Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03099

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03098 and BACOVA_03099 are separated by 25 nucleotidesBACOVA_03099 and BACOVA_03100 overlap by 1 nucleotides BACOVA_03098: BACOVA_03098 - SusD family protein, at 181,503 to 183,116 _03098 BACOVA_03099: BACOVA_03099 - Fibrobacter succinogene major paralogous domain protein, at 183,142 to 185,256 _03099 BACOVA_03100: BACOVA_03100 - glycosyl hydrolase family 2, sugar binding domain protein, at 185,256 to 187,931 _03100 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 182.257 kb on - strand, within BACOVA_03098at 182.288 kb on + strand, within BACOVA_03098at 182.289 kb on - strand, within BACOVA_03098at 182.289 kb on - strand, within BACOVA_03098at 182.387 kb on + strand, within BACOVA_03098at 182.388 kb on - strand, within BACOVA_03098at 182.388 kb on - strand, within BACOVA_03098at 182.432 kb on + strand, within BACOVA_03098at 182.472 kb on - strand, within BACOVA_03098at 182.487 kb on + strand, within BACOVA_03098at 182.487 kb on + strand, within BACOVA_03098at 182.488 kb on - strand, within BACOVA_03098at 182.514 kb on - strand, within BACOVA_03098at 182.526 kb on + strand, within BACOVA_03098at 182.527 kb on - strand, within BACOVA_03098at 182.543 kb on - strand, within BACOVA_03098at 182.667 kb on - strand, within BACOVA_03098at 182.737 kb on + strand, within BACOVA_03098at 182.738 kb on - strand, within BACOVA_03098at 182.738 kb on - strand, within BACOVA_03098at 182.738 kb on - strand, within BACOVA_03098at 182.738 kb on - strand, within BACOVA_03098at 182.755 kb on - strand, within BACOVA_03098at 182.756 kb on + strand, within BACOVA_03098at 182.757 kb on - strand, within BACOVA_03098at 182.757 kb on - strand, within BACOVA_03098at 182.800 kb on - strand, within BACOVA_03098at 182.804 kb on + strand, within BACOVA_03098at 182.875 kb on - strand, within BACOVA_03098at 182.918 kb on - strand, within BACOVA_03098at 182.958 kb on + strandat 182.989 kb on + strandat 182.994 kb on - strandat 182.994 kb on - strandat 183.001 kb on - strandat 183.111 kb on + strandat 183.112 kb on - strandat 183.115 kb on - strandat 183.127 kb on - strandat 183.162 kb on - strandat 183.163 kb on + strandat 183.163 kb on + strandat 183.244 kb on - strandat 183.299 kb on + strandat 183.299 kb on + strandat 183.299 kb on + strandat 183.300 kb on - strandat 183.301 kb on + strandat 183.306 kb on + strandat 183.374 kb on + strand, within BACOVA_03099at 183.375 kb on - strand, within BACOVA_03099at 183.378 kb on - strand, within BACOVA_03099at 183.378 kb on - strand, within BACOVA_03099at 183.379 kb on + strand, within BACOVA_03099at 183.450 kb on + strand, within BACOVA_03099at 183.451 kb on - strand, within BACOVA_03099at 183.518 kb on + strand, within BACOVA_03099at 183.518 kb on + strand, within BACOVA_03099at 183.581 kb on + strand, within BACOVA_03099at 183.588 kb on - strand, within BACOVA_03099at 183.658 kb on + strand, within BACOVA_03099at 183.709 kb on + strand, within BACOVA_03099at 183.778 kb on + strand, within BACOVA_03099at 183.778 kb on + strand, within BACOVA_03099at 183.778 kb on + strand, within BACOVA_03099at 183.779 kb on - strand, within BACOVA_03099at 183.821 kb on + strand, within BACOVA_03099at 183.870 kb on + strand, within BACOVA_03099at 183.937 kb on + strand, within BACOVA_03099at 183.938 kb on - strand, within BACOVA_03099at 184.027 kb on - strand, within BACOVA_03099at 184.027 kb on - strand, within BACOVA_03099at 184.047 kb on + strand, within BACOVA_03099at 184.047 kb on + strand, within BACOVA_03099at 184.068 kb on + strand, within BACOVA_03099at 184.167 kb on + strand, within BACOVA_03099at 184.167 kb on + strand, within BACOVA_03099at 184.167 kb on + strand, within BACOVA_03099at 184.168 kb on - strand, within BACOVA_03099at 184.176 kb on - strand, within BACOVA_03099at 184.176 kb on - strand, within BACOVA_03099at 184.213 kb on + strand, within BACOVA_03099at 184.213 kb on + strand, within BACOVA_03099at 184.213 kb on + strand, within BACOVA_03099at 184.213 kb on + strand, within BACOVA_03099at 184.216 kb on - strand, within BACOVA_03099at 184.236 kb on + strand, within BACOVA_03099at 184.237 kb on - strand, within BACOVA_03099at 184.273 kb on - strand, within BACOVA_03099at 184.291 kb on - strand, within BACOVA_03099at 184.296 kb on - strand, within BACOVA_03099at 184.335 kb on - strand, within BACOVA_03099at 184.386 kb on + strand, within BACOVA_03099at 184.392 kb on + strand, within BACOVA_03099at 184.392 kb on + strand, within BACOVA_03099at 184.393 kb on - strand, within BACOVA_03099at 184.405 kb on - strand, within BACOVA_03099at 184.405 kb on - strand, within BACOVA_03099at 184.405 kb on - strand, within BACOVA_03099at 184.405 kb on - strand, within BACOVA_03099at 184.405 kb on - strand, within BACOVA_03099at 184.474 kb on - strand, within BACOVA_03099at 184.474 kb on - strand, within BACOVA_03099at 184.541 kb on + strand, within BACOVA_03099at 184.542 kb on - strand, within BACOVA_03099at 184.542 kb on - strand, within BACOVA_03099at 184.676 kb on + strand, within BACOVA_03099at 184.677 kb on - strand, within BACOVA_03099at 184.837 kb on + strand, within BACOVA_03099at 184.839 kb on + strand, within BACOVA_03099at 184.839 kb on + strand, within BACOVA_03099at 184.839 kb on + strand, within BACOVA_03099at 184.840 kb on - strand, within BACOVA_03099at 184.840 kb on - strand, within BACOVA_03099at 184.840 kb on - strand, within BACOVA_03099at 184.842 kb on + strand, within BACOVA_03099at 184.843 kb on - strand, within BACOVA_03099at 184.843 kb on - strand, within BACOVA_03099at 184.843 kb on - strand, within BACOVA_03099at 184.843 kb on - strand, within BACOVA_03099at 184.845 kb on + strand, within BACOVA_03099at 184.845 kb on + strand, within BACOVA_03099at 184.846 kb on - strand, within BACOVA_03099at 184.848 kb on + strand, within BACOVA_03099at 184.967 kb on - strand, within BACOVA_03099at 184.967 kb on - strand, within BACOVA_03099at 184.983 kb on - strand, within BACOVA_03099at 185.079 kb on + strandat 185.080 kb on - strandat 185.107 kb on - strandat 185.115 kb on + strandat 185.115 kb on + strandat 185.115 kb on + strandat 185.116 kb on - strandat 185.116 kb on - strandat 185.116 kb on - strandat 185.119 kb on + strandat 185.119 kb on + strandat 185.161 kb on + strandat 185.165 kb on + strandat 185.182 kb on - strandat 185.219 kb on + strandat 185.220 kb on - strandat 185.226 kb on + strandat 185.264 kb on - strandat 185.264 kb on - strandat 185.271 kb on + strandat 185.271 kb on + strandat 185.271 kb on + strandat 185.272 kb on - strandat 185.272 kb on - strandat 185.272 kb on - strandat 185.274 kb on - strandat 185.278 kb on + strandat 185.279 kb on - strandat 185.279 kb on - strandat 185.283 kb on - strandat 185.297 kb on - strandat 185.309 kb on - strandat 185.447 kb on + strandat 