Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04966

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04965 and BACOVA_04966 are separated by 80 nucleotidesBACOVA_04966 and BACOVA_04967 are separated by 181 nucleotides BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712 _04965 BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877 _04966 BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457 _04967 Position (kb) 408 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 407.831 kb on + strand, within BACOVA_04965at 407.858 kb on + strand, within BACOVA_04965at 407.903 kb on - strand, within BACOVA_04965at 407.905 kb on + strand, within BACOVA_04965at 407.929 kb on + strand, within BACOVA_04965at 407.929 kb on + strand, within BACOVA_04965at 408.038 kb on - strand, within BACOVA_04965at 408.042 kb on - strand, within BACOVA_04965at 408.042 kb on - strand, within BACOVA_04965at 408.062 kb on + strand, within BACOVA_04965at 408.064 kb on + strand, within BACOVA_04965at 408.125 kb on - strand, within BACOVA_04965at 408.125 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.153 kb on - strand, within BACOVA_04965at 408.219 kb on - strand, within BACOVA_04965at 408.240 kb on + strand, within BACOVA_04965at 408.241 kb on - strand, within BACOVA_04965at 408.302 kb on + strand, within BACOVA_04965at 408.326 kb on + strand, within BACOVA_04965at 408.327 kb on - strand, within BACOVA_04965at 408.328 kb on + strand, within BACOVA_04965at 408.328 kb on + strand, within BACOVA_04965at 408.329 kb on - strand, within BACOVA_04965at 408.397 kb on - strand, within BACOVA_04965at 408.478 kb on + strand, within BACOVA_04965at 408.483 kb on + strand, within BACOVA_04965at 408.520 kb on - strand, within BACOVA_04965at 408.575 kb on - strandat 408.592 kb on + strandat 408.592 kb on + strandat 408.596 kb on + strandat 408.596 kb on + strandat 408.597 kb on - strandat 408.597 kb on - strandat 408.599 kb on - strandat 408.599 kb on - strandat 408.603 kb on - strandat 408.603 kb on - strandat 408.637 kb on + strandat 408.637 kb on + strandat 408.637 kb on + strandat 408.638 kb on - strandat 408.638 kb on - strandat 408.644 kb on + strandat 408.737 kb on - strandat 408.737 kb on - strandat 408.737 kb on - strandat 408.743 kb on - strandat 408.747 kb on + strandat 408.747 kb on + strandat 408.805 kb on + strandat 408.806 kb on - strandat 408.807 kb on + strandat 408.807 kb on + strandat 408.809 kb on + strandat 408.809 kb on + strandat 408.810 kb on - strandat 408.839 kb on + strandat 408.954 kb on + strandat 408.958 kb on + strandat 409.028 kb on + strand, within BACOVA_04966at 409.047 kb on + strand, within BACOVA_04966at 409.066 kb on + strand, within BACOVA_04966at 409.067 kb on - strand, within BACOVA_04966at 409.067 kb on - strand, within BACOVA_04966at 409.069 kb on - strand, within BACOVA_04966at 409.126 kb on - strand, within BACOVA_04966at 409.126 kb on - strand, within BACOVA_04966at 409.154 kb on + strand, within BACOVA_04966at 409.169 kb on + strand, within BACOVA_04966at 409.170 kb on - strand, within BACOVA_04966at 409.215 kb on + strand, within BACOVA_04966at 409.215 kb on + strand, within BACOVA_04966at 409.221 kb on + strand, within BACOVA_04966at 409.247 kb on - strand, within BACOVA_04966at 