Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01748

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01747 and BACOVA_01748 are separated by 66 nucleotidesBACOVA_01748 and BACOVA_01749 are separated by 1 nucleotidesBACOVA_01749 and BACOVA_01750 are separated by 16 nucleotides BACOVA_01747: BACOVA_01747 - hypothetical protein, at 172,769 to 173,731 _01747 BACOVA_01748: BACOVA_01748 - hypothetical protein, at 173,798 to 174,964 _01748 BACOVA_01749: BACOVA_01749 - hypothetical protein, at 174,966 to 175,934 _01749 BACOVA_01750: BACOVA_01750 - hypothetical protein, at 175,951 to 176,913 _01750 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.798 kb on + strandat 172.799 kb on - strandat 172.799 kb on - strandat 172.814 kb on - strandat 172.827 kb on + strandat 172.827 kb on + strandat 172.839 kb on + strandat 172.852 kb on + strandat 172.853 kb on - strandat 172.860 kb on + strandat 172.895 kb on + strand, within BACOVA_01747at 172.979 kb on - strand, within BACOVA_01747at 172.979 kb on - strand, within BACOVA_01747at 172.979 kb on - strand, within BACOVA_01747at 172.981 kb on - strand, within BACOVA_01747at 173.027 kb on + strand, within BACOVA_01747at 173.027 kb on + strand, within BACOVA_01747at 173.027 kb on + strand, within BACOVA_01747at 173.027 kb on + strand, within BACOVA_01747at 173.027 kb on + strand, within BACOVA_01747at 173.035 kb on - strand, within BACOVA_01747at 173.035 kb on - strand, within BACOVA_01747at 173.047 kb on - strand, within BACOVA_01747at 173.079 kb on + strand, within BACOVA_01747at 173.080 kb on - strand, within BACOVA_01747at 173.134 kb on - strand, within BACOVA_01747at 173.134 kb on - strand, within BACOVA_01747at 173.224 kb on - strand, within BACOVA_01747at 173.305 kb on + strand, within BACOVA_01747at 173.313 kb on - strand, within BACOVA_01747at 173.403 kb on + strand, within BACOVA_01747at 173.409 kb on - strand, within BACOVA_01747at 173.493 kb on - strand, within BACOVA_01747at 173.543 kb on + strand, within BACOVA_01747at 173.546 kb on - strand, within BACOVA_01747at 173.550 kb on + strand, within BACOVA_01747at 173.551 kb on - strand, within BACOVA_01747at 173.551 kb on - strand, within BACOVA_01747at 173.551 kb on - strand, within BACOVA_01747at 173.570 kb on - strand, within BACOVA_01747at 173.570 kb on - strand, within BACOVA_01747at 173.688 kb on + strandat 173.688 kb on + strandat 173.727 kb on + strandat 173.746 kb on - strandat 173.746 kb on - strandat 173.777 kb on + strandat 173.780 kb on + strandat 173.783 kb on - strandat 173.786 kb on - strandat 173.792 kb on - strandat 173.794 kb on - strandat 173.841 kb on + strandat 173.841 kb on + strandat 173.849 kb on + strandat 173.849 kb on + strandat 173.849 kb on + strandat 173.852 kb on - strandat 173.852 kb on - strandat 173.859 kb on + strandat 173.862 kb on - strandat 173.921 kb on - strand, within BACOVA_01748at 173.921 kb on - strand, within BACOVA_01748at 174.069 kb on + strand, within BACOVA_01748at 174.153 kb on + strand, within BACOVA_01748at 174.154 kb on - strand, within BACOVA_01748at 174.156 kb on + strand, within BACOVA_01748at 174.157 kb on - strand, within BACOVA_01748at 174.159 kb on + strand, within BACOVA_01748at 174.159 kb on + strand, within BACOVA_01748at 174.181 kb on + strand, within BACOVA_01748at 174.181 kb on + strand, within BACOVA_01748at 174.181 kb on + strand, within