Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03472

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03471 and BACOVA_03472 overlap by 1 nucleotidesBACOVA_03472 and BACOVA_03473 overlap by 20 nucleotidesBACOVA_03473 and BACOVA_03474 are separated by 182 nucleotides BACOVA_03471: BACOVA_03471 - universal stress family protein, at 218,284 to 220,419 _03471 BACOVA_03472: BACOVA_03472 - ThiF family protein, at 220,419 to 221,135 _03472 BACOVA_03473: BACOVA_03473 - ABC transporter, ATP-binding protein, at 221,116 to 221,799 _03473 BACOVA_03474: BACOVA_03474 - hypothetical protein, at 221,982 to 222,899 _03474 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1at 219.422 kb on + strand, within BACOVA_03471at 219.422 kb on + strand, within BACOVA_03471at 219.513 kb on + strand, within BACOVA_03471at 219.513 kb on + strand, within BACOVA_03471at 219.590 kb on + strand, within BACOVA_03471at 219.596 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.735 kb on + strand, within BACOVA_03471at 219.777 kb on + strand, within BACOVA_03471at 219.783 kb on + strand, within BACOVA_03471at 219.796 kb on + strand, within BACOVA_03471at 219.804 kb on + strand, within BACOVA_03471at 219.810 kb on + strand, within BACOVA_03471at 219.951 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.110 kb on + strand, within BACOVA_03471at 220.187 kb on + strand, within BACOVA_03471at 220.187 kb on + strand, within BACOVA_03471at 220.197 kb on + strand, within BACOVA_03471at 220.225 kb on + strandat 220.225 kb on + strandat 220.281 kb on + strandat 220.289 kb on + strandat 220.372 kb on + strandat 220.398 kb on + strandat 220.417 kb on + strandat 220.579 kb on + strand, within BACOVA_03472at 220.601 kb on + strand, within BACOVA_03472at 220.601 kb on + strand, within BACOVA_03472at 220.604 kb on + strand, within BACOVA_03472at 220.607 kb on + strand, within BACOVA_03472at 220.679 kb on + strand, within BACOVA_03472at 220.679 kb on + strand, within BACOVA_03472at 220.687 kb on + strand, within BACOVA_03472at 220.687 kb on + strand, within BACOVA_03472at 220.767 kb on + strand, within BACOVA_03472at 220.841 kb on + strand, within BACOVA_03472at 220.886 kb on + strand, within BACOVA_03472at 221.079 kb on + strandat 221.079 kb on + strandat 221.079 kb on + strandat 221.081 kb on + strandat 221.115 kb on + strandat 221.133 kb on + strandat 221.142 kb on + strandat 221.771 kb on + strandat 221.839 kb on - strandat 221.868 kb on + strandat 221.873 kb on - strandat 221.877 kb on - strandat 221.877 kb on - strandat 221.911 kb on + strandat 221.911 kb on + strandat 221.912 kb on - strandat 221.915 kb on - strandat 221.915 kb on - strandat 221.987 kb on + strandat 221.990 kb on - strandat 222.006 kb on + strandat 222.024 kb on - strandat 222.040 kb on + strandat 222.088 kb on + strand, within BACOVA_03474at 222.088 kb on + strand, within BACOVA_03474at 222.093 kb on + strand, within BACOVA_03474at 222.093 kb on + strand, within BACOVA_03474at 222.093 kb on + strand, within BACOVA_03474at 222.093 kb on + strand, within BACOVA_03474at 222.094 kb on - strand, within BACOVA_03474at 222.098 kb on + strand, within BACOVA_03474at 222.099 kb on - strand, within BACOVA_03474at 222.116 kb on - strand, within BACOVA_03474at 222.120 kb on + strand, within BACOVA_03474at 222.121 kb on - strand, within BACOVA_03474at 222.124 kb on + strand, within BACOVA_03474at 222.125 kb on - strand, within BACOVA_03474

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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219,422 + BACOVA_03471 0.53 +0.6
219,422 + BACOVA_03471 0.53 -0.1
219,513 + BACOVA_03471 0.58 +0.7
219,513 + BACOVA_03471 0.58 -1.2
219,590 + BACOVA_03471 0.61 -2.0
219,596 + BACOVA_03471 0.61 -1.0
219,651 + BACOVA_03471 0.64 -0.3
219,651 + BACOVA_03471 0.64 -0.4
219,651 + BACOVA_03471 0.64 -0.2
219,651 + BACOVA_03471 0.64 -0.4
219,735 + BACOVA_03471 0.68 +0.2
219,777 + BACOVA_03471 0.70 -0.6
219,783 + BACOVA_03471 0.70 +0.8
219,796 + BACOVA_03471 0.71 -0.1
219,804 + BACOVA_03471 0.71 -0.0
219,810 + BACOVA_03471 0.71 -0.3
219,951 + BACOVA_03471 0.78 +1.3
220,026 + BACOVA_03471 0.82 -0.9
220,026 + BACOVA_03471 0.82 +0.4
220,026 + BACOVA_03471 0.82 +0.2
220,110 + BACOVA_03471 0.85 -0.1
220,187 + BACOVA_03471 0.89 -0.6
220,187 + BACOVA_03471 0.89 -0.1
220,197 + BACOVA_03471 0.90 -0.6
220,225 + -0.8
220,225 + -0.8
220,281 + -1.4
220,289 + -1.4
220,372 + +0.8
220,398 + -0.4
220,417 + +1.2
220,579 + BACOVA_03472 0.22 +0.5
220,601 + BACOVA_03472 0.25 -1.0
220,601 + BACOVA_03472 0.25 -2.4
220,604 + BACOVA_03472 0.26 -0.8
220,607 + BACOVA_03472 0.26 -0.2
220,679 + BACOVA_03472 0.36 -1.2
220,679 + BACOVA_03472 0.36 +0.6
220,687 + BACOVA_03472 0.37 -0.4
220,687 + BACOVA_03472 0.37 -0.2
220,767 + BACOVA_03472 0.49 -0.6
220,841 + BACOVA_03472 0.59 +0.1
220,886 + BACOVA_03472 0.65 +0.1
221,079 + -0.9
221,079 + -0.3
221,079 + -1.3
221,081 + +0.2
221,115 + +0.0
221,133 + +0.1
221,142 + +0.0
221,771 + -0.0
221,839 - +0.2
221,868 + +0.2
221,873 - +0.1
221,877 - -0.2
221,877 - -0.2
221,911 + -1.2
221,911 + -1.8
221,912 - +0.2
221,915 - -0.6
221,915 - -0.6
221,987 + -0.2
221,990 - +0.4
222,006 + +0.8
222,024 - -1.1
222,040 + +0.3
222,088 + BACOVA_03474 0.12 -0.4
222,088 + BACOVA_03474 0.12 +0.6
222,093 + BACOVA_03474 0.12 +0.7
222,093 + BACOVA_03474 0.12 +0.6
222,093 + BACOVA_03474 0.12 +0.4
222,093 + BACOVA_03474 0.12 -2.2
222,094 - BACOVA_03474 0.12 +0.2
222,098 + BACOVA_03474 0.13 -0.2
222,099 - BACOVA_03474 0.13 -0.2
222,116 - BACOVA_03474 0.15 -0.5
222,120 + BACOVA_03474 0.15 -0.8
222,121 - BACOVA_03474 0.15 +0.5
222,124 + BACOVA_03474 0.15 -0.6
222,125 - BACOVA_03474 0.16 -0.2

Or see this region's nucleotide sequence