Experiment: Columbia 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00580 and BACOVA_00581 are separated by 137 nucleotides BACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides
BACOVA_00580: BACOVA_00580 - hypothetical protein, at 14,697 to 15,056
_00580
BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700
_00581
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
Position (kb) 15
16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.893 kb on - strand, within BACOVA_00580 at 14.919 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.975 kb on + strand, within BACOVA_00580 at 15.026 kb on - strand at 15.032 kb on - strand at 15.242 kb on + strand at 15.269 kb on - strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.271 kb on - strand, within BACOVA_00581 at 15.300 kb on + strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.304 kb on + strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.517 kb on + strand, within BACOVA_00581 at 15.522 kb on + strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.530 kb on - strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.699 kb on - strand at 15.763 kb on - strand at 15.766 kb on - strand at 15.778 kb on - strand at 15.806 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.827 kb on - strand at 15.830 kb on + strand at 15.830 kb on + strand at 15.831 kb on - strand at 15.832 kb on + strand at 15.833 kb on - strand at 15.833 kb on - strand at 15.837 kb on + strand at 15.846 kb on + strand at 15.847 kb on - strand at 15.952 kb on - strand at 15.952 kb on - strand at 15.954 kb on + strand at 15.956 kb on + strand at 16.012 kb on + strand at 16.017 kb on + strand at 16.018 kb on - strand at 16.022 kb on - strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.054 kb on + strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.096 kb on + strand, within BACOVA_00582 at 16.097 kb on - strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.177 kb on + strand, within BACOVA_00582 at 16.191 kb on + strand, within BACOVA_00582 at 16.192 kb on - strand, within BACOVA_00582 at 16.325 kb on - strand, within BACOVA_00582 at 16.426 kb on + strand, within BACOVA_00582 at 16.542 kb on + strand, within BACOVA_00582 at 16.543 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.628 kb on + strand, within BACOVA_00582 at 16.691 kb on + strand, within BACOVA_00582 at 16.769 kb on - strand, within BACOVA_00582 at 16.836 kb on + strand, within BACOVA_00582 at 16.945 kb on + strand, within BACOVA_00582 at 17.055 kb on + strand, within BACOVA_00582 at 17.065 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.102 kb on - strand, within BACOVA_00582 at 17.103 kb on + strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.231 kb on + strand, within BACOVA_00582 at 17.238 kb on + strand, within BACOVA_00582 at 17.239 kb on - strand, within BACOVA_00582 at 17.244 