BACOVA_01748at 174.213 kb on + strand, within BACOVA_01748at 174.215 kb on + strand, within BACOVA_01748at 174.225 kb on + strand, within BACOVA_01748at 174.301 kb on - strand, within BACOVA_01748at 174.355 kb on + strand, within BACOVA_01748at 174.356 kb on - strand, within BACOVA_01748at 174.361 kb on + strand, within BACOVA_01748at 174.361 kb on + strand, within BACOVA_01748at 174.361 kb on + strand, within BACOVA_01748at 174.413 kb on - strand, within BACOVA_01748at 174.415 kb on - strand, within BACOVA_01748at 174.418 kb on + strand, within BACOVA_01748at 174.434 kb on + strand, within BACOVA_01748at 174.436 kb on + strand, within BACOVA_01748at 174.437 kb on - strand, within BACOVA_01748at 174.437 kb on - strand, within BACOVA_01748at 174.439 kb on - strand, within BACOVA_01748at 174.440 kb on + strand, within BACOVA_01748at 174.474 kb on + strand, within BACOVA_01748at 174.474 kb on + strand, within BACOVA_01748at 174.475 kb on + strand, within BACOVA_01748at 174.483 kb on + strand, within BACOVA_01748at 174.555 kb on - strand, within BACOVA_01748at 174.555 kb on - strand, within BACOVA_01748at 174.555 kb on - strand, within BACOVA_01748at 174.589 kb on + strand, within BACOVA_01748at 174.626 kb on - strand, within BACOVA_01748at 174.626 kb on - strand, within BACOVA_01748at 174.626 kb on - strand, within BACOVA_01748at 174.627 kb on + strand, within BACOVA_01748at 174.627 kb on + strand, within BACOVA_01748at 174.628 kb on - strand, within BACOVA_01748at 174.629 kb on + strand, within BACOVA_01748at 174.630 kb on - strand, within BACOVA_01748at 174.631 kb on + strand, within BACOVA_01748at 174.631 kb on + strand, within BACOVA_01748at 174.631 kb on + strand, within BACOVA_01748at 174.631 kb on + strand, within BACOVA_01748at 174.632 kb on - strand, within BACOVA_01748at 174.636 kb on - strand, within BACOVA_01748at 174.638 kb on + strand, within BACOVA_01748at 174.740 kb on + strand, within BACOVA_01748at 174.740 kb on + strand, within BACOVA_01748at 174.762 kb on + strand, within BACOVA_01748at 174.789 kb on + strand, within BACOVA_01748at 174.833 kb on - strand, within BACOVA_01748at 174.833 kb on - strand, within BACOVA_01748at 174.861 kb on - strandat 174.891 kb on - strandat 174.894 kb on - strandat 174.924 kb on - strandat 175.003 kb on - strandat 175.041 kb on - strandat 175.056 kb on - strandat 175.063 kb on - strand, within BACOVA_01749at 175.079 kb on - strand, within BACOVA_01749at 175.094 kb on + strand, within BACOVA_01749at 175.121 kb on + strand, within BACOVA_01749at 175.121 kb on + strand, within BACOVA_01749at 175.143 kb on - strand, within BACOVA_01749at 175.218 kb on + strand, within BACOVA_01749at 175.218 kb on + strand, within BACOVA_01749at 175.219 kb on - strand, within BACOVA_01749at 175.219 kb on - strand, within BACOVA_01749at 175.219 kb on - strand, within BACOVA_01749at 175.223 kb on - strand, within BACOVA_01749at 175.261 kb on - strand, within BACOVA_01749at 175.264 kb on + strand, within BACOVA_01749at 175.277 kb on - strand, within BACOVA_01749at 175.306 kb on + strand, within BACOVA_01749at 175.312 kb on + strand, within BACOVA_01749at 175.356 kb on + strand, within BACOVA_01749at 175.357 kb on - strand, within BACOVA_01749at 175.423 kb on - strand, within BACOVA_01749at 175.449 kb on - strand, within BACOVA_01749at 175.458 kb on - strand, within BACOVA_01749at 175.460 kb