Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00902

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00899 and BACOVA_00900 are separated by 28 nucleotidesBACOVA_00900 and BACOVA_00902 are separated by 81 nucleotidesBACOVA_00902 and BACOVA_00901 overlap by 61 nucleotides BACOVA_00899: BACOVA_00899 - hypothetical protein, at 28,682 to 30,823 _00899 BACOVA_00900: BACOVA_00900 - putative membrane protein, at 30,852 to 31,718 _00900 BACOVA_00902: BACOVA_00902 - hypothetical protein, at 31,800 to 31,922 _00902 BACOVA_00901: BACOVA_00901 - Alpha-L-rhamnosidase N-terminal domain protein, at 31,862 to 34,519 _00901 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.830 kb on + strandat 30.831 kb on - strandat 30.831 kb on - strandat 30.862 kb on - strandat 30.865 kb on - strandat 30.869 kb on + strandat 30.903 kb on + strandat 30.949 kb on - strand, within BACOVA_00900at 30.949 kb on - strand, within BACOVA_00900at 30.963 kb on + strand, within BACOVA_00900at 30.975 kb on - strand, within BACOVA_00900at 31.023 kb on + strand, within BACOVA_00900at 31.044 kb on + strand, within BACOVA_00900at 31.045 kb on - strand, within BACOVA_00900at 31.045 kb on - strand, within BACOVA_00900at 31.057 kb on - strand, within BACOVA_00900at 31.062 kb on + strand, within BACOVA_00900at 31.063 kb on - strand, within BACOVA_00900at 31.085 kb on + strand, within BACOVA_00900at 31.086 kb on - strand, within BACOVA_00900at 31.146 kb on - strand, within BACOVA_00900at 31.146 kb on - strand, within BACOVA_00900at 31.172 kb on + strand, within BACOVA_00900at 31.179 kb on + strand, within BACOVA_00900at 31.315 kb on + strand, within BACOVA_00900at 31.374 kb on - strand, within BACOVA_00900at 31.401 kb on - strand, within BACOVA_00900at 31.411 kb on + strand, within BACOVA_00900at 31.412 kb on - strand, within BACOVA_00900at 31.412 kb on - strand, within BACOVA_00900at 31.412 kb on - strand, within BACOVA_00900at 31.424 kb on + strand, within BACOVA_00900at 31.454 kb on + strand, within BACOVA_00900at 31.455 kb on - strand, within BACOVA_00900at 31.485 kb on + strand, within BACOVA_00900at 31.560 kb on + strand, within BACOVA_00900at 31.610 kb on + strand, within BACOVA_00900at 31.610 kb on + strand, within BACOVA_00900at 31.661 kb on + strandat 31.662 kb on - strandat 31.662 kb on - strandat 31.695 kb on + strandat 31.698 kb on + strandat 31.699 kb on - strandat 31.726 kb on + strandat 31.727 kb on - strandat 31.730 kb on + strandat 31.731 kb on - strandat 31.747 kb on + strandat 31.749 kb on + strandat 31.771 kb on + strandat 31.813 kb on + strand, within BACOVA_00902at 31.814 kb on - strand, within BACOVA_00902at 31.817 kb on + strand, within BACOVA_00902at 31.878 kb on + strandat 31.878 kb on + strandat 31.987 kb on - strandat 31.990 kb on + strandat 31.990 kb on + strandat 32.067 kb on + strandat 32.149 kb on + strand, within BACOVA_00901at 32.150 kb