Experiment: R2A 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.102 kb on - strand, within BACOVA_00582 at 17.103 kb on + strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.231 kb on + strand, within BACOVA_00582 at 17.238 kb on + strand, within BACOVA_00582 at 17.239 kb on - strand, within BACOVA_00582 at 17.244 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.258 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.312 kb on + strand, within BACOVA_00582 at 17.352 kb on - strand, within BACOVA_00582 at 17.397 kb on + strand, within BACOVA_00582 at 17.398 kb on - strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.418 kb on - strand, within BACOVA_00582 at 17.436 kb on + strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.475 kb on - strand, within BACOVA_00582 at 17.506 kb on - strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 1 x (C) complex media remove 17,101 + BACOVA_00582 0.56 +0.3 17,101 + BACOVA_00582 0.56 +0.9 17,101 + BACOVA_00582 0.56 +0.4 17,101 + BACOVA_00582 0.56 +0.6 17,101 + BACOVA_00582 0.56 +0.2 17,102 - BACOVA_00582 0.56 +0.7 17,103 + BACOVA_00582 0.56 -0.9 17,104 - BACOVA_00582 0.57 -1.1 17,104 - BACOVA_00582 0.57 +0.2 17,231 + BACOVA_00582 0.62 -0.3 17,238 + BACOVA_00582 0.62 +0.1 17,239 - BACOVA_00582 0.63 -1.1 17,244 - BACOVA_00582 0.63 +0.3 17,251 - BACOVA_00582 0.63 -0.7 17,251 - BACOVA_00582 0.63 +2.9 17,258 - BACOVA_00582 0.63 -0.8 17,307 - BACOVA_00582 0.66 -1.7 17,307 - BACOVA_00582 0.66 -1.0 17,307 - BACOVA_00582 0.66 +0.9 17,312 + BACOVA_00582 0.66 +0.4 17,352 - BACOVA_00582 0.68 +0.1 17,397 + BACOVA_00582 0.69 +0.6 17,398 - BACOVA_00582 0.70 -0.2 17,413 + BACOVA_00582 0.70 +0.5 17,413 + BACOVA_00582 0.70 +0.7 17,418 - BACOVA_00582 0.70 +0.8 17,436 + BACOVA_00582 0.71 -1.1 17,437 - BACOVA_00582 0.71 +0.2 17,437 - BACOVA_00582 0.71 -1.3 17,475 - BACOVA_00582 0.73 -1.9 17,506 - BACOVA_00582 0.74 -1.1 17,525 + BACOVA_00582 0.75 +0.0 17,525 + BACOVA_00582 0.75 -0.0 17,525 + BACOVA_00582 0.75 +1.9 17,526 - BACOVA_00582 0.75 -1.1 17,526 - BACOVA_00582 0.75 -0.6 17,668 + BACOVA_00582 0.81 -0.1 17,669 - BACOVA_00582 0.82 +0.4 17,669 - BACOVA_00582 0.82 -0.0 17,669 - BACOVA_00582 0.82 +0.9 17,669 - BACOVA_00582 0.82 +0.6 17,719 + BACOVA_00582 0.84 -0.4 17,724 + BACOVA_00582 0.84 -1.2 17,783 - BACOVA_00582 0.87 -0.3 17,786 - BACOVA_00582 0.87 -0.7 17,844 - BACOVA_00582 0.89 -0.0 17,848 + BACOVA_00582 0.89 -0.2 17,849 - BACOVA_00582 0.90 -0.1 17,873 - -1.1 17,877 + +0.1 17,877 + -1.4 17,885 + -0.9 17,923 + -1.1 17,923 + -0.9 17,923 + +0.3 17,923 + -0.1 17,943 + -0.4 17,984 - -0.1 18,017 - +0.3 18,083 + +0.5 18,087 + +1.6 18,087 + +0.3 18,088 - -0.1 18,090 - -0.5 18,107 - -0.7 18,107 - -0.2 18,160 + BACOVA_00583 0.12 -1.0 18,179 + BACOVA_00583 0.16 +0.2 18,199 + BACOVA_00583 0.19 +0.6 18,219 + BACOVA_00583 0.23 -1.3 18,243 + BACOVA_00583 0.27 +0.2 18,244 - BACOVA_00583 0.27 +0.9 18,297 - BACOVA_00583 0.36 +0.5 18,297 - BACOVA_00583 0.36 +0.9 18,297 - BACOVA_00583 0.36 -0.1 18,397 - BACOVA_00583 0.54 +0.4 18,488 + BACOVA_00583 0.69 +0.7 18,517 + BACOVA_00583 0.75 -0.4 18,553 + BACOVA_00583 0.81 +0.3 18,554 - BACOVA_00583 0.81 +0.9 18,557 + BACOVA_00583 0.82 +0.2 18,575 + BACOVA_00583 0.85 +0.3 18,576 - BACOVA_00583 0.85 -1.9 18,588 - BACOVA_00583 0.87 -0.2 18,588 - BACOVA_00583 0.87 -0.4 18,622 + -0.5 18,623 - -0.8 18,626 + +0.9 18,667 - -0.2 18,667 - -1.4 18,667 - +0.0 18,705 + +0.1 18,705 + +2.9 18,734 + -0.1 18,743 - -2.0 18,870 + BACOVA_00584 0.21 -0.6 18,870 + BACOVA_00584 0.21 +0.5 18,870 + BACOVA_00584 0.21 -0.7 18,912 + BACOVA_00584 0.24 +0.2 18,928 - BACOVA_00584 0.26 +0.3 18,928 - BACOVA_00584 0.26 +0.5 18,996 + BACOVA_00584 0.32 -0.0 19,001 + BACOVA_00584 0.33 -0.2 19,002 - BACOVA_00584 0.33 -0.7 19,057 - BACOVA_00584 0.38 -1.0 19,071 - BACOVA_00584 0.39 +0.4 19,071 - BACOVA_00584 0.39 +0.3 19,113 + BACOVA_00584 0.43 -0.9 19,114 - BACOVA_00584 0.43 -1.4 19,134 + BACOVA_00584 0.45 -0.2 19,135 - BACOVA_00584 0.45 +0.6 19,148 + BACOVA_00584 0.46 +0.9 19,154 - BACOVA_00584 0.47 -1.1 19,167 - BACOVA_00584 0.48 +0.2 19,179 - BACOVA_00584 0.49 -1.0 19,252 - BACOVA_00584 0.56 -0.3 19,326 + BACOVA_00584 0.62 -1.3 19,505 - BACOVA_00584 0.79 -1.1 19,530 + BACOVA_00584 0.81 -1.4 19,542 + BACOVA_00584 0.82 -0.6 19,570 + BACOVA_00584 0.85 +0.3 19,572 + BACOVA_00584 0.85 +1.6 19,573 - BACOVA_00584 0.85 -1.7 19,573 - BACOVA_00584 0.85 -0.3 19,576 - BACOVA_00584 0.85 -0.9
Or see this region's nucleotide sequence