Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03998

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03995 and BACOVA_03997 overlap by 20 nucleotidesBACOVA_03997 and BACOVA_03998 are separated by 2 nucleotidesBACOVA_03998 and BACOVA_03999 overlap by 8 nucleotides BACOVA_03996: BACOVA_03996 - hypothetical protein, at 330,365 to 331,492 _03996 BACOVA_03995: BACOVA_03995 - hypothetical protein, at 331,466 to 331,576 _03995 BACOVA_03997: BACOVA_03997 - glycosyltransferase, SP_1767 family, at 331,557 to 332,468 _03997 BACOVA_03998: BACOVA_03998 - polysaccharide biosynthesis protein, at 332,471 to 333,925 _03998 BACOVA_03999: BACOVA_03999 - hypothetical protein, at 333,918 to 335,030 _03999 Position (kb) 332 333 334Strain fitness (log2 ratio) -2 -1 0 1 2at 331.691 kb on - strand, within BACOVA_03997at 331.695 kb on + strand, within BACOVA_03997at 331.695 kb on + strand, within BACOVA_03997at 331.696 kb on - strand, within BACOVA_03997at 331.696 kb on - strand, within BACOVA_03997at 332.021 kb on - strand, within BACOVA_03997at 332.021 kb on - strand, within BACOVA_03997at 332.021 kb on - strand, within BACOVA_03997at 332.048 kb on - strand, within BACOVA_03997at 332.174 kb on + strand, within BACOVA_03997at 332.175 kb on - strand, within BACOVA_03997at 332.175 kb on - strand, within BACOVA_03997at 332.175 kb on - strand, within BACOVA_03997at 332.325 kb on - strand, within BACOVA_03997at 332.329 kb on - strand, within BACOVA_03997at 332.329 kb on - strand, within BACOVA_03997at 332.349 kb on + strand, within BACOVA_03997at 332.349 kb on + strand, within BACOVA_03997at 332.390 kb on - strandat 332.401 kb on + strandat 332.401 kb on + strandat 332.423 kb on - strandat 332.423 kb on - strandat 332.432 kb on + strandat 332.440 kb on - strandat 332.440 kb on - strandat 332.448 kb on - strandat 332.460 kb on + strandat 332.462 kb on + strandat 332.468 kb on + strandat 332.472 kb on + strandat 332.473 kb on - strandat 332.473 kb on - strandat 332.475 kb on - strandat 332.517 kb on + strandat 332.534 kb on + strandat 332.534 kb on + strandat 332.535 kb on - strandat 332.538 kb on + strandat 332.593 kb on + strandat 332.613 kb on + strandat 332.613 kb on + strandat 332.633 kb on + strand, within BACOVA_03998at 332.716 kb on - strand, within BACOVA_03998at 332.735 kb on + strand, within BACOVA_03998at 332.738 kb on - strand, within BACOVA_03998at 332.738 kb on - strand, within BACOVA_03998at 333.070 kb on - strand, within BACOVA_03998at 333.209 kb on - strand, within BACOVA_03998at 333.217 kb on - strand, within BACOVA_03998at 333.217 kb on - strand, within BACOVA_03998at 333.300 kb on - strand, within BACOVA_03998at 333.411 kb on + strand, within BACOVA_03998at 333.667 kb on + strand, within BACOVA_03998at 333.788 kb on + strandat 333.813 kb on - strandat 333.864 kb on + strandat 333.864 kb on + strandat 333.882 kb on + strandat 333.910 kb on + strandat 333.916 kb on + strandat 333.939 kb on - strandat 333.939 kb on - strandat 334.157 kb on - strand, within BACOVA_03999at 334.212 kb on + strand, within BACOVA_03999at 334.212 kb on + strand, within BACOVA_03999at 334.233 kb on - strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.235 kb on - strand, within BACOVA_03999at 334.238 kb on - strand, within BACOVA_03999at 334.250 kb on - strand, within BACOVA_03999at 334.258 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.291 kb on + strand, within BACOVA_03999at 334.291 kb on + strand, within BACOVA_03999at 334.292 kb on - strand, within BACOVA_03999at 334.292 kb on - strand, within BACOVA_03999at 334.296 kb on - strand, within BACOVA_03999at 334.321 kb on + strand, within BACOVA_03999at 334.346 kb on + strand, within BACOVA_03999at 334.355 kb on + strand, within BACOVA_03999at 334.355 kb on + strand, within BACOVA_03999at 334.366 kb on + strand, within BACOVA_03999at 334.391 kb on - strand, within BACOVA_03999at 334.458 kb on + strand, within BACOVA_03999at 334.459 kb on - strand, within BACOVA_03999at 334.459 kb on - strand, within BACOVA_03999at 334.526 kb on - strand, within BACOVA_03999at 334.542 kb on + strand, within BACOVA_03999at 334.559 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.566 kb on - strand, within BACOVA_03999at 334.567 kb on + strand, within BACOVA_03999at 334.573 kb on + strand, within BACOVA_03999at 334.592 kb on + strand, within BACOVA_03999at 334.688 kb on - strand, within BACOVA_03999at 334.803 kb on - strand, within BACOVA_03999at 334.855 kb on - strand, within BACOVA_03999at 334.859 kb on + strand, within BACOVA_03999at 334.864 kb on + strand, within BACOVA_03999