185.556 kb on + strand, within BACOVA_03100at 185.593 kb on + strand, within BACOVA_03100at 185.593 kb on + strand, within BACOVA_03100at 185.665 kb on - strand, within BACOVA_03100at 185.712 kb on + strand, within BACOVA_03100at 185.713 kb on - strand, within BACOVA_03100at 185.713 kb on - strand, within BACOVA_03100at 185.715 kb on - strand, within BACOVA_03100at 185.747 kb on + strand, within BACOVA_03100at 185.747 kb on + strand, within BACOVA_03100at 185.787 kb on + strand, within BACOVA_03100at 185.790 kb on - strand, within BACOVA_03100at 185.790 kb on - strand, within BACOVA_03100at 185.790 kb on - strand, within BACOVA_03100at 185.811 kb on - strand, within BACOVA_03100at 185.836 kb on + strand, within BACOVA_03100at 185.836 kb on + strand, within BACOVA_03100at 185.836 kb on + strand, within BACOVA_03100at 185.963 kb on + strand, within BACOVA_03100at 185.964 kb on - strand, within BACOVA_03100at 185.964 kb on - strand, within BACOVA_03100at 185.964 kb on - strand, within BACOVA_03100at 186.076 kb on - strand, within BACOVA_03100at 186.079 kb on + strand, within BACOVA_03100at 186.080 kb on - strand, within BACOVA_03100at 186.084 kb on - strand, within BACOVA_03100at 186.138 kb on - strand, within BACOVA_03100at 186.159 kb on + strand, within BACOVA_03100at 186.238 kb on - strand, within BACOVA_03100at 186.238 kb on - strand, within BACOVA_03100

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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182,257 - BACOVA_03098 0.47 +0.2
182,288 + BACOVA_03098 0.49 +1.4
182,289 - BACOVA_03098 0.49 -2.6
182,289 - BACOVA_03098 0.49 -0.3
182,387 + BACOVA_03098 0.55 +0.3
182,388 - BACOVA_03098 0.55 -0.6
182,388 - BACOVA_03098 0.55 -0.2
182,432 + BACOVA_03098 0.58 -0.8
182,472 - BACOVA_03098 0.60 -0.9
182,487 + BACOVA_03098 0.61 -1.2
182,487 + BACOVA_03098 0.61 -1.1
182,488 - BACOVA_03098 0.61 +0.4
182,514 - BACOVA_03098 0.63 +0.5
182,526 + BACOVA_03098 0.63 +1.1
182,527 - BACOVA_03098 0.63 -0.2
182,543 - BACOVA_03098 0.64 -0.0
182,667 - BACOVA_03098 0.72 -0.0
182,737 + BACOVA_03098 0.76 +0.6
182,738 - BACOVA_03098 0.77 -0.5
182,738 - BACOVA_03098 0.77 +0.6
182,738 - BACOVA_03098 0.77 +0.4
182,738 - BACOVA_03098 0.77 +1.2
182,755 - BACOVA_03098 0.78 -0.5
182,756 + BACOVA_03098 0.78 -0.4
182,757 - BACOVA_03098 0.78 -1.5
182,757 - BACOVA_03098 0.78 +1.9
182,800 - BACOVA_03098 0.80 +0.5
182,804 + BACOVA_03098 0.81 -2.4
182,875 - BACOVA_03098 0.85 +1.4
182,918 - BACOVA_03098 0.88 +0.4
182,958 + +2.4
182,989 + +0.6
182,994 - -0.6
182,994 - +0.8
183,001 - +0.1
183,111 + +0.0
183,112 - -1.8
183,115 - +0.3
183,127 - -0.4
183,162 - -2.1
183,163 + +0.8
183,163 + -0.2
183,244 - +0.1
183,299 + -0.8
183,299 + -1.2
183,299 + -0.3
183,300 - -0.3
183,301 + +2.4
183,306 + +0.8
183,374 + BACOVA_03099 0.11 +0.1
183,375 - BACOVA_03099 0.11 +0.4
183,378 - BACOVA_03099 0.11 -0.3
183,378 - BACOVA_03099 0.11 -0.7
183,379 + BACOVA_03099 0.11 +0.2
183,450 + BACOVA_03099 0.15 +0.8
183,451 - BACOVA_03099 0.15 +0.1
183,518 + BACOVA_03099 0.18 -0.8
183,518 + BACOVA_03099 0.18 -0.6
183,581 + BACOVA_03099 0.21 -0.4
183,588 - BACOVA_03099 0.21 +0.1
183,658 + BACOVA_03099 0.24 -1.7
183,709 + BACOVA_03099 0.27 -0.8
183,778 + BACOVA_03099 0.30 -0.1
183,778 + BACOVA_03099 0.30 -2.2
183,778 + BACOVA_03099 0.30 +1.7
183,779 - BACOVA_03099 0.30 -0.3
183,821 + BACOVA_03099 0.32 -0.1
183,870 + BACOVA_03099 0.34 -0.5
183,937 + BACOVA_03099 0.38 -1.1