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.258 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.312 kb on + strand, within BACOVA_00582 at 17.352 kb on - strand, within BACOVA_00582 at 17.397 kb on + strand, within BACOVA_00582 at 17.398 kb on - strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.418 kb on - strand, within BACOVA_00582 at 17.436 kb on + strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.475 kb on - strand, within BACOVA_00582 at 17.506 kb on - strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media remove 14,893 - BACOVA_00580 0.54 -0.7 14,919 - BACOVA_00580 0.62 -0.8 14,945 - BACOVA_00580 0.69 -0.2 14,945 - BACOVA_00580 0.69 -0.1 14,975 + BACOVA_00580 0.77 +0.1 15,026 - +0.9 15,032 - +0.9 15,242 + -0.1 15,269 - BACOVA_00581 0.15 -0.3 15,270 + BACOVA_00581 0.15 -0.7 15,270 + BACOVA_00581 0.15 +0.6 15,270 + BACOVA_00581 0.15 +0.4 15,271 - BACOVA_00581 0.15 +0.5 15,300 + BACOVA_00581 0.21 -0.1 15,301 - BACOVA_00581 0.21 -1.1 15,301 - BACOVA_00581 0.21 -0.9 15,304 + BACOVA_00581 0.22 -0.7 15,473 - BACOVA_00581 0.55 -1.7 15,473 - BACOVA_00581 0.55 +1.5 15,497 + BACOVA_00581 0.60 -1.2 15,497 + BACOVA_00581 0.60 +1.1 15,497 + BACOVA_00581 0.60 +0.9 15,497 + BACOVA_00581 0.60 -0.2 15,498 - BACOVA_00581 0.60 +1.2 15,498 - BACOVA_00581 0.60 -1.0 15,517 + BACOVA_00581 0.64 -0.9 15,522 + BACOVA_00581 0.65 +0.3 15,523 - BACOVA_00581 0.65 +0.2 15,523 - BACOVA_00581 0.65 +1.1 15,523 - BACOVA_00581 0.65 -0.5 15,530 - BACOVA_00581 0.66 +0.4 15,588 + BACOVA_00581 0.78 +0.3 15,588 + BACOVA_00581 0.78 -0.0 15,699 - +0.8 15,763 - +1.3 15,766 - -0.5 15,778 - -0.7 15,806 + -0.9 15,826 + +0.6 15,826 + +0.5 15,826 + -0.7 15,827 - +0.5 15,830 + +0.4 15,830 + -1.4 15,831 - -0.2 15,832 + -0.2 15,833 - +0.1 15,833 - -0.1 15,837 + -0.4 15,846 + -0.9 15,847 - +0.5 15,952 - +0.9 15,952 - +0.7 15,954 + +1.5 15,956 + -0.1 16,012 + -1.3 16,017 + -1.2 16,018 - +0.4 16,022 - +0.0 16,040 + -0.3 16,040 + -0.2 16,040 + -1.7 16,041 - +0.4 16,041 - -1.1 16,041 - +0.6 16,041 - -0.3 16,054 + BACOVA_00582 0.10 +0.5 16,055 - BACOVA_00582 0.10 -0.7 16,055 - BACOVA_00582 0.10 -0.4 16,096 + BACOVA_00582 0.12 +0.9 16,097 - BACOVA_00582 0.12 -0.8 16,114 + BACOVA_00582 0.13 +0.4 16,114 + BACOVA_00582 0.13 +0.3 16,177 + BACOVA_00582 0.15 +0.6 16,191 + BACOVA_00582 0.16 -0.1 16,192 - BACOVA_00582 0.16 -0.9 16,325 - BACOVA_00582 0.22 +0.3 16,426 + BACOVA_00582 0.27 -1.5 16,542 + BACOVA_00582 0.32 -0.7 16,543 - BACOVA_00582 0.32 +0.4 16,604 - BACOVA_00582 0.34 -0.4 16,604 - BACOVA_00582 0.34 -0.3 16,626 + BACOVA_00582 0.35 -0.5 16,626 + BACOVA_00582 0.35 -0.7 16,628 + BACOVA_00582 0.35 +0.5 16,691 + BACOVA_00582 0.38 +0.9 16,769 - BACOVA_00582 0.42 +0.1 16,836 + BACOVA_00582 0.45 -0.3 16,945 + BACOVA_00582 0.49 -0.1 17,055 + BACOVA_00582 0.54 +0.9 17,065 + BACOVA_00582 0.55 -0.7 17,101 + BACOVA_00582 0.56 +0.9 17,101 + BACOVA_00582 0.56 +1.5 17,101 + BACOVA_00582 0.56 -0.9 17,101 + BACOVA_00582 0.56 +0.5 17,101 + BACOVA_00582 0.56 -0.5 17,102 - BACOVA_00582 0.56 +0.9 17,103 + BACOVA_00582 0.56 -0.4 17,104 - BACOVA_00582 0.57 -0.7 17,104 - BACOVA_00582 0.57 -0.1 17,231 + BACOVA_00582 0.62 +0.9 17,238 + BACOVA_00582 0.62 +0.4 17,239 - BACOVA_00582 0.63 -0.7 17,244 - BACOVA_00582 0.63 -0.5 17,251 - BACOVA_00582 0.63 +0.3 17,251 - BACOVA_00582 0.63 +1.9 17,258 - BACOVA_00582 0.63 +0.4 17,307 - BACOVA_00582 0.66 +0.3 17,307 - BACOVA_00582 0.66 -0.5 17,307 - BACOVA_00582 0.66 +1.9 17,312 + BACOVA_00582 0.66 -0.3 17,352 - BACOVA_00582 0.68 +1.3 17,397 + BACOVA_00582 0.69 -0.4 17,398 - BACOVA_00582 0.70 -1.6 17,413 + BACOVA_00582 0.70 +0.4 17,413 + BACOVA_00582 0.70 +0.1 17,418 - BACOVA_00582 0.70 -0.1 17,436 + BACOVA_00582 0.71 -0.1 17,437 - BACOVA_00582 0.71 -0.7 17,437 - BACOVA_00582 0.71 -0.7 17,475 - BACOVA_00582 0.73 -2.6 17,506 - BACOVA_00582 0.74 -2.7 17,525 + BACOVA_00582 0.75 -0.6 17,525 + BACOVA_00582 0.75 +0.2 17,525 + BACOVA_00582 0.75 +2.9 17,526 - BACOVA_00582 0.75 +1.2 17,526 - BACOVA_00582 0.75 -0.2 17,668 + BACOVA_00582 0.81 +1.2 17,669 - BACOVA_00582 0.82 -0.6 17,669 - BACOVA_00582 0.82 -0.8 17,669 - BACOVA_00582 0.82 -0.1 17,669 - BACOVA_00582 0.82 +0.2 17,719 + BACOVA_00582 0.84 +0.4 17,724 + BACOVA_00582 0.84 +0.0 17,783 - BACOVA_00582 0.87 -0.0 17,786 - BACOVA_00582 0.87 -0.5 17,844 - BACOVA_00582 0.89 -0.4 17,848 + BACOVA_00582 0.89 -0.5 17,849 - BACOVA_00582 0.90 -1.1 17,873 - -1.4 17,877 + +0.0 17,877 + -0.3 17,885 + -0.3 17,923 + +0.5 17,923 + -0.6 17,923 + -0.1 17,923 + +1.7 17,943 + +0.2 17,984 - +0.9 18,017 - +0.9 18,083 + +0.4 18,087 + +1.3 18,087 + -0.0 18,088 - -0.4 18,090 - -0.1 18,107 - -0.7 18,107 - -0.3 18,160 + BACOVA_00583 0.12 -0.9 18,179 + BACOVA_00583 0.16 -0.7 18,199 + BACOVA_00583 0.19 +0.7 18,219 + BACOVA_00583 0.23 +0.6 18,243 + BACOVA_00583 0.27 +0.3 18,244 - BACOVA_00583 0.27 +0.0 18,297 - BACOVA_00583 0.36 +1.1 18,297 - BACOVA_00583 0.36 +0.3 18,297 - BACOVA_00583 0.36 +0.3 18,397 - BACOVA_00583 0.54 -0.2 18,488 + BACOVA_00583 0.69 -0.9 18,517 + BACOVA_00583 0.75 -0.5 18,553 + BACOVA_00583 0.81 +0.4 18,554 - BACOVA_00583 0.81 -0.2 18,557 + BACOVA_00583 0.82 -0.1 18,575 + BACOVA_00583 0.85 +0.3 18,576 - BACOVA_00583 0.85 -1.1 18,588 - BACOVA_00583 0.87 -0.3 18,588 - BACOVA_00583 0.87 -0.1 18,622 + -2.1 18,623 - -0.4 18,626 + +1.7 18,667 - -1.2 18,667 - -1.4 18,667 - -2.2 18,705 + -0.7 18,705 + +2.9 18,734 + -2.1 18,743 - -1.5 18,870 + BACOVA_00584 0.21 -0.4 18,870 + BACOVA_00584 0.21 -0.1 18,870 + BACOVA_00584 0.21 -0.7 18,912 + BACOVA_00584 0.24 -0.5 18,928 - BACOVA_00584 0.26 -0.3 18,928 - BACOVA_00584 0.26 -1.1 18,996 + BACOVA_00584 0.32 -0.2 19,001 + BACOVA_00584 0.33 -0.3 19,002 - BACOVA_00584 0.33 +0.1 19,057 - BACOVA_00584 0.38 -0.5 19,071 - BACOVA_00584 0.39 +0.5 19,071 - BACOVA_00584 0.39 -1.2
Or see this region's nucleotide sequence