Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01279

Experiment: R2A 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01277 and BACOVA_01278 are separated by 46 nucleotidesBACOVA_01278 and BACOVA_01279 are separated by 156 nucleotidesBACOVA_01279 and BACOVA_01280 overlap by 17 nucleotidesBACOVA_01280 and BACOVA_01281 are separated by 46 nucleotides BACOVA_01277: BACOVA_01277 - transporter, major facilitator family protein, at 64,479 to 65,654 _01277 BACOVA_01278: BACOVA_01278 - hypothetical protein, at 65,701 to 66,135 _01278 BACOVA_01279: BACOVA_01279 - Na+/H+ antiporter NhaC, at 66,292 to 67,719 _01279 BACOVA_01280: BACOVA_01280 - hypothetical protein, at 67,703 to 68,377 _01280 BACOVA_01281: BACOVA_01281 - transcriptional regulator, LuxR family, at 68,424 to 69,125 _01281 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.296 kb on - strand, within BACOVA_01277at 65.300 kb on - strand, within BACOVA_01277at 65.308 kb on + strand, within BACOVA_01277at 65.308 kb on + strand, within BACOVA_01277at 65.390 kb on + strand, within BACOVA_01277at 65.390 kb on + strand, within BACOVA_01277at 65.397 kb on - strand, within BACOVA_01277at 65.426 kb on - strand, within BACOVA_01277at 65.426 kb on - strand, within BACOVA_01277at 65.438 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.448 kb on - strand, within BACOVA_01277at 65.501 kb on + strand, within BACOVA_01277at 65.520 kb on + strand, within BACOVA_01277at 65.521 kb on - strand, within BACOVA_01277at 65.574 kb on + strandat 65.575 kb on - strandat 65.630 kb on - strandat 65.633 kb on + strandat 65.633 kb on + strandat 65.686 kb on - strandat 65.729 kb on + strandat 65.773 kb on - strand, within BACOVA_01278at 65.784 kb on - strand, within BACOVA_01278at 65.792 kb on + strand, within BACOVA_01278at 65.801 kb on + strand, within BACOVA_01278at 65.841 kb on + strand, within BACOVA_01278at 65.899 kb on - strand, within BACOVA_01278at 65.971 kb on - strand, within BACOVA_01278at 66.009 kb on + strand, within BACOVA_01278at 66.010 kb on - strand, within BACOVA_01278at 66.049 kb on + strand, within BACOVA_01278at 66.111 kb on - strandat 66.118 kb on - strandat 66.130 kb on - strandat 66.144 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.147 kb on - strandat 66.147 kb on - strandat 66.150 kb on + strandat 66.150 kb on + strandat 66.150 kb on + strandat 66.151 kb on - strandat 66.257 kb on - strandat 66.272 kb on - strandat 66.281 kb on + strandat 66.282 kb on - strandat 66.318 kb on - strandat 66.338 kb on + strandat 66.339 kb on - strandat 66.347 kb on + strandat 66.350 kb on + strandat 66.430 kb on - strandat 66.460 kb on - strand, within BACOVA_01279at 66.528 kb on + strand, within BACOVA_01279at 66.533 kb on + strand, within BACOVA_01279at 66.579 kb on - strand, within BACOVA_01279at 66.585 kb on + strand, within BACOVA_01279at 66.585 kb on + strand, within BACOVA_01279at 66.691 kb on - strand, within BACOVA_01279at 66.699 kb on + strand, within BACOVA_01279at 66.700 kb on - strand, within BACOVA_01279at 66.700 kb on - strand, within BACOVA_01279at 66.838 kb on - strand, within BACOVA_01279at 66.838 kb on - strand, within BACOVA_01279at 66.882 kb on + strand, within BACOVA_01279at 66.886 kb on - strand, within BACOVA_01279at 66.916 kb on - strand, within BACOVA_01279at 66.955 kb on - strand, within BACOVA_01279at 67.016 kb on + strand, within BACOVA_01279at 67.023 kb on - strand, within BACOVA_01279at 67.069 kb on - strand, within BACOVA_01279at 67.191 kb on - strand, within BACOVA_01279at 67.191 kb on - strand, within BACOVA_01279at 67.204 kb on + strand, within