183,938 - BACOVA_03099 0.38 -0.2
184,027 - BACOVA_03099 0.42 +0.5
184,027 - BACOVA_03099 0.42 +0.2
184,047 + BACOVA_03099 0.43 +0.1
184,047 + BACOVA_03099 0.43 +0.8
184,068 + BACOVA_03099 0.44 +0.2
184,167 + BACOVA_03099 0.48 +1.8
184,167 + BACOVA_03099 0.48 -1.0
184,167 + BACOVA_03099 0.48 +0.8
184,168 - BACOVA_03099 0.49 -0.2
184,176 - BACOVA_03099 0.49 -0.2
184,176 - BACOVA_03099 0.49 +0.5
184,213 + BACOVA_03099 0.51 +0.3
184,213 + BACOVA_03099 0.51 +0.2
184,213 + BACOVA_03099 0.51 -0.3
184,213 + BACOVA_03099 0.51 +0.6
184,216 - BACOVA_03099 0.51 -0.0
184,236 + BACOVA_03099 0.52 +1.1
184,237 - BACOVA_03099 0.52 +0.7
184,273 - BACOVA_03099 0.53 +1.6
184,291 - BACOVA_03099 0.54 +0.9
184,296 - BACOVA_03099 0.55 -0.8
184,335 - BACOVA_03099 0.56 +0.8
184,386 + BACOVA_03099 0.59 +1.0
184,392 + BACOVA_03099 0.59 +0.2
184,392 + BACOVA_03099 0.59 -0.3
184,393 - BACOVA_03099 0.59 -0.9
184,405 - BACOVA_03099 0.60 -0.2
184,405 - BACOVA_03099 0.60 -0.7
184,405 - BACOVA_03099 0.60 +0.8
184,405 - BACOVA_03099 0.60 -0.2
184,405 - BACOVA_03099 0.60 +0.2
184,474 - BACOVA_03099 0.63 -0.3
184,474 - BACOVA_03099 0.63 +1.1
184,541 + BACOVA_03099 0.66 -0.3
184,542 - BACOVA_03099 0.66 +0.1
184,542 - BACOVA_03099 0.66 +0.6
184,676 + BACOVA_03099 0.73 +0.0
184,677 - BACOVA_03099 0.73 -0.7
184,837 + BACOVA_03099 0.80 -0.2
184,839 + BACOVA_03099 0.80 -0.5
184,839 + BACOVA_03099 0.80 +0.3
184,839 + BACOVA_03099 0.80 +0.6
184,840 - BACOVA_03099 0.80 +0.5
184,840 - BACOVA_03099 0.80 +0.1
184,840 - BACOVA_03099 0.80 -0.0
184,842 + BACOVA_03099 0.80 +0.9
184,843 - BACOVA_03099 0.80 +0.3
184,843 - BACOVA_03099 0.80 +0.1
184,843 - BACOVA_03099 0.80 +1.0
184,843 - BACOVA_03099 0.80 +0.2
184,845 + BACOVA_03099 0.81 +0.4
184,845 + BACOVA_03099 0.81 -0.1
184,846 - BACOVA_03099 0.81 +0.9
184,848 + BACOVA_03099 0.81 -0.1
184,967 - BACOVA_03099 0.86 -0.9
184,967 - BACOVA_03099 0.86 +1.1
184,983 - BACOVA_03099 0.87 -0.6
185,079 + -1.5
185,080 - +0.1
185,107 - +0.1
185,115 + -0.1
185,115 + -0.4
185,115 + +1.0
185,116 - -0.6
185,116 - -0.0
185,116 - -0.2
185,119 + -0.2
185,119 + +1.8
185,161 + -0.1
185,165 + +0.0
185,182 - +0.3
185,219 + -1.8
185,220 - -0.2
185,226 + -0.5
185,264 - +0.3
185,264 - +0.8
185,271 + -1.2
185,271 + -0.6
185,271 + +0.1
185,272 - +0.7
185,272 - +0.2
185,272 - +0.2
185,274 - +1.8
185,278 + +1.1
185,279 - -0.2
185,279 - +0.0
185,283 - +0.3
185,297 - +0.0
185,309 - -0.2
185,447 + +0.8
185,556 + BACOVA_03100 0.11 -0.4
185,593 + BACOVA_03100 0.13 -0.3
185,593 + BACOVA_03100 0.13 -0.9
185,665 - BACOVA_03100 0.15 +1.6
185,712 + BACOVA_03100 0.17 -0.7
185,713 - BACOVA_03100 0.17 +1.0
185,713 - BACOVA_03100 0.17 +0.2
185,715 - BACOVA_03100 0.17 +1.1
185,747 + BACOVA_03100 0.18 +0.3
185,747 + BACOVA_03100 0.18 -0.8
185,787 + BACOVA_03100 0.20 -0.2
185,790 - BACOVA_03100 0.20 -2.0
185,790 - BACOVA_03100 0.20 -1.2
185,790 - BACOVA_03100 0.20 +0.1
185,811 - BACOVA_03100 0.21 -0.9
185,836 + BACOVA_03100 0.22 +0.4
185,836 + BACOVA_03100 0.22 -0.0
185,836 + BACOVA_03100 0.22 +0.1
185,963 + BACOVA_03100 0.26 +0.8
185,964 - BACOVA_03100 0.26 +0.3
185,964 - BACOVA_03100 0.26 +0.6
185,964 - BACOVA_03100 0.26 +0.8
186,076 - BACOVA_03100 0.31 -0.8
186,079 + BACOVA_03100 0.31 -0.4
186,080 - BACOVA_03100 0.31 +1.2
186,084 - BACOVA_03100 0.31 +0.3
186,138 - BACOVA_03100 0.33 -1.1
186,159 + BACOVA_03100 0.34 -0.9
186,238 - BACOVA_03100 0.37 -0.8
186,238 - BACOVA_03100 0.37 -0.7

Or see this region's nucleotide sequence