409.257 kb on + strand, within BACOVA_04966at 409.258 kb on - strand, within BACOVA_04966at 409.262 kb on + strand, within BACOVA_04966at 409.291 kb on - strand, within BACOVA_04966at 409.295 kb on - strand, within BACOVA_04966at 409.309 kb on - strand, within BACOVA_04966at 409.370 kb on - strand, within BACOVA_04966at 409.470 kb on + strand, within BACOVA_04966at 409.490 kb on - strand, within BACOVA_04966at 409.491 kb on + strand, within BACOVA_04966at 409.500 kb on + strand, within BACOVA_04966at 409.501 kb on - strand, within BACOVA_04966at 409.506 kb on - strand, within BACOVA_04966at 409.530 kb on - strand, within BACOVA_04966at 409.538 kb on + strand, within BACOVA_04966at 409.578 kb on + strand, within BACOVA_04966at 409.588 kb on - strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.662 kb on + strand, within BACOVA_04966at 409.662 kb on + strand, within BACOVA_04966at 409.668 kb on + strand, within BACOVA_04966at 409.702 kb on + strand, within BACOVA_04966at 409.703 kb on - strand, within BACOVA_04966at 409.711 kb on - strand, within BACOVA_04966at 409.711 kb on - strand, within BACOVA_04966at 409.723 kb on + strand, within BACOVA_04966at 409.755 kb on + strand, within BACOVA_04966at 409.798 kb on + strand, within BACOVA_04966at 409.810 kb on + strand, within BACOVA_04966at 409.876 kb on - strand, within BACOVA_04966at 409.876 kb on - strand, within BACOVA_04966at 409.929 kb on + strand, within BACOVA_04966at 409.935 kb on + strand, within BACOVA_04966at 409.935 kb on + strand, within BACOVA_04966at 409.944 kb on + strand, within BACOVA_04966at 409.945 kb on - strand, within BACOVA_04966at 409.980 kb on + strand, within BACOVA_04966at 410.007 kb on + strand, within BACOVA_04966at 410.098 kb on + strand, within BACOVA_04966at 410.099 kb on - strand, within BACOVA_04966at 410.099 kb on - strand, within BACOVA_04966at 410.114 kb on + strand, within BACOVA_04966at 410.169 kb on - strand, within BACOVA_04966at 410.240 kb on - strand, within BACOVA_04966at 410.343 kb on + strand, within BACOVA_04966at 410.355 kb on + strand, within BACOVA_04966at 410.355 kb on + strand, within BACOVA_04966at 410.356 kb on - strand, within BACOVA_04966at 410.356 kb on - strand, within BACOVA_04966at 410.356 kb on - strand, within BACOVA_04966at 410.419 kb on - strand, within BACOVA_04966at 410.442 kb on + strand, within BACOVA_04966at 410.446 kb on + strand, within BACOVA_04966at 410.447 kb on - strand, within BACOVA_04966at 410.447 kb on - strand, within BACOVA_04966at 410.447 kb on - strand, within BACOVA_04966at 410.447 kb on - strand, within BACOVA_04966at 410.452 kb on - strand, within BACOVA_04966at 410.458 kb on - strand, within BACOVA_04966at 410.476 kb on + strand, within BACOVA_04966at 410.483 kb on + strand, within BACOVA_04966at 410.491 kb on + strand, within BACOVA_04966at 410.545 kb on + strand, within BACOVA_04966at 410.546 kb on - strand, within BACOVA_04966at 410.578 kb on - strand, within BACOVA_04966at 410.622 kb on + strand, within BACOVA_04966at 410.628 kb on + strand, within BACOVA_04966at 410.629 kb on - strand, within BACOVA_04966at 410.629 kb on - strand, within BACOVA_04966at 410.638 kb on + strand, within BACOVA_04966at 410.638 kb on + strand, within BACOVA_04966at 410.651 kb on - strand, within BACOVA_04966at 410.654 kb on - strand, within BACOVA_04966at 410.687 kb on + strandat 410.687 kb on + strandat 410.687 kb on + strandat 410.688 kb on - strandat 410.691 kb on - strandat 410.715 kb on + strandat 410.715 kb on + strandat 410.719 kb on + strandat 410.719 kb on + strandat 410.722 kb on - strandat 410.722 kb on - strandat 410.724 kb on - strandat 410.783 kb on - strandat 410.787 kb on + strandat 410.787 kb on + strandat 410.787 kb on + strandat 410.818 kb on - strandat 410.830 kb on - strandat 410.835 kb on - strandat 410.835 kb on - strandat 410.842 kb on + strandat 410.842 kb on + strandat 410.843 kb on - strandat 410.847 kb on - strandat 410.847 kb on - strandat 410.903 kb on + strandat 410.904 kb on - strandat 410.967 kb on - strandat 410.967 kb on - strandat 410.986 kb on + strandat 410.986 kb on + strandat 410.987 kb on - strandat 410.988 kb on + strandat 410.988 kb on + strandat 410.988 kb on + strandat 410.989 kb on - strandat 410.997 kb on + strandat 410.998 kb on - strandat 411.028 kb on - strandat 411.035 kb on + strandat 411.035 kb on + strandat 411.052 kb on + strandat 411.054 kb on + strandat 411.054 kb on + strandat 411.054 kb on + strandat 411.168 kb on + strandat 411.169 kb on - strandat 411.190 kb on + strandat 411.191 kb on - strandat 411.191 kb on - strandat 411.223 kb on - strandat 411.233 kb on - strandat 411.241 kb on + strandat 411.247 kb on - strandat 411.247 kb on - strandat 411.301 kb on - strandat 411.306 kb on + strandat 411.377 kb on - strandat 411.380 kb on - strandat 411.380 kb on - strandat 411.382 kb on - strandat 411.426 kb on - strand, within BACOVA_04967at 411.440 kb on + strand, within BACOVA_04967at 411.441 kb on - strand, within BACOVA_04967at 411.464 kb on + strand, within BACOVA_04967at 411.465 kb on - strand, within BACOVA_04967at 411.466 kb on + strand, within BACOVA_04967at 411.466 kb on + strand, within BACOVA_04967at 411.472 kb on + strand, within BACOVA_04967at 411.472 kb on + strand, within BACOVA_04967at 411.475 kb on + strand, within BACOVA_04967at 411.491 kb on + strand, within BACOVA_04967at 411.528 kb on + strand, within BACOVA_04967at 411.553 kb on + strand, within BACOVA_04967at 411.554 kb on - strand, within BACOVA_04967at 411.554 kb on - strand, within BACOVA_04967at 411.554 kb on - strand, within BACOVA_04967at 411.598 kb on + strand, within BACOVA_04967at 411.617 kb on - strand, within BACOVA_04967at 411.625 kb on + strand, within BACOVA_04967at 411.626 kb on - strand, within BACOVA_04967at 411.630 kb on - strand, within BACOVA_04967at 411.632 kb on + strand, within BACOVA_04967at 411.632 kb on + strand, within BACOVA_04967at 411.636 kb on + strand, within BACOVA_04967at 411.636 kb on + strand, within BACOVA_04967at 411.636 kb on + strand, within BACOVA_04967at 411.637 kb on - strand, within BACOVA_04967at 411.637 kb on - strand, within BACOVA_04967at 411.712 kb on - strand, within BACOVA_04967at 411.767 kb on - strand, within BACOVA_04967at 411.767 kb on - strand, within BACOVA_04967at 411.793 kb on + strand, within BACOVA_04967at 411.846 kb on - strand, within BACOVA_04967at 411.849 kb on + strand, within BACOVA_04967

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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407,831 + BACOVA_04965 0.49 -0.3