BACOVA_01279at 67.221 kb on - strand, within BACOVA_01279at 67.250 kb on + strand, within BACOVA_01279at 67.250 kb on + strand, within BACOVA_01279at 67.251 kb on - strand, within BACOVA_01279at 67.285 kb on - strand, within BACOVA_01279at 67.285 kb on - strand, within BACOVA_01279at 67.298 kb on + strand, within BACOVA_01279at 67.301 kb on + strand, within BACOVA_01279at 67.301 kb on + strand, within BACOVA_01279at 67.301 kb on + strand, within BACOVA_01279at 67.301 kb on + strand, within BACOVA_01279at 67.302 kb on - strand, within BACOVA_01279at 67.354 kb on - strand, within BACOVA_01279at 67.354 kb on - strand, within BACOVA_01279at 67.455 kb on + strand, within BACOVA_01279at 67.461 kb on + strand, within BACOVA_01279at 67.464 kb on + strand, within BACOVA_01279at 67.492 kb on - strand, within BACOVA_01279at 67.495 kb on + strand, within BACOVA_01279at 67.557 kb on + strand, within BACOVA_01279at 67.558 kb on - strand, within BACOVA_01279at 67.566 kb on - strand, within BACOVA_01279at 67.630 kb on + strandat 67.656 kb on + strandat 67.657 kb on - strandat 67.668 kb on - strandat 67.698 kb on + strandat 67.806 kb on + strand, within BACOVA_01280at 67.815 kb on + strand, within BACOVA_01280at 67.815 kb on + strand, within BACOVA_01280at 67.816 kb on - strand, within BACOVA_01280at 67.816 kb on - strand, within BACOVA_01280at 67.816 kb on - strand, within BACOVA_01280at 67.818 kb on + strand, within BACOVA_01280at 67.818 kb on + strand, within BACOVA_01280at 67.819 kb on - strand, within BACOVA_01280at 67.822 kb on - strand, within BACOVA_01280at 67.844 kb on + strand, within BACOVA_01280at 67.844 kb on + strand, within BACOVA_01280at 67.845 kb on - strand, within BACOVA_01280at 67.965 kb on + strand, within BACOVA_01280at 68.002 kb on + strand, within BACOVA_01280at 68.002 kb on + strand, within BACOVA_01280at 68.027 kb on - strand, within BACOVA_01280at 68.027 kb on - strand, within BACOVA_01280at 68.088 kb on + strand, within BACOVA_01280at 68.089 kb on - strand, within BACOVA_01280at 68.128 kb on + strand, within BACOVA_01280at 68.140 kb on + strand, within BACOVA_01280at 68.145 kb on + strand, within BACOVA_01280at 68.145 kb on + strand, within BACOVA_01280at 68.153 kb on - strand, within BACOVA_01280at 68.241 kb on + strand, within BACOVA_01280at 68.248 kb on + strand, within BACOVA_01280at 68.251 kb on + strand, within BACOVA_01280at 68.252 kb on - strand, within BACOVA_01280at 68.269 kb on + strand, within BACOVA_01280at 68.270 kb on - strand, within BACOVA_01280at 68.285 kb on - strand, within BACOVA_01280at 68.330 kb on - strandat 68.437 kb on + strandat 68.477 kb on + strandat 68.528 kb on - strand, within BACOVA_01281at 68.532 kb on - strand, within BACOVA_01281at 68.558 kb on - strand, within BACOVA_01281at 68.568 kb on - strand, within BACOVA_01281at 68.571 kb on - strand, within BACOVA_01281at 68.594 kb on - strand, within BACOVA_01281at 68.719 kb on + strand, within BACOVA_01281

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 1 x (C) complex media
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65,296 - BACOVA_01277 0.69 -0.7
65,300 - BACOVA_01277 0.70 -0.2
65,308 + BACOVA_01277 0.70 -0.6
65,308 + BACOVA_01277 0.70 +0.9
65,390 + BACOVA_01277 0.77 -0.2
65,390 + BACOVA_01277 0.77 -0.1
65,397 - BACOVA_01277 0.78 +1.2
65,426 - BACOVA_01277 0.81 +0.2
65,426 - BACOVA_01277 0.81 +1.9
65,438 + BACOVA_01277 0.82 +0.6
65,447 + BACOVA_01277 0.82 +0.5
65,447 + BACOVA_01277 0.82 +0.3
65,447 + BACOVA_01277 0.82 -0.9
65,448 - BACOVA_01277 0.82 +0.5
65,501 + BACOVA_01277 0.87 +0.6
65,520 + BACOVA_01277 0.89 +0.1
