVA_02239 at 19.249 kb on - strand, within BACOVA_02239 at 19.315 kb on - strand, within BACOVA_02239 at 19.343 kb on - strand, within BACOVA_02239 at 19.359 kb on - strand, within BACOVA_02239 at 19.367 kb on + strand, within BACOVA_02239 at 19.497 kb on + strand, within BACOVA_02239 at 19.500 kb on - strand, within BACOVA_02239 at 19.649 kb on - strand at 19.661 kb on - strand at 19.666 kb on - strand at 19.718 kb on - strand, within BACOVA_02240 at 19.726 kb on + strand, within BACOVA_02240 at 19.739 kb on - strand, within BACOVA_02240 at 19.759 kb on + strand, within BACOVA_02240 at 19.760 kb on - strand, within BACOVA_02240 at 19.778 kb on - strand, within BACOVA_02240 at 19.789 kb on - strand, within BACOVA_02240
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 1 x (C) complex media remove 16,987 + BACOVA_02237 0.32 -2.7 17,116 - BACOVA_02237 0.42 -1.5 17,177 - BACOVA_02237 0.46 +0.8 17,180 - BACOVA_02237 0.47 -0.9 17,207 - BACOVA_02237 0.49 -0.8 17,329 + BACOVA_02237 0.58 -0.2 17,330 - BACOVA_02237 0.58 +0.3 17,330 - BACOVA_02237 0.58 -0.0 17,525 - BACOVA_02237 0.72 +0.1 17,587 + BACOVA_02237 0.77 -0.8 17,709 - BACOVA_02237 0.86 -1.2 17,777 - -1.9 17,899 - -1.7 17,918 + -1.5 17,919 - -0.8 17,955 - +0.8 17,969 - -1.2 17,969 - +0.4 17,969 - -1.3 17,969 - -1.0 18,166 - BACOVA_02238 0.27 -0.2 18,196 - BACOVA_02238 0.30 +0.5 18,232 - BACOVA_02238 0.34 +0.8 18,252 - BACOVA_02238 0.36 +0.1 18,394 - BACOVA_02238 0.50 -1.5 18,410 - BACOVA_02238 0.51 -1.7 18,524 - BACOVA_02238 0.63 -0.2 18,525 + BACOVA_02238 0.63 -1.2 18,525 + BACOVA_02238 0.63 -2.0 18,526 - BACOVA_02238 0.63 -1.3 18,526 - BACOVA_02238 0.63 -0.2 18,556 - BACOVA_02238 0.66 -0.2 18,556 - BACOVA_02238 0.66 -0.2 18,695 - BACOVA_02238 0.80 -2.0 18,695 - BACOVA_02238 0.80 +0.2 18,734 - BACOVA_02238 0.84 -0.6 18,734 - BACOVA_02238 0.84 -2.5 18,740 + BACOVA_02238 0.85 -1.2 18,740 + BACOVA_02238 0.85 -1.5 18,741 - BACOVA_02238 0.85 -1.6 18,741 - BACOVA_02238 0.85 -0.7 18,741 - BACOVA_02238 0.85 +0.1 18,741 - BACOVA_02238 0.85 -0.8 18,848 - +0.4 18,899 - -2.4 18,973 + BACOVA_02239 0.11 -0.8 19,056 - BACOVA_02239 0.22 -0.2 19,056 - BACOVA_02239 0.22 -0.7 19,056 - BACOVA_02239 0.22 -1.8 19,056 - BACOVA_02239 0.22 -0.5 19,248 + BACOVA_02239 0.48 -0.8 19,249 - BACOVA_02239 0.48 -0.2 19,315 - BACOVA_02239 0.57 -1.8 19,343 - BACOVA_02239 0.61 -0.2 19,359 - BACOVA_02239 0.63 -0.3 19,367 + BACOVA_02239 0.64 -0.2 19,497 + BACOVA_02239 0.82 +1.4 19,500 - BACOVA_02239 0.82 -0.4 19,649 - -2.0 19,661 - -0.8 19,666 - -1.3 19,718 - BACOVA_02240 0.12 -1.5 19,726 + BACOVA_02240 0.13 -0.8 19,739 - BACOVA_02240 0.15 +0.2 19,759 + BACOVA_02240 0.19 +0.8 19,760 - BACOVA_02240 0.19 -2.5 19,778 - BACOVA_02240 0.22 -1.5 19,789 - BACOVA_02240 0.24 -1.5
Or see this region's nucleotide sequence