407,858 + BACOVA_04965 0.50 +0.2
407,903 - BACOVA_04965 0.53 -0.6
407,905 + BACOVA_04965 0.53 -0.3
407,929 + BACOVA_04965 0.54 -0.6
407,929 + BACOVA_04965 0.54 -1.2
408,038 - BACOVA_04965 0.61 -0.4
408,042 - BACOVA_04965 0.61 +0.2
408,042 - BACOVA_04965 0.61 +1.2
408,062 + BACOVA_04965 0.62 +0.4
408,064 + BACOVA_04965 0.62 +1.1
408,125 - BACOVA_04965 0.66 -1.4
408,125 - BACOVA_04965 0.66 +0.8
408,134 - BACOVA_04965 0.66 -1.0
408,134 - BACOVA_04965 0.66 +0.4
408,134 - BACOVA_04965 0.66 -1.2
408,153 - BACOVA_04965 0.67 +0.2
408,219 - BACOVA_04965 0.71 -0.8
408,240 + BACOVA_04965 0.73 +0.2
408,241 - BACOVA_04965 0.73 -0.2
408,302 + BACOVA_04965 0.76 -0.8
408,326 + BACOVA_04965 0.78 +1.4
408,327 - BACOVA_04965 0.78 +0.0
408,328 + BACOVA_04965 0.78 -0.5
408,328 + BACOVA_04965 0.78 -0.7
408,329 - BACOVA_04965 0.78 -0.4
408,397 - BACOVA_04965 0.82 +0.4
408,478 + BACOVA_04965 0.86 +0.0
408,483 + BACOVA_04965 0.87 +0.0
408,520 - BACOVA_04965 0.89 -0.5
408,575 - -0.1
408,592 + +0.5
408,592 + -0.5
408,596 + +0.2
408,596 + -0.2
408,597 - -1.2
408,597 - -0.8
408,599 - +1.4
408,599 - +0.4
408,603 - -1.0
408,603 - +0.0
408,637 + -0.2
408,637 + -0.0
408,637 + +1.6
408,638 - -0.3
408,638 - -0.3
408,644 + -0.8
408,737 - +0.3
408,737 - -0.5
408,737 - -2.9
408,743 - +0.4
408,747 + -0.5
408,747 + -0.4
408,805 + -0.4
408,806 - +0.6
408,807 + -1.0
408,807 + +0.8
408,809 + -0.1
408,809 + +0.4
408,810 - +0.0
408,839 + +0.2
408,954 + -0.3
408,958 + -0.3
409,028 + BACOVA_04966 0.11 +0.3
409,047 + BACOVA_04966 0.12 -0.1
409,066 + BACOVA_04966 0.13 +0.4
409,067 - BACOVA_04966 0.13 +2.8
409,067 - BACOVA_04966 0.13 -0.5
409,069 - BACOVA_04966 0.13 -0.9
409,126 - BACOVA_04966 0.16 -0.7
409,126 - BACOVA_04966 0.16 -0.2
409,154 + BACOVA_04966 0.17 -1.0
409,169 + BACOVA_04966 0.18 -0.6
409,170 - BACOVA_04966 0.18 -0.5
409,215 + BACOVA_04966 0.20 -1.8
409,215 + BACOVA_04966 0.20 +0.8
409,221 + BACOVA_04966 0.21 -0.2
409,247 - BACOVA_04966 0.22 -0.5
409,257 + BACOVA_04966 0.22 -1.5
409,258 - BACOVA_04966 0.22 -0.4
409,262 + BACOVA_04966 0.22 +0.4
409,291 - BACOVA_04966 0.24 +0.4
409,295 - BACOVA_04966 0.24 +0.1
409,309 - BACOVA_04966 0.25 +0.8
409,370 - BACOVA_04966 0.28 +0.2
409,470 + BACOVA_04966 0.32 +0.3
409,490 - BACOVA_04966 0.33 -1.2
409,491 + BACOVA_04966 0.33 +0.1
409,500 + BACOVA_04966 0.34 -0.3
409,501 - BACOVA_04966 0.34 +0.6
409,506 - BACOVA_04966 0.34 -1.1
409,530 - BACOVA_04966 0.35 +0.3
409,538 + BACOVA_04966 0.36 -0.8
409,578 + BACOVA_04966 0.38 +1.4
409,588 - BACOVA_04966 0.38 -1.5
409,597 + BACOVA_04966 0.39 -0.1
409,597 + BACOVA_04966 0.39 +0.1
409,597 + BACOVA_04966 0.39 -0.2
409,662 + BACOVA_04966 0.42 -0.8
409,662 + BACOVA_04966 0.42 +0.0
409,668 + BACOVA_04966 0.42 -1.0
409,702 + BACOVA_04966 0.44 +0.9
409,703 - BACOVA_04966 0.44 -0.2
409,711 - BACOVA_04966 0.44 +0.1
409,711 - BACOVA_04966 0.44 +0.2
409,723 + BACOVA_04966 0.45 +0.8
409,755 + BACOVA_04966 0.46 +1.0
409,798 + BACOVA_04966 0.48 +0.5
409,810 + BACOVA_04966 0.49 -0.3
409,876 - BACOVA_04966 0.52 +0.1
409,876 - BACOVA_04966 0.52 +1.1
409,929 + BACOVA_04966 0.54 +0.5
409,935 + BACOVA_04966 0.55 +1.1
409,935 + BACOVA_04966 0.55 +0.5
409,944 + BACOVA_04966 0.55 -0.5
409,945 - BACOVA_04966 0.55 +0.1
409,980 + BACOVA_04966 0.57 +0.5