on - strand, within BACOVA_00901at 32.154 kb on - strand, within BACOVA_00901at 32.186 kb on + strand, within BACOVA_00901at 32.187 kb on - strand, within BACOVA_00901at 32.187 kb on - strand, within BACOVA_00901at 32.187 kb on - strand, within BACOVA_00901at 32.190 kb on - strand, within BACOVA_00901at 32.205 kb on + strand, within BACOVA_00901at 32.311 kb on + strand, within BACOVA_00901at 32.314 kb on + strand, within BACOVA_00901at 32.333 kb on + strand, within BACOVA_00901at 32.384 kb on + strand, within BACOVA_00901at 32.385 kb on - strand, within BACOVA_00901at 32.385 kb on - strand, within BACOVA_00901at 32.386 kb on + strand, within BACOVA_00901at 32.387 kb on - strand, within BACOVA_00901at 32.414 kb on + strand, within BACOVA_00901at 32.417 kb on - strand, within BACOVA_00901at 32.495 kb on + strand, within BACOVA_00901at 32.496 kb on - strand, within BACOVA_00901at 32.496 kb on - strand, within BACOVA_00901at 32.500 kb on + strand, within BACOVA_00901at 32.561 kb on + strand, within BACOVA_00901at 32.561 kb on + strand, within BACOVA_00901at 32.561 kb on + strand, within BACOVA_00901at 32.561 kb on + strand, within BACOVA_00901at 32.562 kb on - strand, within BACOVA_00901at 32.562 kb on - strand, within BACOVA_00901at 32.563 kb on + strand, within BACOVA_00901at 32.564 kb on - strand, within BACOVA_00901at 32.564 kb on - strand, within BACOVA_00901at 32.630 kb on - strand, within BACOVA_00901at 32.645 kb on - strand, within BACOVA_00901at 32.720 kb on - strand, within BACOVA_00901at 32.722 kb on + strand, within BACOVA_00901at 32.723 kb on - strand, within BACOVA_00901at 32.729 kb on + strand, within BACOVA_00901at 32.729 kb on + strand, within BACOVA_00901at 32.729 kb on + strand, within BACOVA_00901at 32.729 kb on + strand, within BACOVA_00901at 32.744 kb on + strand, within BACOVA_00901at 32.744 kb on + strand, within BACOVA_00901at 32.797 kb on + strand, within BACOVA_00901at 32.812 kb on - strand, within BACOVA_00901at 32.812 kb on - strand, within BACOVA_00901at 32.818 kb on + strand, within BACOVA_00901at 32.819 kb on - strand, within BACOVA_00901at 32.914 kb on + strand, within BACOVA_00901at 32.915 kb on - strand, within BACOVA_00901at 32.921 kb on + strand, within BACOVA_00901at 32.921 kb on + strand, within BACOVA_00901at 32.921 kb on + strand, within BACOVA_00901at 32.921 kb on + strand, within BACOVA_00901at 32.922 kb on - strand, within BACOVA_00901

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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30,830 + +0.0
30,831 - +1.9
30,831 - -0.1
30,862 - -0.1
30,865 - +0.1
30,869 + -0.0
30,903 + +0.3
30,949 - BACOVA_00900 0.11 -0.1
30,949 - BACOVA_00900 0.11 +0.7
30,963 + BACOVA_00900 0.13 +0.9
30,975 - BACOVA_00900 0.14 -0.6
31,023 + BACOVA_00900 0.20 -0.5
31,044 + BACOVA_00900 0.22 +0.3
31,045 - BACOVA_00900 0.22 +0.1
31,045 - BACOVA_00900 0.22 -0.0
