Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03578 and BACOVA_03579 are separated by 70 nucleotides BACOVA_03579 and BACOVA_03580 are separated by 16 nucleotides
BACOVA_03578: BACOVA_03578 - TonB-linked outer membrane protein, SusC/RagA family, at 364,908 to 368,186
_03578
BACOVA_03579: BACOVA_03579 - SusD family protein, at 368,257 to 370,272
_03579
BACOVA_03580: BACOVA_03580 - hypothetical protein, at 370,289 to 371,962
_03580
Position (kb) 368
369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.273 kb on + strand, within BACOVA_03578 at 367.298 kb on + strand, within BACOVA_03578 at 367.321 kb on + strand, within BACOVA_03578 at 367.377 kb on - strand, within BACOVA_03578 at 367.377 kb on - strand, within BACOVA_03578 at 367.381 kb on + strand, within BACOVA_03578 at 367.381 kb on + strand, within BACOVA_03578 at 367.404 kb on + strand, within BACOVA_03578 at 367.445 kb on + strand, within BACOVA_03578 at 367.566 kb on - strand, within BACOVA_03578 at 367.598 kb on + strand, within BACOVA_03578 at 367.599 kb on - strand, within BACOVA_03578 at 367.615 kb on + strand, within BACOVA_03578 at 367.628 kb on + strand, within BACOVA_03578 at 367.628 kb on + strand, within BACOVA_03578 at 367.710 kb on + strand, within BACOVA_03578 at 367.713 kb on - strand, within BACOVA_03578 at 367.721 kb on + strand, within BACOVA_03578 at 367.752 kb on - strand, within BACOVA_03578 at 367.755 kb on + strand, within BACOVA_03578 at 367.758 kb on - strand, within BACOVA_03578 at 367.758 kb on - strand, within BACOVA_03578 at 367.760 kb on + strand, within BACOVA_03578 at 367.760 kb on + strand, within BACOVA_03578 at 367.828 kb on + strand, within BACOVA_03578 at 367.828 kb on + strand, within BACOVA_03578 at 367.828 kb on + strand, within BACOVA_03578 at 367.829 kb on - strand, within BACOVA_03578 at 367.833 kb on + strand, within BACOVA_03578 at 367.834 kb on - strand, within BACOVA_03578 at 367.834 kb on - strand, within BACOVA_03578 at 367.834 kb on - strand, within BACOVA_03578 at 367.839 kb on - strand, within BACOVA_03578 at 367.898 kb on + strand at 367.899 kb on - strand at 367.899 kb on - strand at 367.959 kb on - strand at 367.979 kb on + strand at 367.979 kb on + strand at 367.980 kb on - strand at 368.032 kb on - strand at 368.037 kb on - strand at 368.067 kb on + strand at 368.105 kb on + strand at 368.105 kb on + strand at 368.157 kb on + strand at 368.158 kb on - strand at 368.161 kb on + strand at 368.162 kb on - strand at 368.171 kb on + strand at 368.204 kb on + strand at 368.205 kb on - strand at 368.229 kb on - strand at 368.229 kb on - strand at 368.314 kb on - strand at 368.351 kb on + strand at 368.352 kb on - strand at 368.352 kb on - strand at 368.352 kb on - strand at 368.354 kb on - strand at 368.374 kb on + strand at 368.375 kb on - strand at 368.375 kb on - strand at 368.375 kb on - strand at 368.375 kb on - strand at 368.375 kb on - strand at 368.376 kb on + strand at 368.376 kb on + strand at 368.376 kb on + strand at 368.377 kb on - strand at 368.377 kb on - strand at 368.377 kb on - strand at 368.377 kb on - strand at 368.378 kb on + strand at 368.378 kb on + strand at 368.379 kb on - strand at 368.379 kb on - strand at 368.379 kb on - strand at 368.379 kb on - strand at 368.381 kb on - strand at 368.381 kb on - strand at 368.461 kb on - strand, within BACOVA_03579 at 368.539 kb on + strand, within BACOVA_03579 at 368.562 kb on + strand, within BACOVA_03579 at 368.565 kb on + strand, within BACOVA_03579 at 368.566 kb on - strand, within BACOVA_03579 at 368.570 kb on + strand, within BACOVA_03579 at 368.571 kb on - strand, within BACOVA_03579 at 368.571 kb on - strand, within BACOVA_03579 at 368.571 kb on - strand, within BACOVA_03579 at 368.579 kb on + strand, within BACOVA_03579 at 368.579 kb on + strand, within BACOVA_03579 at 368.579 kb on + strand, within BACOVA_03579 at 368.580 kb on - strand, within BACOVA_03579 at 368.633 kb on - strand, within BACOVA_03579 at 368.636 kb on + strand, within BACOVA_03579 at 368.648 kb on + strand, within BACOVA_03579 at 368.648 kb on + strand, within BACOVA_03579 at 368.704 kb on + strand, within BACOVA_03579 at 368.705 kb on - strand, within BACOVA_03579 at 368.743 kb on + strand, within BACOVA_03579 at 368.744 kb on - strand, within BACOVA_03579 at 368.745 kb on + strand, within BACOVA_03579 at 368.779 kb on + strand, within BACOVA_03579 at 368.780 kb on - strand, within BACOVA_03579 at 368.780 kb on - strand, within BACOVA_03579 at 368.786 kb on + strand, within BACOVA_03579 at 368.812 kb on + strand, within BACOVA_03579 at 368.813 kb on - strand, within BACOVA_03579 at 368.813 kb on - strand, within BACOVA_03579 at 368.839 kb on + strand, within BACOVA_03579 at 368.841 kb on + strand, within BACOVA_03579 at 368.841 kb on + strand, within BACOVA_03579 at 368.847 kb on - strand, within BACOVA_03579 at 369.020 kb on - strand, within BACOVA_03579 at 369.022 kb on + strand, within BACOVA_03579 at 369.140 kb on - strand, within BACOVA_03579 at 369.142 kb on - strand, within BACOVA_03579 at 369.231 kb on + strand, within BACOVA_03579 at 369.232 kb on - strand, within BACOVA_03579 at 369.263 kb on - strand, within BACOVA_03579 at 369.271 kb on - strand, within BACOVA_03579 at 369.274 kb on - strand, within BACOVA_03579 at 369.274 kb on - strand, within BACOVA_03579 at 369.281 kb on - strand, within BACOVA_03579 at 369.281 kb on - strand, within BACOVA_03579 at 369.281 kb on - strand, within BACOVA_03579 at 369.375 kb on + strand, within BACOVA_03579 at 369.375 kb on + strand, within BACOVA_03579 at 369.435 kb on + strand, within BACOVA_03579 at 369.436 kb on - strand, within BACOVA_03579 at 369.440 kb on - strand, within BACOVA_03579 at 369.440 kb on - strand, within BACOVA_03579 at 369.474 kb on + strand, within BACOVA_03579 at 369.475 kb on - strand, within BACOVA_03579 at 369.475 kb on - strand, within BACOVA_03579 at 369.658 kb on + strand, within BACOVA_03579 at 369.721 kb on - strand, within BACOVA_03579 at 369.792 kb on + strand, within BACOVA_03579 at 369.792 kb on + strand, within BACOVA_03579 at 369.793 kb on - strand, within BACOVA_03579 at 369.799 kb on + strand, within BACOVA_03579 at 369.800 kb on - strand, within BACOVA_03579 at 369.800 kb on - strand, within BACOVA_03579 at 369.806 kb on - strand, within BACOVA_03579 at 369.820 kb on - strand, within BACOVA_03579 at 369.836 kb on - strand, within BACOVA_03579 at 369.870 kb on + strand, within