410,007 + BACOVA_04966 0.58 +0.8
410,098 + BACOVA_04966 0.63 -0.2
410,099 - BACOVA_04966 0.63 -0.4
410,099 - BACOVA_04966 0.63 +0.3
410,114 + BACOVA_04966 0.63 +0.3
410,169 - BACOVA_04966 0.66 +0.2
410,240 - BACOVA_04966 0.69 +1.8
410,343 + BACOVA_04966 0.74 -0.8
410,355 + BACOVA_04966 0.75 +0.3
410,355 + BACOVA_04966 0.75 +0.2
410,356 - BACOVA_04966 0.75 +0.3
410,356 - BACOVA_04966 0.75 -0.0
410,356 - BACOVA_04966 0.75 -1.8
410,419 - BACOVA_04966 0.78 -0.2
410,442 + BACOVA_04966 0.79 -0.9
410,446 + BACOVA_04966 0.79 +0.8
410,447 - BACOVA_04966 0.79 -0.2
410,447 - BACOVA_04966 0.79 -0.2
410,447 - BACOVA_04966 0.79 -0.5
410,447 - BACOVA_04966 0.79 +0.5
410,452 - BACOVA_04966 0.80 -0.5
410,458 - BACOVA_04966 0.80 -0.2
410,476 + BACOVA_04966 0.81 +0.2
410,483 + BACOVA_04966 0.81 +0.5
410,491 + BACOVA_04966 0.81 +0.6
410,545 + BACOVA_04966 0.84 -0.9
410,546 - BACOVA_04966 0.84 +0.4
410,578 - BACOVA_04966 0.86 -1.0
410,622 + BACOVA_04966 0.88 -0.1
410,628 + BACOVA_04966 0.88 -0.0
410,629 - BACOVA_04966 0.88 -0.9
410,629 - BACOVA_04966 0.88 +0.7
410,638 + BACOVA_04966 0.88 -0.9
410,638 + BACOVA_04966 0.88 +0.3
410,651 - BACOVA_04966 0.89 +0.7
410,654 - BACOVA_04966 0.89 +1.8
410,687 + +0.3
410,687 + -0.0
410,687 + -0.8
410,688 - -0.8
410,691 - -0.5
410,715 + +0.6
410,715 + +0.2
410,719 + +1.8
410,719 + -0.5
410,722 - +1.2
410,722 - -0.6
410,724 - +0.4
410,783 - +0.4
410,787 + -1.5
410,787 + -0.4
410,787 + +0.2
410,818 - -0.1
410,830 - -0.3
410,835 - +0.8
410,835 - -0.0
410,842 + -1.3
410,842 + +0.0
410,843 - -2.5
410,847 - -0.0
410,847 - -1.4
410,903 + +1.0
410,904 - -0.6
410,967 - +0.4
410,967 - +0.1
410,986 + -0.3
410,986 + +1.2
410,987 - -0.5
410,988 + +0.4
410,988 + +1.5
410,988 + -1.3
410,989 - +0.5
410,997 + -1.9
410,998 - -0.4
411,028 - +0.2
411,035 + +0.8
411,035 + +0.6
411,052 + -0.9
411,054 + -0.9
411,054 + -0.6
411,054 + -0.2
411,168 + -0.8
411,169 - +0.0
411,190 + +0.2
411,191 - -0.0
411,191 - -0.4
411,223 - -0.2
411,233 - -0.4
411,241 + +0.2
411,247 - -0.9
411,247 - +0.6
411,301 - -1.1
411,306 + +0.2
411,377 - -0.9
411,380 - -1.4
411,380 - -0.2
411,382 - -1.2
411,426 - BACOVA_04967 0.11 +0.9
411,440 + BACOVA_04967 0.11 +0.4
411,441 - BACOVA_04967 0.11 +0.6
411,464 + BACOVA_04967 0.12 +0.4
411,465 - BACOVA_04967 0.12 +0.0
411,466 + BACOVA_04967 0.12 -0.8
411,466 + BACOVA_04967 0.12 -1.1
411,472 + BACOVA_04967 0.12 -0.8
411,472 + BACOVA_04967 0.12 -2.1
411,475 + BACOVA_04967 0.12 -0.5
411,491 + BACOVA_04967 0.13 -1.2
411,528 + BACOVA_04967 0.14 +1.0
411,553 + BACOVA_04967 0.15 +0.6
411,554 - BACOVA_04967 0.15 +0.8
411,554 - BACOVA_04967 0.15 +0.6
411,554 - BACOVA_04967 0.15 +0.2
411,598 + BACOVA_04967 0.16 -0.7
411,617 - BACOVA_04967 0.16 +0.2
411,625 + BACOVA_04967 0.17 -0.7
411,626 - BACOVA_04967 0.17 -0.4
411,630 - BACOVA_04967 0.17 +0.0
411,632 + BACOVA_04967 0.17 +0.6
411,632 + BACOVA_04967 0.17 +0.5
411,636 + BACOVA_04967 0.17 -0.9
411,636 + BACOVA_04967 0.17 +0.5
411,636 + BACOVA_04967 0.17 -0.3
411,637 - BACOVA_04967 0.17 -1.1
411,637 - BACOVA_04967 0.17 -0.9
411,712 - BACOVA_04967 0.19 +0.2
411,767 - BACOVA_04967 0.21 -0.3
411,767 - BACOVA_04967 0.21 +0.8
411,793 + BACOVA_04967 0.22 +0.8
411,846 - BACOVA_04967 0.23 -0.4
411,849 + BACOVA_04967 0.23 -0.2

Or see this region's nucleotide sequence