Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04297

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04296 and BACOVA_04297 are separated by 130 nucleotidesBACOVA_04297 and BACOVA_04298 are separated by 148 nucleotides BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228 _04296 BACOVA_04297: BACOVA_04297 - alanine dehydrogenase, at 189,359 to 190,465 _04297 BACOVA_04298: BACOVA_04298 - oxidoreductase, 2-nitropropane dioxygenase family protein, at 190,614 to 191,552 _04298 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 188.408 kb on + strandat 188.409 kb on - strandat 188.410 kb on + strandat 188.410 kb on + strandat 188.411 kb on - strandat 188.500 kb on + strandat 188.501 kb on - strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.503 kb on - strandat 188.503 kb on - strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.505 kb on - strandat 188.505 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.543 kb on + strandat 188.543 kb on + strandat 188.556 kb on + strandat 188.556 kb on + strandat 188.559 kb on + strandat 188.560 kb on - strandat 188.560 kb on - strandat 188.582 kb on + strandat 188.595 kb on - strandat 188.598 kb on + strandat 188.601 kb on + strandat 188.677 kb on + strand, within BACOVA_04296at 188.677 kb on + strand, within BACOVA_04296at 188.683 kb on - strand, within BACOVA_04296at 188.685 kb on + strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.716 kb on + strand, within BACOVA_04296at 188.747 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.815 kb on - strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.859 kb on - strand, within BACOVA_04296at 188.902 kb on + strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.951 kb on + strand, within BACOVA_04296at 188.979 kb on - strand, within BACOVA_04296at 188.991 kb on + strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 189.098 kb on + strand, within BACOVA_04296at 189.108 kb on + strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.119 kb on + strand, within BACOVA_04296at 189.120 kb on - strand, within BACOVA_04296at 189.129 kb on + strand, within BACOVA_04296at 189.155 kb on - strand, within BACOVA_04296at 189.165 kb on - strandat 189.165 kb on - strandat 189.307 kb on + strandat 189.308 kb on - strandat 189.337 kb on + strandat 189.372 kb on + strandat 189.405 kb on + strandat 189.405 kb on + strandat 189.438 kb on + strandat 189.456 kb on + strandat 189.470 kb on - strand, within BACOVA_04297at 189.480 kb on + strand, within BACOVA_04297at 189.481 kb on - strand, within BACOVA_04297at 189.526 kb on + strand, within BACOVA_04297at 189.526 kb on + strand, within BACOVA_04297at 189.527 kb on - strand, within BACOVA_04297at 189.540 kb on + strand, within BACOVA_04297at 189.540 kb on + strand, within BACOVA_04297at 189.540 kb on + strand, within BACOVA_04297at 189.541 kb on - strand, within BACOVA_04297at 189.541 kb on - strand, within BACOVA_04297at 189.547 kb on + strand, within BACOVA_04297at 189.551 kb on + strand, within BACOVA_04297at 189.551 kb on + strand, within BACOVA_04297at 189.627 kb on + strand, within BACOVA_04297at 189.628 kb on - strand, within BACOVA_04297at 189.630 kb on + strand, within BACOVA_04297at 189.697 kb on - strand, within BACOVA_04297at 189.717 kb on + strand, within BACOVA_04297at 189.775 kb on + strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.846 kb on + strand, within BACOVA_04297at 189.847 kb on - strand, within BACOVA_04297at 189.847 kb on - strand, within BACOVA_04297at 189.871 kb on - strand, within BACOVA_04297at 