on + strand, within BACOVA_01749at 175.463 kb on + strand, within BACOVA_01749at 175.514 kb on + strand, within BACOVA_01749at 175.517 kb on + strand, within BACOVA_01749at 175.542 kb on + strand, within BACOVA_01749at 175.543 kb on - strand, within BACOVA_01749at 175.587 kb on + strand, within BACOVA_01749at 175.667 kb on + strand, within BACOVA_01749at 175.726 kb on - strand, within BACOVA_01749at 175.752 kb on - strand, within BACOVA_01749at 175.755 kb on + strand, within BACOVA_01749at 175.757 kb on - strand, within BACOVA_01749at 175.759 kb on + strand, within BACOVA_01749at 175.762 kb on + strand, within BACOVA_01749at 175.762 kb on + strand, within BACOVA_01749at 175.764 kb on + strand, within BACOVA_01749at 175.764 kb on + strand, within BACOVA_01749at 175.764 kb on + strand, within BACOVA_01749at 175.767 kb on - strand, within BACOVA_01749at 175.775 kb on - strand, within BACOVA_01749at 175.778 kb on + strand, within BACOVA_01749at 175.841 kb on + strandat 175.852 kb on + strandat 175.856 kb on + strandat 175.857 kb on - strandat 175.857 kb on - strandat 175.875 kb on - strandat 175.923 kb on + strandat 175.924 kb on - strandat 175.924 kb on - strandat 175.929 kb on - strandat 175.929 kb on - strandat 175.933 kb on - strandat 175.940 kb on - strandat 175.947 kb on - strandat 175.947 kb on - strandat 175.950 kb on + strandat 175.956 kb on + strandat 175.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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172,798 + -0.4
172,799 - -2.2
172,799 - +0.2
172,814 - -0.0
172,827 + -1.2
172,827 + +0.6
172,839 + -2.3
172,852 + +0.8
172,853 - +0.2
172,860 + +0.2
172,895 + BACOVA_01747 0.13 +1.0
172,979 - BACOVA_01747 0.22 -0.8
172,979 - BACOVA_01747 0.22 +0.4
172,979 - BACOVA_01747 0.22 +0.2
172,981 - BACOVA_01747 0.22 -1.0
173,027 + BACOVA_01747 0.27 -0.6
173,027 + BACOVA_01747 0.27 -2.5
173,027 + BACOVA_01747 0.27 +0.6
173,027 + BACOVA_01747 0.27 +0.2
173,027 + BACOVA_01747 0.27 -0.3
173,035 - BACOVA_01747 0.28 +1.0
173,035 - BACOVA_01747 0.28 -2.7
173,047 - BACOVA_01747 0.29 -0.6
173,079 + BACOVA_01747 0.32 -0.5
173,080 - BACOVA_01747 0.32 -0.2
173,134 - BACOVA_01747 0.38 +1.0
173,134 - BACOVA_01747 0.38 +0.4
173,224 - BACOVA_01747 0.47 +0.3
173,305 + BACOVA_01747 0.56 -0.3
173,313 - BACOVA_01747 0.56 -0.4
173,403 + BACOVA_01747 0.66 -0.9
173,409 - BACOVA_01747 0.66 -0.1
173,493 - BACOVA_01747 0.75 +0.6
173,543 + BACOVA_01747 0.80 -1.5
173,546 - BACOVA_01747 0.81 -0.6
173,550 + BACOVA_01747 0.81 -1.1
173,551 - BACOVA_01747 0.81 +0.7
173,551 - BACOVA_01747 0.81 +0.1
173,551 - BACOVA_01747 0.81 +0.3
173,570 - BACOVA_01747 0.83 -0.3
173,570 - BACOVA_01747 0.83 +0.7
173,688 + -1.3
173,688 + -0.8
173,727 + -0.4
173,746 - -0.2
173,746 - +0.4
173,777 + -1.2
173,780 + +1.3
173,783 - +0.1
173,786 - -0.3
173,792 - +1.0
173,794 - -0.6
173,841 + -0.3
173,841 + +0.3
173,849 + -0.0
173,849 + -0.6
173,849 + -0.0
173,852 - +0.8
173,852 - -1.0
173,859 + -0.9
173,862 - +1.7
173,921 - BACOVA_01748 0.11 -0.6
173,921 - BACOVA_01748 0.11 -1.0
174,069 + BACOVA_01748 0.23 +0.1
174,153 + BACOVA_01748 0.30 +0.0
174,154 - BACOVA_01748 0.31 -1.8
174,156 + BACOVA_01748 0.31 +0.4
174,157 - BACOVA_01748 0.31 +0.6
174,159 + BACOVA_01748 0.31 +0.6
174,159 + BACOVA_01748 0.31 -0.4
174,181 + BACOVA_01748 0.33 +2.6
174,181 + BACOVA_01748 0.33 -1.1
174,181 + BACOVA_01748 0.33 -0.2
