Experiment: R2A 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides BACOVA_00543 and BACOVA_00544 are separated by 191 nucleotides BACOVA_00544 and BACOVA_00545 overlap by 4 nucleotides
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
BACOVA_00544: BACOVA_00544 - hypothetical protein, at 42,272 to 42,379
_00544
BACOVA_00545: BACOVA_00545 - hypothetical protein, at 42,376 to 42,621
_00545
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.242 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.276 kb on + strand, within BACOVA_00540 at 40.300 kb on - strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.341 kb on + strand, within BACOVA_00540 at 40.373 kb on + strand, within BACOVA_00540 at 40.452 kb on + strand at 40.452 kb on + strand at 40.497 kb on + strand at 40.497 kb on + strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.500 kb on - strand at 40.501 kb on + strand at 40.502 kb on - strand at 40.554 kb on + strand at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand at 41.789 kb on + strand, within BACOVA_00543 at 41.982 kb on + strand, within BACOVA_00543 at 42.208 kb on + strand at 42.275 kb on + strand at 42.309 kb on + strand, within BACOVA_00544 at 42.427 kb on + strand, within BACOVA_00545 at 42.452 kb on + strand, within BACOVA_00545 at 42.468 kb on - strand, within BACOVA_00545 at 42.478 kb on + strand, within BACOVA_00545 at 42.513 kb on + strand, within BACOVA_00545 at 42.524 kb on + strand, within BACOVA_00545 at 42.525 kb on - strand, within BACOVA_00545
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 1 x (C) complex media remove 40,242 + BACOVA_00540 0.85 -1.0 40,251 + BACOVA_00540 0.86 +0.2 40,251 + BACOVA_00540 0.86 -0.1 40,276 + BACOVA_00540 0.87 -0.5 40,300 - BACOVA_00540 0.87 +0.2 40,320 + BACOVA_00540 0.88 -0.7 40,320 + BACOVA_00540 0.88 -1.1 40,321 - BACOVA_00540 0.88 -1.5 40,321 - BACOVA_00540 0.88 +0.5 40,321 - BACOVA_00540 0.88 +0.2 40,321 - BACOVA_00540 0.88 -0.5 40,341 + BACOVA_00540 0.89 -1.2 40,373 + BACOVA_00540 0.90 +1.0 40,452 + +1.4 40,452 + -0.6 40,497 + +0.1 40,497 + -0.6 40,498 - +0.3 40,498 - -0.5 40,498 - -0.2 40,500 - +0.2 40,501 + -0.1 40,502 - -0.2 40,554 + +0.4 40,576 + +1.4 40,576 + -0.4 40,617 + -0.1 40,621 + -0.2 40,621 + +1.8 40,621 + +1.1 40,622 - -0.2 40,624 + -0.4 40,624 + -2.7 40,634 + -0.7 40,661 - +1.2 40,661 - -0.7 40,661 - +0.3 40,664 + -0.9 40,678 - -0.5 40,777 + +0.8 40,778 - -0.8 40,960 + -1.7 40,964 + -0.4 40,970 + +1.5 41,158 + BACOVA_00542 0.22 -1.4 41,298 + BACOVA_00542 0.50 -1.8 41,387 + BACOVA_00542 0.68 +0.3 41,390 + BACOVA_00542 0.68 -0.2 41,514 + +0.8 41,514 + +0.2 41,566 + +1.0 41,789 + BACOVA_00543 0.43 +0.1 41,982 + BACOVA_00543 0.81 +1.5 42,208 + -0.8 42,275 + +1.1 42,309 + BACOVA_00544 0.34 +0.0 42,427 + BACOVA_00545 0.21 -0.1 42,452 + BACOVA_00545 0.31 +0.3 42,468 - BACOVA_00545 0.37 +0.8 42,478 + BACOVA_00545 0.41 -1.2 42,513 + BACOVA_00545 0.56 +0.0 42,524 + BACOVA_00545 0.60 -1.5 42,525 - BACOVA_00545 0.61 +0.1
Or see this region's nucleotide sequence