189.894 kb on + strand, within BACOVA_04297at 189.895 kb on - strand, within BACOVA_04297at 190.002 kb on + strand, within BACOVA_04297at 190.002 kb on + strand, within BACOVA_04297at 190.003 kb on - strand, within BACOVA_04297at 190.013 kb on + strand, within BACOVA_04297at 190.013 kb on + strand, within BACOVA_04297at 190.014 kb on - strand, within BACOVA_04297at 190.059 kb on + strand, within BACOVA_04297at 190.090 kb on + strand, within BACOVA_04297at 190.147 kb on - strand, within BACOVA_04297at 190.149 kb on + strand, within BACOVA_04297at 190.150 kb on - strand, within BACOVA_04297at 190.150 kb on - strand, within BACOVA_04297at 190.152 kb on + strand, within BACOVA_04297at 190.153 kb on - strand, within BACOVA_04297at 190.158 kb on + strand, within BACOVA_04297at 190.158 kb on + strand, within BACOVA_04297at 190.220 kb on + strand, within BACOVA_04297at 190.220 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.244 kb on + strand, within BACOVA_04297at 190.252 kb on - strand, within BACOVA_04297at 190.256 kb on - strand, within BACOVA_04297at 190.278 kb on - strand, within BACOVA_04297at 190.307 kb on - strand, within BACOVA_04297at 190.317 kb on - strand, within BACOVA_04297at 190.375 kb on - strandat 190.414 kb on + strandat 190.415 kb on - strandat 190.454 kb on - strandat 190.463 kb on + strandat 190.463 kb on + strandat 190.463 kb on + strandat 190.464 kb on - strandat 190.464 kb on - strandat 190.483 kb on - strandat 190.483 kb on - strandat 190.524 kb on + strandat 190.524 kb on + strandat 190.543 kb on + strandat 190.544 kb on - strandat 190.589 kb on + strandat 190.592 kb on + strandat 190.593 kb on - strandat 190.607 kb on + strandat 190.615 kb on + strandat 190.672 kb on - strandat 190.785 kb on + strand, within BACOVA_04298at 190.786 kb on - strand, within BACOVA_04298at 190.895 kb on + strand, within BACOVA_04298at 190.898 kb on + strand, within BACOVA_04298at 190.925 kb on - strand, within BACOVA_04298at 190.981 kb on - strand, within BACOVA_04298at 191.009 kb on + strand, within BACOVA_04298at 191.020 kb on - strand, within BACOVA_04298at 191.052 kb on + strand, within BACOVA_04298at 191.310 kb on - strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.381 kb on + strand, within BACOVA_04298at 191.388 kb on - strand, within BACOVA_04298at 191.404 kb on - strand, within BACOVA_04298at 191.434 kb on - strand, within BACOVA_04298

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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188,408 + -0.3
188,409 - +0.0
188,410 + +0.6
188,410 + +0.9
188,411 - -0.1
188,500 + +0.9
188,501 - +0.2
188,502 + -0.7
188,502 + +0.4
188,502 + +0.3
188,503 - -0.0
188,503 - -2.6
188,504 + -1.8
188,504 + +0.4
188,504 + +0.9
188,505 - -0.9
188,505 - -0.9
188,507 - +0.2
188,507 - +0.7
188,507 - -0.3
188,507 - -0.4
188,543 + -0.5
188,543 + -0.2
188,556 + -2.1
188,556 + -0.3
188,559 + +0.3
188,560 - -0.2
188,560 - -1.8
188,582 + +0.5
188,595 - -0.4
188,598 + -0.3
188,601 + -1.7
188,677 + BACOVA_04296 0.19 +1.3
188,677 + BACOVA_04296 0.19 -0.7
188,683 - BACOVA_04296 0.20 -0.7
188,685 + BACOVA_04296 0.20 +0.6
188,686 - BACOVA_04296 0.21 +1.2
188,686 - BACOVA_04296 0.21 -0.3
188,716 + BACOVA_04296 0.25 -0.6
188,747 + BACOVA_04296 0.30 +0.0
188,756 + BACOVA_04296 0.31 -0.7
188,756 + BACOVA_04296 0.31 -0.1
188,756 + BACOVA_04296 0.31 -1.3
188,815 - BACOVA_04296 0.39 +0.7
188,858 + BACOVA_04296 0.46 -1.0
188,858 + BACOVA_04296 0.46 +0.1
188,859 - BACOVA_04296 0.46 +0.0
188,902 + BACOVA_04296 0.52 -0.7
188,921 - BACOVA_04296 0.55 +0.5