65,521 - BACOVA_01277 0.89 -0.8
65,574 + +0.2
65,575 - +0.5
65,630 - -0.1
65,633 + -0.3
65,633 + -0.0
65,686 - +0.3
65,729 + +0.8
65,773 - BACOVA_01278 0.17 +0.1
65,784 - BACOVA_01278 0.19 +0.1
65,792 + BACOVA_01278 0.21 +0.5
65,801 + BACOVA_01278 0.23 -0.6
65,841 + BACOVA_01278 0.32 -0.3
65,899 - BACOVA_01278 0.46 +0.9
65,971 - BACOVA_01278 0.62 -0.1
66,009 + BACOVA_01278 0.71 -0.4
66,010 - BACOVA_01278 0.71 -0.1
66,049 + BACOVA_01278 0.80 -1.7
66,111 - -0.1
66,118 - -1.1
66,130 - -0.1
66,144 + -1.4
66,146 + +0.9
66,146 + +0.4
66,146 + +0.0
66,146 + +0.7
66,146 + +0.6
66,147 - +0.1
66,147 - -0.0
66,150 + -0.9
66,150 + -0.9
66,150 + +0.0
66,151 - +0.1
66,257 - +0.5
66,272 - -1.0
66,281 + -0.3
66,282 - +1.9
66,318 - -0.1
66,338 + -0.5
66,339 - +0.3
66,347 + +1.4
66,350 + -0.8
66,430 - +1.1
66,460 - BACOVA_01279 0.12 -0.4
66,528 + BACOVA_01279 0.17 +0.9
66,533 + BACOVA_01279 0.17 +1.2
66,579 - BACOVA_01279 0.20 +0.0
66,585 + BACOVA_01279 0.21 +0.1
66,585 + BACOVA_01279 0.21 -0.5
66,691 - BACOVA_01279 0.28 +0.9
66,699 + BACOVA_01279 0.29 -0.7
66,700 - BACOVA_01279 0.29 +0.6
66,700 - BACOVA_01279 0.29 -0.4
66,838 - BACOVA_01279 0.38 -2.1
66,838 - BACOVA_01279 0.38 -0.2
66,882 + BACOVA_01279 0.41 -0.6
66,886 - BACOVA_01279 0.42 -0.1
66,916 - BACOVA_01279 0.44 -0.3
66,955 - BACOVA_01279 0.46 +0.0
67,016 + BACOVA_01279 0.51 +1.9
67,023 - BACOVA_01279 0.51 +0.3
67,069 - BACOVA_01279 0.54 -1.7
67,191 - BACOVA_01279 0.63 -0.4
67,191 - BACOVA_01279 0.63 -0.0
67,204 + BACOVA_01279 0.64 -0.2
67,221 - BACOVA_01279 0.65 -0.2
67,250 + BACOVA_01279 0.67 +0.4
67,250 + BACOVA_01279 0.67 -1.1
67,251 - BACOVA_01279 0.67 -0.9
67,285 - BACOVA_01279 0.70 -2.4
67,285 - BACOVA_01279 0.70 +1.0
67,298 + BACOVA_01279 0.70 -0.3
67,301 + BACOVA_01279 0.71 +0.6
67,301 + BACOVA_01279 0.71 -0.5
67,301 + BACOVA_01279 0.71 -0.1
67,301 + BACOVA_01279 0.71 +0.2
67,302 - BACOVA_01279 0.71 -0.4
67,354 - BACOVA_01279 0.74 +0.9
67,354 - BACOVA_01279 0.74 +0.4
67,455 + BACOVA_01279 0.81 -0.7
67,461 + BACOVA_01279 0.82 +0.6
67,464 + BACOVA_01279 0.82 -1.7
67,492 - BACOVA_01279 0.84 +0.2
67,495 + BACOVA_01279 0.84 -1.4
67,557 + BACOVA_01279 0.89 +0.9
67,558 - BACOVA_01279 0.89 -0.4
67,566 - BACOVA_01279 0.89 +0.4
67,630 + -1.1
67,656 + +0.7
67,657 - -1.0
67,668 - +0.4
67,698 + +0.0
67,806 + BACOVA_01280 0.15 -0.1
67,815 + BACOVA_01280 0.17 -0.2
67,815 + BACOVA_01280 0.17 +0.7
67,816 - BACOVA_01280 0.17 +0.5
67,816 - BACOVA_01280 0.17 +0.5
67,816 - BACOVA_01280 0.17 -0.5
67,818 + BACOVA_01280 0.17 +0.1
67,818 + BACOVA_01280 0.17 -0.0
67,819 - BACOVA_01280 0.17 -0.6
67,822 - BACOVA_01280 0.18 +0.2
67,844 + BACOVA_01280 0.21 -1.8
67,844 + BACOVA_01280 0.21 +0.6
67,845 - BACOVA_01280 0.21 +1.2
67,965 + BACOVA_01280 0.39 -0.5
68,002 + BACOVA_01280 0.44 +0.5
68,002 + BACOVA_01280 0.44 -0.3
68,027 - BACOVA_01280 0.48 +0.2
68,027 - BACOVA_01280 0.48 -0.9
68,088 + BACOVA_01280 0.57 +0.0
68,089 - BACOVA_01280 0.57 -0.4
68,128 + BACOVA_01280 0.63 +0.9
68,140 + BACOVA_01280 0.65 +1.0
68,145 + BACOVA_01280 0.65 +0.3
68,145 + BACOVA_01280 0.65 +0.1
68,153 - BACOVA_01280 0.67 -0.0
68,241 + BACOVA_01280 0.80 -0.6
68,248 + BACOVA_01280 0.81 +0.4
68,251 + BACOVA_01280 0.81 -0.4
68,252 - BACOVA_01280 0.81 +0.7
68,269 + BACOVA_01280 0.84 -0.7
68,270 - BACOVA_01280 0.84 -0.7
68,285 - BACOVA_01280 0.86 -0.4
68,330 - -0.4
68,437 + +0.5
68,477 + -1.2
68,528 - BACOVA_01281 0.15 -1.1
68,532 - BACOVA_01281 0.15 +1.5
68,558 - BACOVA_01281 0.19 +0.6
68,568 - BACOVA_01281 0.21 +0.7
68,571 - BACOVA_01281 0.21 +0.1
68,594 - BACOVA_01281 0.24 +0.5
68,719 + BACOVA_01281 0.42 +0.2

Or see this region's nucleotide sequence