Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00383

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00380 and BACOVA_00381 are separated by 17 nucleotidesBACOVA_00381 and BACOVA_00382 overlap by 22 nucleotidesBACOVA_00382 and BACOVA_00383 are separated by 73 nucleotidesBACOVA_00383 and BACOVA_00384 overlap by 4 nucleotidesBACOVA_00384 and BACOVA_00385 are separated by 86 nucleotides BACOVA_00380: BACOVA_00380 - putative thioredoxin, at 5,692 to 6,156 _00380 BACOVA_00381: BACOVA_00381 - putative thioredoxin, at 6,174 to 6,473 _00381 BACOVA_00382: BACOVA_00382 - hypothetical protein, at 6,452 to 6,568 _00382 BACOVA_00383: BACOVA_00383 - hypothetical protein, at 6,642 to 7,769 _00383 BACOVA_00384: BACOVA_00384 - hypothetical protein, at 7,766 to 7,948 _00384 BACOVA_00385: BACOVA_00385 - hypothetical protein, at 8,035 to 10,191 _00385 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.649 kb on - strandat 5.655 kb on - strandat 5.655 kb on - strandat 5.693 kb on + strandat 5.786 kb on - strand, within BACOVA_00380at 5.811 kb on + strand, within BACOVA_00380at 5.812 kb on - strand, within BACOVA_00380at 5.812 kb on - strand, within BACOVA_00380at 5.855 kb on + strand, within BACOVA_00380at 5.877 kb on - strand, within BACOVA_00380at 5.901 kb on + strand, within BACOVA_00380at 5.942 kb on - strand, within BACOVA_00380at 5.942 kb on - strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.962 kb on - strand, within BACOVA_00380at 5.964 kb on + strand, within BACOVA_00380at 5.972 kb on + strand, within BACOVA_00380at 5.973 kb on - strand, within BACOVA_00380at 6.022 kb on - strand, within BACOVA_00380at 6.022 kb on - strand, within BACOVA_00380at 6.078 kb on + strand, within BACOVA_00380at 6.088 kb on - strand, within BACOVA_00380at 6.104 kb on + strand, within BACOVA_00380at 6.107 kb on - strand, within BACOVA_00380at 6.107 kb on - strand, within BACOVA_00380at 6.133 kb on + strandat 6.143 kb on - strandat 6.145 kb on + strandat 6.168 kb on - strandat 6.179 kb on + strandat 6.180 kb on - strandat 6.181 kb on + strandat 6.182 kb on - strandat 6.182 kb on - strandat 6.195 kb on - strandat 6.265 kb on - strand, within BACOVA_00381at 6.267 kb on - strand, within BACOVA_00381at 6.285 kb on + strand, within BACOVA_00381at 6.297 kb on - strand, within BACOVA_00381at 6.297 kb on - strand, within BACOVA_00381at 6.328 kb on - strand, within BACOVA_00381at 6.367 kb on - strand, within BACOVA_00381at 6.430 kb on - strand, within BACOVA_00381at 6.451 kb on - strandat 6.454 kb on - strandat 6.530 kb on + strand, within BACOVA_00382at 6.538 kb on + strand, within BACOVA_00382at 6.540 kb on + strand, within BACOVA_00382at 6.574 kb on - strandat 6.574 kb on - strandat 6.574 kb on - strandat 6.582 kb on + strandat 6.582 kb on + strandat 6.582 kb on + strandat 6.626 kb on + strandat 6.824 kb on + strand, within BACOVA_00383at 6.886 kb on - strand, within BACOVA_00383at 6.896 kb on - strand, within BACOVA_00383at 6.910 kb on - strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.928 kb on - strand, within BACOVA_00383at 6.929 kb on + strand, within BACOVA_00383at 6.932 kb on - strand, within BACOVA_00383at 6.978 kb on + strand, within BACOVA_00383at 6.999 kb on - strand, within BACOVA_00383at 7.003 kb on - strand, within BACOVA_00383at 7.003 kb on - strand, within BACOVA_00383at 7.051 kb on - strand, within BACOVA_00383at 7.051 kb on - strand, within BACOVA_00383at 7.061 kb on - strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.263 kb on + strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.342 kb on + strand, within BACOVA_00383at 7.343 kb on - strand, within BACOVA_00383at 7.414 kb on + strand, within BACOVA_00383at 7.451 kb on + strand, within BACOVA_00383at 7.520 kb on - strand, within BACOVA_00383at 7.535 kb on + strand, within BACOVA_00383at 7.535 kb on + strand, within BACOVA_00383at 7.536 kb on - strand, within BACOVA_00383at 7.585 kb on + strand, within BACOVA_00383at 7.586 kb on - strand, within BACOVA_00383at 7.670 kb on + strandat 7.751 kb on + strandat 7.755 kb on + strandat 7.756 kb on - strandat 7.818 kb on - strand, within BACOVA_00384at 7.818 kb on - strand, within BACOVA_00384at 7.820 kb on + strand, within BACOVA_00384at 7.840 kb on + strand, within BACOVA_00384at 7.840 kb on + strand, within BACOVA_00384at 7.849 kb on + strand, within BACOVA_00384at 7.850 kb on - strand, within BACOVA_00384at 7.850 kb on - strand, within BACOVA_00384at 7.899 kb on + strand, within BACOVA_00384at 7.900 kb on - strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.927 kb on + strand, within BACOVA_00384at 7.944 kb on + strandat 7.979 kb on + strandat 8.036 kb on + strandat 8.036 kb on + strandat 8.062 kb on - strandat 8.101 kb on - strandat 8.102 kb on + strandat 8.245 kb on - strandat 8.248 kb on - strandat 8.257 kb on + strand, within BACOVA_00385at 8.316 kb on + strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.318 kb on + strand, within BACOVA_00385at 8.319 kb on - strand, within BACOVA_00385at 8.320 kb on + strand, within BACOVA_00385at 8.321 kb on - strand, within BACOVA_00385at 8.450 kb on + strand, within BACOVA_00385at 8.451 kb on - strand, within BACOVA_00385at 8.467 kb on - strand, within BACOVA_00385at 8.533 kb on + strand, within BACOVA_00385at 8.539 kb on - strand, within BACOVA_00385at 8.552 kb on + strand, within BACOVA_00385at 8.613 kb on - strand, within BACOVA_00385at 8.620 kb on + strand, within BACOVA_00385at 8.623 kb on + strand, within BACOVA_00385at 8.623 kb on + strand, within BACOVA_00385at 8.648 kb on + strand, within BACOVA_00385at 8.667 kb on + strand, within BACOVA_00385

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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5,649 - +0.7
5,655 - -0.3
5,655 - -0.6
5,693 + -0.6
5,786 - BACOVA_00380 0.20 -0.1
5,811 + BACOVA_00380 0.26 -0.3
5,812 - BACOVA_00380 0.26 +0.1
5,812 - BACOVA_00380 0.26 +1.0
5,855 + BACOVA_00380 0.35 -1.6
5,877 - BACOVA_00380 0.40 +0.5
5,901 + BACOVA_00380 0.45 +2.0
5,942 - BACOVA_00380 0.54 -0.7
5,942 - BACOVA_00380 0.54 +1.0
5,961 + BACOVA_00380 0.58 -1.0
5,961 + BACOVA_00380 0.58 +0.3
5,961 + BACOVA_00380 0.58 -0.0
5,962 - BACOVA_00380 0.58 +0.5
5,964 + BACOVA_00380 0.58 -0.8
5,972 + BACOVA_00380 0.60 +1.3
5,973 - BACOVA_00380 0.60 -0.0
6,022 - BACOVA_00380 0.71 -0.6
6,022 - BACOVA_00380 0.71 +0.3
6,078 + BACOVA_00380 0.83 -0.0
6,088 - BACOVA_00380 0.85 +0.1
6,104 + BACOVA_00380 0.89 +1.0
6,107 - BACOVA_00380 0.89 +0.1
6,107 - BACOVA_00380 0.89 +0.1
6,133 + -2.8
6,143 - -0.7
6,145 + -0.4
6,168 - +0.7
6,179 + +0.8
6,180 - +2.3
6,181 + -0.1
6,182 - -0.4
6,182 - +0.3
6,195 - -0.3
6,265 - BACOVA_00381 0.30 +0.5
6,267 - BACOVA_00381 0.31 -0.0