BACOVA_03579 at 369.871 kb on - strand, within BACOVA_03579 at 369.898 kb on + strand, within BACOVA_03579 at 369.906 kb on + strand, within BACOVA_03579 at 369.907 kb on - strand, within BACOVA_03579 at 369.907 kb on - strand, within BACOVA_03579 at 369.919 kb on - strand, within BACOVA_03579 at 369.970 kb on + strand, within BACOVA_03579 at 370.020 kb on + strand, within BACOVA_03579 at 370.023 kb on - strand, within BACOVA_03579 at 370.023 kb on - strand, within BACOVA_03579 at 370.038 kb on + strand, within BACOVA_03579 at 370.042 kb on - strand, within BACOVA_03579 at 370.042 kb on - strand, within BACOVA_03579 at 370.042 kb on - strand, within BACOVA_03579 at 370.045 kb on + strand, within BACOVA_03579 at 370.046 kb on - strand, within BACOVA_03579 at 370.062 kb on + strand, within BACOVA_03579 at 370.062 kb on + strand, within BACOVA_03579 at 370.099 kb on + strand at 370.100 kb on - strand at 370.166 kb on - strand at 370.166 kb on - strand at 370.202 kb on + strand at 370.203 kb on - strand at 370.203 kb on - strand at 370.203 kb on - strand at 370.203 kb on - strand at 370.264 kb on + strand at 370.306 kb on + strand at 370.307 kb on - strand at 370.307 kb on - strand at 370.328 kb on + strand at 370.328 kb on + strand at 370.329 kb on - strand at 370.332 kb on + strand at 370.335 kb on + strand at 370.335 kb on + strand at 370.336 kb on - strand at 370.348 kb on - strand at 370.348 kb on - strand at 370.354 kb on + strand at 370.355 kb on - strand at 370.394 kb on - strand at 370.403 kb on + strand at 370.467 kb on + strand, within BACOVA_03580 at 370.472 kb on + strand, within BACOVA_03580 at 370.548 kb on - strand, within BACOVA_03580 at 370.548 kb on - strand, within BACOVA_03580 at 370.562 kb on - strand, within BACOVA_03580 at 370.576 kb on + strand, within BACOVA_03580 at 370.588 kb on - strand, within BACOVA_03580 at 370.600 kb on + strand, within BACOVA_03580 at 370.600 kb on + strand, within BACOVA_03580 at 370.601 kb on - strand, within BACOVA_03580 at 370.710 kb on - strand, within BACOVA_03580 at 370.747 kb on - strand, within BACOVA_03580 at 370.765 kb on + strand, within BACOVA_03580 at 370.766 kb on - strand, within BACOVA_03580 at 370.772 kb on - strand, within BACOVA_03580 at 370.887 kb on + strand, within BACOVA_03580 at 370.934 kb on + strand, within BACOVA_03580 at 370.954 kb on + strand, within BACOVA_03580 at 370.965 kb on + strand, within BACOVA_03580 at 370.966 kb on - strand, within BACOVA_03580 at 370.976 kb on + strand, within BACOVA_03580 at 370.977 kb on - strand, within BACOVA_03580 at 370.980 kb on + strand, within BACOVA_03580 at 370.980 kb on + strand, within BACOVA_03580 at 370.981 kb on - strand, within BACOVA_03580 at 370.981 kb on - strand, within BACOVA_03580 at 371.053 kb on - strand, within BACOVA_03580 at 371.065 kb on - strand, within BACOVA_03580 at 371.069 kb on - strand, within BACOVA_03580 at 371.100 kb on + strand, within BACOVA_03580 at 371.136 kb on + strand, within BACOVA_03580 at 371.200 kb on + strand, within BACOVA_03580 at 371.201 kb on - strand, within BACOVA_03580 at 371.215 kb on + strand, within BACOVA_03580 at 371.228 kb on - strand, within BACOVA_03580 at 371.228 kb on - strand, within BACOVA_03580 at 371.232 kb on + strand, within BACOVA_03580 at 371.250 kb on + strand, within BACOVA_03580