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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331,691 - BACOVA_03997 0.15 +0.7
331,695 + BACOVA_03997 0.15 -0.5
331,695 + BACOVA_03997 0.15 +0.5
331,696 - BACOVA_03997 0.15 +0.5
331,696 - BACOVA_03997 0.15 +2.4
332,021 - BACOVA_03997 0.51 +0.6
332,021 - BACOVA_03997 0.51 +0.0
332,021 - BACOVA_03997 0.51 -2.1
332,048 - BACOVA_03997 0.54 -0.4
332,174 + BACOVA_03997 0.68 -0.8
332,175 - BACOVA_03997 0.68 +0.0
332,175 - BACOVA_03997 0.68 +1.0
332,175 - BACOVA_03997 0.68 -1.8
332,325 - BACOVA_03997 0.84 +1.3
332,329 - BACOVA_03997 0.85 -0.0
332,329 - BACOVA_03997 0.85 +1.7
332,349 + BACOVA_03997 0.87 -0.4
332,349 + BACOVA_03997 0.87 +1.0
332,390 - -0.2
332,401 + -0.5
332,401 + +1.0
332,423 - -1.4
332,423 - +0.0
332,432 + -0.1
332,440 - +0.5
332,440 - +1.0
332,448 - +0.2
332,460 + +0.5
332,462 + +1.0
332,468 + +1.0
332,472 + +1.5
332,473 - -1.2
332,473 - +1.5
332,475 - +0.5
332,517 + +0.8
332,534 + +1.5
332,534 + -1.3
332,535 - +0.5
332,538 + +2.0
332,593 + -2.3
332,613 + +1.3
332,613 + +0.6
332,633 + BACOVA_03998 0.11 -0.7
332,716 - BACOVA_03998 0.17 -0.5
332,735 + BACOVA_03998 0.18 +0.3
332,738 - BACOVA_03998 0.18 -1.0
332,738 - BACOVA_03998 0.18 -0.1
333,070 - BACOVA_03998 0.41 -0.3
333,209 - BACOVA_03998 0.51 +0.6
333,217 - BACOVA_03998 0.51 +0.1
333,217 - BACOVA_03998 0.51 -0.2
333,300 - BACOVA_03998 0.57 -0.1
333,411 + BACOVA_03998 0.65 -2.1
333,667 + BACOVA_03998 0.82 -1.0
333,788 + +0.6
333,813 - +1.5
333,864 + +1.6
333,864 + -0.8
333,882 + -1.1
333,910 + -0.1
333,916 + +0.6
333,939 - -0.2
333,939 - +1.3
334,157 - BACOVA_03999 0.21 +1.2
334,212 + BACOVA_03999 0.26 -0.7
334,212 + BACOVA_03999 0.26 +0.6
334,233 - BACOVA_03999 0.28 +0.4
334,234 + BACOVA_03999 0.28 -0.2
334,234 + BACOVA_03999 0.28 -0.2
334,234 + BACOVA_03999 0.28 -0.7
334,234 + BACOVA_03999 0.28 +0.3
334,234 + BACOVA_03999 0.28 +0.5
334,234 + BACOVA_03999 0.28 -0.2
334,235 - BACOVA_03999 0.28 +0.1
334,238 - BACOVA_03999 0.29 -0.1
334,250 - BACOVA_03999 0.30 +0.5
334,258 - BACOVA_03999 0.31 +1.0
334,290 - BACOVA_03999 0.33 +0.9
334,290 - BACOVA_03999 0.33 +1.0
334,290 - BACOVA_03999 0.33 -0.1
334,290 - BACOVA_03999 0.33 -1.0
334,291 + BACOVA_03999 0.34 +2.0
334,291 + BACOVA_03999 0.34 -0.2
334,292 - BACOVA_03999 0.34 +0.5
334,292 - BACOVA_03999 0.34 +1.0
334,296 - BACOVA_03999 0.34 +0.4
334,321 + BACOVA_03999 0.36 +0.2
334,346 + BACOVA_03999 0.38 +0.3
334,355 + BACOVA_03999 0.39 +0.7
334,355 + BACOVA_03999 0.39 +1.6
334,366 + BACOVA_03999 0.40 +0.7
334,391 - BACOVA_03999 0.42 +1.4
334,458 + BACOVA_03999 0.49 -0.3
334,459 - BACOVA_03999 0.49 -0.5
334,459 - BACOVA_03999 0.49 +0.6
334,526 - BACOVA_03999 0.55 +1.4
334,542 + BACOVA_03999 0.56 +1.7
334,559 + BACOVA_03999 0.58 +1.3
334,565 + BACOVA_03999 0.58 +0.7
334,565 + BACOVA_03999 0.58 +0.3
334,565 + BACOVA_03999 0.58 -1.0
334,565 + BACOVA_03999 0.58 +1.0
334,566 - BACOVA_03999 0.58 -0.7
334,567 + BACOVA_03999 0.58 +0.4
334,573 + BACOVA_03999 0.59 +1.1
334,592 + BACOVA_03999 0.61 +0.8
334,688 - BACOVA_03999 0.69 +0.9
334,803 - BACOVA_03999 0.80 +0.3
334,855 - BACOVA_03999 0.84 +0.4
334,859 + BACOVA_03999 0.85 -2.1
334,864 + BACOVA_03999 0.85 +0.3

Or see this region's nucleotide sequence