6,285 + BACOVA_00381 0.37 +0.5
6,297 - BACOVA_00381 0.41 +0.9
6,297 - BACOVA_00381 0.41 +0.2
6,328 - BACOVA_00381 0.51 +2.4
6,367 - BACOVA_00381 0.64 +1.3
6,430 - BACOVA_00381 0.85 +0.8
6,451 - +0.2
6,454 - +0.7
6,530 + BACOVA_00382 0.67 -1.5
6,538 + BACOVA_00382 0.74 +1.4
6,540 + BACOVA_00382 0.75 -0.3
6,574 - +0.2
6,574 - +0.8
6,574 - +0.5
6,582 + +0.3
6,582 + -0.4
6,582 + +0.3
6,626 + -0.0
6,824 + BACOVA_00383 0.16 -0.0
6,886 - BACOVA_00383 0.22 +0.7
6,896 - BACOVA_00383 0.23 -0.6
6,910 - BACOVA_00383 0.24 +0.6
6,924 + BACOVA_00383 0.25 +0.6
6,924 + BACOVA_00383 0.25 +0.1
6,924 + BACOVA_00383 0.25 +0.8
6,925 - BACOVA_00383 0.25 +0.5
6,925 - BACOVA_00383 0.25 +0.3
6,925 - BACOVA_00383 0.25 +0.8
6,925 - BACOVA_00383 0.25 +0.1
6,928 - BACOVA_00383 0.25 +1.4
6,929 + BACOVA_00383 0.25 -0.7
6,932 - BACOVA_00383 0.26 -0.7
6,978 + BACOVA_00383 0.30 +0.6
6,999 - BACOVA_00383 0.32 -0.0
7,003 - BACOVA_00383 0.32 -0.0
7,003 - BACOVA_00383 0.32 +0.5
7,051 - BACOVA_00383 0.36 +0.2
7,051 - BACOVA_00383 0.36 +0.3
7,061 - BACOVA_00383 0.37 -0.1
7,190 + BACOVA_00383 0.49 +0.2
7,190 + BACOVA_00383 0.49 -0.2
7,191 - BACOVA_00383 0.49 +2.0
7,191 - BACOVA_00383 0.49 -0.3
7,263 + BACOVA_00383 0.55 +1.0
7,264 - BACOVA_00383 0.55 -0.3
7,264 - BACOVA_00383 0.55 +0.6
7,275 + BACOVA_00383 0.56 +0.6
7,275 + BACOVA_00383 0.56 +0.1
7,275 + BACOVA_00383 0.56 -1.9
7,276 - BACOVA_00383 0.56 -0.9
7,276 - BACOVA_00383 0.56 -0.3
7,277 + BACOVA_00383 0.56 +1.0
7,277 + BACOVA_00383 0.56 +1.4
7,277 + BACOVA_00383 0.56 -3.7
7,278 - BACOVA_00383 0.56 +1.6
7,278 - BACOVA_00383 0.56 -1.3
7,342 + BACOVA_00383 0.62 -0.0
7,343 - BACOVA_00383 0.62 +0.4
7,414 + BACOVA_00383 0.68 +0.7
7,451 + BACOVA_00383 0.72 +1.5
7,520 - BACOVA_00383 0.78 +0.2
7,535 + BACOVA_00383 0.79 -0.3
7,535 + BACOVA_00383 0.79 +0.5
7,536 - BACOVA_00383 0.79 +0.4
7,585 + BACOVA_00383 0.84 +0.3
7,586 - BACOVA_00383 0.84 -2.0
7,670 + -0.2
7,751 + -0.2
7,755 + +0.4
7,756 - +0.4
7,818 - BACOVA_00384 0.28 -0.4
7,818 - BACOVA_00384 0.28 +0.6
7,820 + BACOVA_00384 0.30 +0.8
7,840 + BACOVA_00384 0.40 -0.6
7,840 + BACOVA_00384 0.40 -1.1
7,849 + BACOVA_00384 0.45 +0.0
7,850 - BACOVA_00384 0.46 +1.0
7,850 - BACOVA_00384 0.46 -1.0
7,899 + BACOVA_00384 0.73 -0.0
7,900 - BACOVA_00384 0.73 -0.9
7,925 + BACOVA_00384 0.87 -0.0
7,925 + BACOVA_00384 0.87 -0.7
7,925 + BACOVA_00384 0.87 -0.3
7,925 + BACOVA_00384 0.87 +0.2
7,925 + BACOVA_00384 0.87 -0.6
7,926 - BACOVA_00384 0.87 +0.7
7,926 - BACOVA_00384 0.87 +0.7
7,926 - BACOVA_00384 0.87 -0.9
7,926 - BACOVA_00384 0.87 -1.5
7,927 + BACOVA_00384 0.88 -0.2
7,944 + -1.3
7,979 + -1.0
8,036 + -1.1
8,036 + +0.4
8,062 - -0.6
8,101 - +0.7
8,102 + -0.2
8,245 - -1.0
8,248 - -0.3
8,257 + BACOVA_00385 0.10 +0.4
8,316 + BACOVA_00385 0.13 -0.6
8,317 - BACOVA_00385 0.13 +1.2
8,317 - BACOVA_00385 0.13 +0.5
8,317 - BACOVA_00385 0.13 -1.9
8,318 + BACOVA_00385 0.13 +1.6
8,319 - BACOVA_00385 0.13 +0.2
8,320 + BACOVA_00385 0.13 +0.7
8,321 - BACOVA_00385 0.13 -2.0
8,450 + BACOVA_00385 0.19 -0.6
8,451 - BACOVA_00385 0.19 -0.1
8,467 - BACOVA_00385 0.20 -0.3
8,533 + BACOVA_00385 0.23 +0.1
8,539 - BACOVA_00385 0.23 +1.4
8,552 + BACOVA_00385 0.24 -0.3
8,613 - BACOVA_00385 0.27 +1.0
8,620 + BACOVA_00385 0.27 -0.2
8,623 + BACOVA_00385 0.27 -1.5
8,623 + BACOVA_00385 0.27 -0.4
8,648 + BACOVA_00385 0.28 -0.8
8,667 + BACOVA_00385 0.29 -0.9

Or see this region's nucleotide sequence