31,057 - BACOVA_00900 0.24 +0.1
31,062 + BACOVA_00900 0.24 -0.2
31,063 - BACOVA_00900 0.24 -0.3
31,085 + BACOVA_00900 0.27 +0.5
31,086 - BACOVA_00900 0.27 -0.0
31,146 - BACOVA_00900 0.34 +1.2
31,146 - BACOVA_00900 0.34 -0.4
31,172 + BACOVA_00900 0.37 -0.3
31,179 + BACOVA_00900 0.38 +0.1
31,315 + BACOVA_00900 0.53 +0.5
31,374 - BACOVA_00900 0.60 -0.0
31,401 - BACOVA_00900 0.63 -1.3
31,411 + BACOVA_00900 0.64 -0.3
31,412 - BACOVA_00900 0.65 +0.1
31,412 - BACOVA_00900 0.65 +0.1
31,412 - BACOVA_00900 0.65 -1.8
31,424 + BACOVA_00900 0.66 +0.1
31,454 + BACOVA_00900 0.69 +1.2
31,455 - BACOVA_00900 0.70 +0.2
31,485 + BACOVA_00900 0.73 +0.8
31,560 + BACOVA_00900 0.82 +0.2
31,610 + BACOVA_00900 0.87 -0.4
31,610 + BACOVA_00900 0.87 -0.4
31,661 + -0.4
31,662 - +0.1
31,662 - +0.1
31,695 + +0.1
31,698 + +2.1
31,699 - +0.0
31,726 + -0.1
31,727 - -1.0
31,730 + +0.2
31,731 - +0.6
31,747 + +0.2
31,749 + +0.6
31,771 + +0.2
31,813 + BACOVA_00902 0.11 +0.1
31,814 - BACOVA_00902 0.11 -0.8
31,817 + BACOVA_00902 0.14 -0.9
31,878 + -0.0
31,878 + +0.4
31,987 - +0.6
31,990 + -0.3
31,990 + +1.2
32,067 + +1.1
32,149 + BACOVA_00901 0.11 -0.3
32,150 - BACOVA_00901 0.11 +0.2
32,154 - BACOVA_00901 0.11 -0.1
32,186 + BACOVA_00901 0.12 +1.0
32,187 - BACOVA_00901 0.12 +0.4
32,187 - BACOVA_00901 0.12 +0.2
32,187 - BACOVA_00901 0.12 +0.1
32,190 - BACOVA_00901 0.12 -0.1
32,205 + BACOVA_00901 0.13 +0.6
32,311 + BACOVA_00901 0.17 +0.2
32,314 + BACOVA_00901 0.17 -0.7
32,333 + BACOVA_00901 0.18 +0.5
32,384 + BACOVA_00901 0.20 +0.7
32,385 - BACOVA_00901 0.20 +0.3
32,385 - BACOVA_00901 0.20 +0.4
32,386 + BACOVA_00901 0.20 +1.2
32,387 - BACOVA_00901 0.20 -0.1
32,414 + BACOVA_00901 0.21 -0.1
32,417 - BACOVA_00901 0.21 -1.3
32,495 + BACOVA_00901 0.24 -0.7
32,496 - BACOVA_00901 0.24 +0.5
32,496 - BACOVA_00901 0.24 -0.3
32,500 + BACOVA_00901 0.24 -0.2
32,561 + BACOVA_00901 0.26 +0.5
32,561 + BACOVA_00901 0.26 +0.2
32,561 + BACOVA_00901 0.26 -0.3
32,561 + BACOVA_00901 0.26 +0.0
32,562 - BACOVA_00901 0.26 +1.1
32,562 - BACOVA_00901 0.26 -0.1
32,563 + BACOVA_00901 0.26 -0.9
32,564 - BACOVA_00901 0.26 +0.4
32,564 - BACOVA_00901 0.26 +0.4
32,630 - BACOVA_00901 0.29 -0.8
32,645 - BACOVA_00901 0.29 +1.1
32,720 - BACOVA_00901 0.32 -1.3
32,722 + BACOVA_00901 0.32 -0.1
32,723 - BACOVA_00901 0.32 -0.2
32,729 + BACOVA_00901 0.33 -1.1
32,729 + BACOVA_00901 0.33 -0.4
32,729 + BACOVA_00901 0.33 -0.3
32,729 + BACOVA_00901 0.33 -0.3
32,744 + BACOVA_00901 0.33 -0.2
32,744 + BACOVA_00901 0.33 +0.9
32,797 + BACOVA_00901 0.35 +0.4
32,812 - BACOVA_00901 0.36 +0.6
32,812 - BACOVA_00901 0.36 +0.2
32,818 + BACOVA_00901 0.36 +1.1
32,819 - BACOVA_00901 0.36 -0.1
32,914 + BACOVA_00901 0.40 +0.3
32,915 - BACOVA_00901 0.40 +0.5
32,921 + BACOVA_00901 0.40 +0.3
32,921 + BACOVA_00901 0.40 -0.7
32,921 + BACOVA_00901 0.40 +0.6
32,921 + BACOVA_00901 0.40 +0.3
32,922 - BACOVA_00901 0.40 +0.0

Or see this region's nucleotide sequence