174,213 + BACOVA_01748 0.36 -0.3
174,215 + BACOVA_01748 0.36 -0.0
174,225 + BACOVA_01748 0.37 -1.0
174,301 - BACOVA_01748 0.43 +0.6
174,355 + BACOVA_01748 0.48 -2.0
174,356 - BACOVA_01748 0.48 +0.1
174,361 + BACOVA_01748 0.48 -1.6
174,361 + BACOVA_01748 0.48 +0.1
174,361 + BACOVA_01748 0.48 -0.3
174,413 - BACOVA_01748 0.53 -1.8
174,415 - BACOVA_01748 0.53 -1.0
174,418 + BACOVA_01748 0.53 +1.2
174,434 + BACOVA_01748 0.54 -0.8
174,436 + BACOVA_01748 0.55 +0.8
174,437 - BACOVA_01748 0.55 -0.0
174,437 - BACOVA_01748 0.55 -0.8
174,439 - BACOVA_01748 0.55 -0.8
174,440 + BACOVA_01748 0.55 -1.6
174,474 + BACOVA_01748 0.58 +0.1
174,474 + BACOVA_01748 0.58 +1.2
174,475 + BACOVA_01748 0.58 -0.3
174,483 + BACOVA_01748 0.59 +1.6
174,555 - BACOVA_01748 0.65 +1.6
174,555 - BACOVA_01748 0.65 -0.1
174,555 - BACOVA_01748 0.65 -1.0
174,589 + BACOVA_01748 0.68 -1.2
174,626 - BACOVA_01748 0.71 -0.8
174,626 - BACOVA_01748 0.71 +0.7
174,626 - BACOVA_01748 0.71 +1.8
174,627 + BACOVA_01748 0.71 +0.5
174,627 + BACOVA_01748 0.71 -1.8
174,628 - BACOVA_01748 0.71 -0.4
174,629 + BACOVA_01748 0.71 -1.0
174,630 - BACOVA_01748 0.71 +1.4
174,631 + BACOVA_01748 0.71 -0.0
174,631 + BACOVA_01748 0.71 -0.2
174,631 + BACOVA_01748 0.71 -0.1
174,631 + BACOVA_01748 0.71 +1.6
174,632 - BACOVA_01748 0.71 -0.3
174,636 - BACOVA_01748 0.72 -0.6
174,638 + BACOVA_01748 0.72 -0.6
174,740 + BACOVA_01748 0.81 -1.1
174,740 + BACOVA_01748 0.81 -1.6
174,762 + BACOVA_01748 0.83 -0.0
174,789 + BACOVA_01748 0.85 -0.6
174,833 - BACOVA_01748 0.89 +0.8
174,833 - BACOVA_01748 0.89 -1.0
174,861 - -0.8
174,891 - -1.0
174,894 - -0.5
174,924 - +0.2
175,003 - -1.0
175,041 - +0.3
175,056 - -0.6
175,063 - BACOVA_01749 0.10 +0.2
175,079 - BACOVA_01749 0.12 -0.0
175,094 + BACOVA_01749 0.13 +1.0
175,121 + BACOVA_01749 0.16 +0.5
175,121 + BACOVA_01749 0.16 -0.1
175,143 - BACOVA_01749 0.18 -1.0
175,218 + BACOVA_01749 0.26 +0.4
175,218 + BACOVA_01749 0.26 +1.6
175,219 - BACOVA_01749 0.26 -1.0
175,219 - BACOVA_01749 0.26 -2.0
175,219 - BACOVA_01749 0.26 +0.6
175,223 - BACOVA_01749 0.27 +0.3
175,261 - BACOVA_01749 0.30 -0.3
175,264 + BACOVA_01749 0.31 +1.0
175,277 - BACOVA_01749 0.32 -0.4
175,306 + BACOVA_01749 0.35 -0.2
175,312 + BACOVA_01749 0.36 -0.0
175,356 + BACOVA_01749 0.40 +0.9
175,357 - BACOVA_01749 0.40 -2.1
175,423 - BACOVA_01749 0.47 +1.0
175,449 - BACOVA_01749 0.50 +0.5
175,458 - BACOVA_01749 0.51 -0.1
175,460 + BACOVA_01749 0.51 -2.0
175,463 + BACOVA_01749 0.51 +1.4
175,514 + BACOVA_01749 0.57 +0.4
175,517 + BACOVA_01749 0.57 -0.2
175,542 + BACOVA_01749 0.59 -0.1
175,543 - BACOVA_01749 0.60 +1.0
175,587 + BACOVA_01749 0.64 -1.0
175,667 + BACOVA_01749 0.72 +0.4
175,726 - BACOVA_01749 0.78 -1.0
175,752 - BACOVA_01749 0.81 -0.3
175,755 + BACOVA_01749 0.81 -0.5
175,757 - BACOVA_01749 0.82 +0.6
175,759 + BACOVA_01749 0.82 +0.5
175,762 + BACOVA_01749 0.82 -0.6
175,762 + BACOVA_01749 0.82 -0.0
175,764 + BACOVA_01749 0.82 -0.6
175,764 + BACOVA_01749 0.82 +1.0
175,764 + BACOVA_01749 0.82 -1.1
175,767 - BACOVA_01749 0.83 -0.2
175,775 - BACOVA_01749 0.83 -0.4
175,778 + BACOVA_01749 0.84 -1.2
175,841 + -0.2
175,852 + -0.6
175,856 + -0.6
175,857 - +1.0
175,857 - -0.4
175,875 - +1.5
175,923 + -1.5
175,924 - +0.2
175,924 - -1.2
175,929 - -1.8
175,929 - -0.0
175,933 - -0.0
175,940 - -0.2
175,947 - -0.4
175,947 - +0.2
175,950 + -0.6
175,956 + +0.4
175,957 - -0.2

Or see this region's nucleotide sequence