188,921 - BACOVA_04296 0.55 +0.7
188,921 - BACOVA_04296 0.55 +0.5
188,951 + BACOVA_04296 0.59 -0.3
188,979 - BACOVA_04296 0.63 -0.7
188,991 + BACOVA_04296 0.65 +0.0
188,992 - BACOVA_04296 0.65 -0.3
188,992 - BACOVA_04296 0.65 +0.1
189,098 + BACOVA_04296 0.81 +0.2
189,108 + BACOVA_04296 0.82 +0.3
189,109 - BACOVA_04296 0.82 +0.7
189,109 - BACOVA_04296 0.82 +0.1
189,109 - BACOVA_04296 0.82 +0.4
189,119 + BACOVA_04296 0.84 +0.4
189,120 - BACOVA_04296 0.84 +0.6
189,129 + BACOVA_04296 0.85 -1.1
189,155 - BACOVA_04296 0.89 +0.0
189,165 - -1.3
189,165 - +0.3
189,307 + +0.3
189,308 - -0.3
189,337 + +0.1
189,372 + -0.7
189,405 + +0.1
189,405 + -0.3
189,438 + -2.0
189,456 + -0.5
189,470 - BACOVA_04297 0.10 -0.1
189,480 + BACOVA_04297 0.11 +1.7
189,481 - BACOVA_04297 0.11 -0.6
189,526 + BACOVA_04297 0.15 -0.2
189,526 + BACOVA_04297 0.15 +0.4
189,527 - BACOVA_04297 0.15 +0.2
189,540 + BACOVA_04297 0.16 +0.5
189,540 + BACOVA_04297 0.16 +0.9
189,540 + BACOVA_04297 0.16 +0.5
189,541 - BACOVA_04297 0.16 +0.1
189,541 - BACOVA_04297 0.16 -0.2
189,547 + BACOVA_04297 0.17 +0.0
189,551 + BACOVA_04297 0.17 +0.0
189,551 + BACOVA_04297 0.17 -0.3
189,627 + BACOVA_04297 0.24 -0.4
189,628 - BACOVA_04297 0.24 +0.6
189,630 + BACOVA_04297 0.24 -0.6
189,697 - BACOVA_04297 0.31 +0.5
189,717 + BACOVA_04297 0.32 +0.5
189,775 + BACOVA_04297 0.38 -0.1
189,776 - BACOVA_04297 0.38 -0.7
189,776 - BACOVA_04297 0.38 +1.9
189,776 - BACOVA_04297 0.38 -1.0
189,776 - BACOVA_04297 0.38 +0.3
189,776 - BACOVA_04297 0.38 +1.9
189,776 - BACOVA_04297 0.38 -0.1
189,776 - BACOVA_04297 0.38 +0.2
189,846 + BACOVA_04297 0.44 +0.4
189,847 - BACOVA_04297 0.44 +0.5
189,847 - BACOVA_04297 0.44 -0.5
189,871 - BACOVA_04297 0.46 -0.8
189,894 + BACOVA_04297 0.48 -0.4
189,895 - BACOVA_04297 0.48 -1.4
190,002 + BACOVA_04297 0.58 -0.1
190,002 + BACOVA_04297 0.58 +0.6
190,003 - BACOVA_04297 0.58 +0.2
190,013 + BACOVA_04297 0.59 +0.6
190,013 + BACOVA_04297 0.59 +0.1
190,014 - BACOVA_04297 0.59 -0.3
190,059 + BACOVA_04297 0.63 -0.3
190,090 + BACOVA_04297 0.66 -0.1
190,147 - BACOVA_04297 0.71 -0.8
190,149 + BACOVA_04297 0.71 +0.3
190,150 - BACOVA_04297 0.71 +0.1
190,150 - BACOVA_04297 0.71 +0.1
190,152 + BACOVA_04297 0.72 +0.7
190,153 - BACOVA_04297 0.72 -0.0
190,158 + BACOVA_04297 0.72 +0.1
190,158 + BACOVA_04297 0.72 -0.3
190,220 + BACOVA_04297 0.78 +0.0
190,220 + BACOVA_04297 0.78 -0.3
190,227 + BACOVA_04297 0.78 +0.6
190,227 + BACOVA_04297 0.78 +0.4
190,227 + BACOVA_04297 0.78 -0.3
190,227 + BACOVA_04297 0.78 +0.4
190,244 + BACOVA_04297 0.80 -1.0
190,252 - BACOVA_04297 0.81 -0.4
190,256 - BACOVA_04297 0.81 +0.9
190,278 - BACOVA_04297 0.83 +0.9
190,307 - BACOVA_04297 0.86 +0.4
190,317 - BACOVA_04297 0.87 +0.1
190,375 - -0.0
190,414 + -0.4
190,415 - -1.2
190,454 - +0.7
190,463 + -0.2
190,463 + +2.2
190,463 + +0.7
190,464 - +1.5
190,464 - +0.5
190,483 - +0.1
190,483 - -0.4
190,524 + +0.0
190,524 + +1.7
190,543 + +0.1
190,544 - -1.1
190,589 + -1.9
190,592 + -0.0
190,593 - -0.8
190,607 + +1.1
190,615 + +0.9
190,672 - -0.3
190,785 + BACOVA_04298 0.18 +0.0
190,786 - BACOVA_04298 0.18 -0.7
190,895 + BACOVA_04298 0.30 -0.5
190,898 + BACOVA_04298 0.30 -0.1
190,925 - BACOVA_04298 0.33 +1.3
190,981 - BACOVA_04298 0.39 +0.3
191,009 + BACOVA_04298 0.42 -0.7
191,020 - BACOVA_04298 0.43 +0.9
191,052 + BACOVA_04298 0.47 +0.1
191,310 - BACOVA_04298 0.74 +0.5
191,335 + BACOVA_04298 0.77 -0.0
191,335 + BACOVA_04298 0.77 -0.3
191,381 + BACOVA_04298 0.82 +0.1
191,388 - BACOVA_04298 0.82 +0.3
191,404 - BACOVA_04298 0.84 -0.7
191,434 - BACOVA_04298 0.87 -0.7

Or see this region's nucleotide sequence