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 367,273 + BACOVA_03578 0.72 -1.0 367,298 + BACOVA_03578 0.73 +0.4 367,321 + BACOVA_03578 0.74 +0.2 367,377 - BACOVA_03578 0.75 +0.7 367,377 - BACOVA_03578 0.75 -1.1 367,381 + BACOVA_03578 0.75 +0.0 367,381 + BACOVA_03578 0.75 +0.9 367,404 + BACOVA_03578 0.76 -0.9 367,445 + BACOVA_03578 0.77 -1.4 367,566 - BACOVA_03578 0.81 -1.4 367,598 + BACOVA_03578 0.82 -0.3 367,599 - BACOVA_03578 0.82 +1.1 367,615 + BACOVA_03578 0.83 -0.6 367,628 + BACOVA_03578 0.83 -0.1 367,628 + BACOVA_03578 0.83 -0.5 367,710 + BACOVA_03578 0.85 -0.1 367,713 - BACOVA_03578 0.86 +0.8 367,721 + BACOVA_03578 0.86 +0.7 367,752 - BACOVA_03578 0.87 -0.1 367,755 + BACOVA_03578 0.87 -1.1 367,758 - BACOVA_03578 0.87 +1.0 367,758 - BACOVA_03578 0.87 +0.7 367,760 + BACOVA_03578 0.87 +0.5 367,760 + BACOVA_03578 0.87 +0.2 367,828 + BACOVA_03578 0.89 +0.7 367,828 + BACOVA_03578 0.89 -0.5 367,828 + BACOVA_03578 0.89 -0.8 367,829 - BACOVA_03578 0.89 -0.2 367,833 + BACOVA_03578 0.89 +0.1 367,834 - BACOVA_03578 0.89 +0.4 367,834 - BACOVA_03578 0.89 +0.1 367,834 - BACOVA_03578 0.89 +0.9 367,839 - BACOVA_03578 0.89 -0.6 367,898 + +0.5 367,899 - -0.6 367,899 - +0.2 367,959 - +0.2 367,979 + +0.5 367,979 + +1.1 367,980 - -0.2 368,032 - +0.7 368,037 - +0.6 368,067 + -0.9 368,105 + -0.7 368,105 + -1.4 368,157 + -0.4 368,158 - +0.1 368,161 + +1.9 368,162 - -0.2 368,171 + +0.2 368,204 + +0.1 368,205 - -1.1 368,229 - -0.9 368,229 - +0.7 368,314 - +0.2 368,351 + +0.2 368,352 - +0.0 368,352 - -1.3 368,352 - -0.8 368,354 - -0.4 368,374 + -0.6 368,375 - -0.5 368,375 - -0.1 368,375 - -0.8 368,375 - +0.5 368,375 - -1.9 368,376 + +0.2 368,376 + -0.3 368,376 + -0.7 368,377 - -1.0 368,377 - -0.1 368,377 - +0.0 368,377 - -0.3 368,378 + -0.3 368,378 + +0.3 368,379 - +0.5 368,379 - +0.2 368,379 - +1.3 368,379 - -0.4 368,381 - +0.2 368,381 - +0.2 368,461 - BACOVA_03579 0.10 -0.2 368,539 + BACOVA_03579 0.14 +0.3 368,562 + BACOVA_03579 0.15 -0.1 368,565 + BACOVA_03579 0.15 -1.0 368,566 - BACOVA_03579 0.15 +0.8 368,570 + BACOVA_03579 0.16 -0.8 368,571 - BACOVA_03579 0.16 -0.5 368,571 - BACOVA_03579 0.16 +0.2 368,571 - BACOVA_03579 0.16 +0.3 368,579 + BACOVA_03579 0.16 -0.9 368,579 + BACOVA_03579 0.16 +0.4 368,579 + BACOVA_03579 0.16 +0.1 368,580 - BACOVA_03579 0.16 -0.4 368,633 - BACOVA_03579 0.19 -0.7 368,636 + BACOVA_03579 0.19 -1.1 368,648 + BACOVA_03579 0.19 +1.5 368,648 + BACOVA_03579 0.19 -1.0 368,704 + BACOVA_03579 0.22 +1.5 368,705 - BACOVA_03579 0.22 +2.0 368,743 + BACOVA_03579 0.24 +0.1 368,744 - BACOVA_03579 0.24 +0.7 368,745 + BACOVA_03579 0.24 +0.2 368,779 + BACOVA_03579 0.26 +0.5 368,780 - BACOVA_03579 0.26 -1.0 368,780 - BACOVA_03579 0.26 +0.1 368,786 + BACOVA_03579 0.26 +0.9 368,812 + BACOVA_03579 0.28 -0.7 368,813 - BACOVA_03579 0.28 +0.4 368,813 - BACOVA_03579 0.28 +0.5 368,839 + BACOVA_03579 0.29 -0.1 368,841 + BACOVA_03579 0.29 +0.3 368,841 + BACOVA_03579 0.29 +0.6 368,847 - BACOVA_03579 0.29 +0.2 369,020 - BACOVA_03579 0.38 +0.1 369,022 + BACOVA_03579 0.38 -0.4 369,140 - BACOVA_03579 0.44 +0.9 369,142 - BACOVA_03579 0.44 -1.7 369,231 + BACOVA_03579 0.48 -0.4 369,232 - BACOVA_03579 0.48 -0.2 369,263 - BACOVA_03579 0.50 +0.0 369,271 - BACOVA_03579 0.50 +1.1 369,274 - BACOVA_03579 0.50 -0.5 369,274 - BACOVA_03579 0.50 -1.3 369,281 - BACOVA_03579 0.51 -0.2 369,281 - BACOVA_03579 0.51 +1.0 369,281 - BACOVA_03579 0.51 +0.1 369,375 + BACOVA_03579 0.55 +0.7 369,375 + BACOVA_03579 0.55 +0.2 369,435 + BACOVA_03579 0.58 +1.3 369,436 - BACOVA_03579 0.58 -0.4 369,440 - BACOVA_03579 0.59 +1.0 369,440 - BACOVA_03579 0.59 -1.4 369,474 + BACOVA_03579 0.60 -0.9 369,475 - BACOVA_03579 0.60 +0.6 369,475 - BACOVA_03579 0.60 -0.9 369,658 + BACOVA_03579 0.69 -0.9 369,721 - BACOVA_03579 0.73 +0.5 369,792 + BACOVA_03579 0.76 +0.2 369,792 + BACOVA_03579 0.76 -0.1 369,793 - BACOVA_03579 0.76 -0.1 369,799 + BACOVA_03579 0.76 -1.1 369,800 - BACOVA_03579 0.77 -0.7 369,800 - BACOVA_03579 0.77 +0.3 369,806 - BACOVA_03579 0.77 +0.4 369,820 - BACOVA_03579 0.78 +0.0 369,836 - BACOVA_03579 0.78 -0.3 369,870 + BACOVA_03579 0.80 +0.8 369,871 - BACOVA_03579 0.80 -0.5 369,898 + BACOVA_03579 0.81 -0.8 369,906 + BACOVA_03579 0.82 -1.7 369,907 - BACOVA_03579 0.82 +0.1 369,907 - BACOVA_03579 0.82 +0.4 369,919 - BACOVA_03579 0.82 +0.7 369,970 + BACOVA_03579 0.85 +0.5 370,020 + BACOVA_03579 0.87 +0.6 370,023 - BACOVA_03579 0.88 +0.3 370,023 - BACOVA_03579 0.88 -0.0 370,038 + BACOVA_03579 0.88 +0.7 370,042 - BACOVA_03579 0.89 -2.1 370,042 - BACOVA_03579 0.89 +0.1 370,042 - BACOVA_03579 0.89 +0.3 370,045 + BACOVA_03579 0.89 -0.8 370,046 - BACOVA_03579 0.89 +0.9 370,062 + BACOVA_03579 0.90 -0.4 370,062 + BACOVA_03579 0.90 +0.9 370,099 + +0.3 370,100 - +0.1 370,166 - +1.2 370,166 - +0.4 370,202 + -0.4 370,203 - +0.2 370,203 - -0.4 370,203 - +0.7 370,203 - -1.0 370,264 + +0.0 370,306 + -0.4 370,307 - -1.6 370,307 - +0.3 370,328 + -1.0 370,328 + +0.2 370,329 - -0.0 370,332 + +0.3 370,335 + -2.0 370,335 + -1.1 370,336 - -0.0 370,348 - +0.6 370,348 - +0.6 370,354 + -0.3 370,355 - +1.0 370,394 - -0.4 370,403 + -0.4 370,467 + BACOVA_03580 0.11 +0.3 370,472 + BACOVA_03580 0.11 -0.9 370,548 - BACOVA_03580 0.15 -1.1 370,548 - BACOVA_03580 0.15 +0.4 370,562 - BACOVA_03580 0.16 +0.2 370,576 + BACOVA_03580 0.17 -0.6 370,588 - BACOVA_03580 0.18 +2.5 370,600 + BACOVA_03580 0.19 +0.5 370,600 + BACOVA_03580 0.19 +0.9 370,601 - BACOVA_03580 0.19 +0.2 370,710 - BACOVA_03580 0.25 -0.5 370,747 - BACOVA_03580 0.27 -0.3 370,765 + BACOVA_03580 0.28 -0.2 370,766 - BACOVA_03580 0.28 +0.0 370,772 - BACOVA_03580 0.29 +0.6 370,887 + BACOVA_03580 0.36 +2.0 370,934 + BACOVA_03580 0.39 +0.9 370,954 + BACOVA_03580 0.40 +1.3 370,965 + BACOVA_03580 0.40 +0.4 370,966 - BACOVA_03580 0.40 -1.1 370,976 + BACOVA_03580 0.41 -0.3 370,977 - BACOVA_03580 0.41 -0.2 370,980 + BACOVA_03580 0.41 -0.6 370,980 + BACOVA_03580 0.41 +0.3 370,981 - BACOVA_03580 0.41 +0.3 370,981 - BACOVA_03580 0.41 -0.0 371,053 - BACOVA_03580 0.46 +0.4 371,065 - BACOVA_03580 0.46 +0.3 371,069 - BACOVA_03580 0.47 -0.1 371,100 + BACOVA_03580 0.48 -0.1 371,136 + BACOVA_03580 0.51 -0.1 371,200 + BACOVA_03580 0.54 -0.1 371,201 - BACOVA_03580 0.54 -0.5 371,215 + BACOVA_03580 0.55 +0.8 371,228 - BACOVA_03580 0.56 +0.3 371,228 - BACOVA_03580 0.56 -0.1 371,232 + BACOVA_03580 0.56 +0.6 371,250 + BACOVA_03580 0.57 -1.8
Or see this region's nucleotide sequence