Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03147

Experiment: Brucella 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03144 and BACOVA_03145 are separated by 71 nucleotidesBACOVA_03145 and BACOVA_03146 overlap by 4 nucleotidesBACOVA_03146 and BACOVA_03147 are separated by 13 nucleotidesBACOVA_03147 and BACOVA_03148 overlap by 11 nucleotidesBACOVA_03148 and BACOVA_03149 are separated by 114 nucleotidesBACOVA_03149 and BACOVA_03150 are separated by 54 nucleotides BACOVA_03143: BACOVA_03143 - putative toxin-antitoxin system, antitoxin component, at 235,259 to 235,636 _03143 BACOVA_03144: BACOVA_03144 - nucleotidyltransferase domain protein, at 235,620 to 235,913 _03144 BACOVA_03145: BACOVA_03145 - hypothetical protein, at 235,985 to 236,212 _03145 BACOVA_03146: BACOVA_03146 - hydrolase, P-loop family, at 236,209 to 236,622 _03146 BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460 _03147 BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893 _03148 BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340 _03149 BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135 _03150 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 235.676 kb on + strand, within BACOVA_03144at 235.710 kb on + strand, within BACOVA_03144at 235.745 kb on + strand, within BACOVA_03144at 235.829 kb on + strand, within BACOVA_03144at 235.983 kb on + strandat 235.984 kb on - strandat 235.984 kb on - strandat 236.024 kb on + strand, within BACOVA_03145at 236.044 kb on + strand, within BACOVA_03145at 236.045 kb on - strand, within BACOVA_03145at 236.045 kb on - strand, within BACOVA_03145at 236.054 kb on + strand, within BACOVA_03145at 236.061 kb on + strand, within BACOVA_03145at 236.193 kb on - strandat 236.193 kb on - strandat 236.193 kb on - strandat 236.197 kb on + strandat 236.198 kb on - strandat 236.198 kb on - strandat 236.200 kb on - strandat 236.213 kb on - strandat 236.222 kb on - strandat 236.625 kb on - strandat 236.632 kb on - strandat 236.635 kb on - strandat 236.638 kb on - strandat 236.638 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.748 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.812 kb on - strand, within BACOVA_03147at 236.926 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 237.212 kb on - strand, within BACOVA_03147at 237.359 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.428 kb on - strandat 237.428 kb on - strandat 237.428 kb on - strandat 237.435 kb on - strandat 237.438 kb on - strandat 237.472 kb on - strandat 237.596 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.686 kb on - strand, within BACOVA_03148at 237.691 kb on - strand, within BACOVA_03148at 237.877 kb on - strandat 237.900 kb on - strandat 237.902 kb on - strandat 237.938 kb on - strandat 237.938 kb on - strandat 237.957 kb on + strandat 237.990 kb on + strandat 237.991 kb on - strandat 237.993 kb on + strandat 237.994 kb on - strandat 238.003 kb on - strandat 238.022 kb on + strandat 238.022 kb on + strandat 238.023 kb on - strandat 238.023 kb on - strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.025 kb on - strandat 238.027 kb on + strandat 238.058 kb on - strand, within BACOVA_03149at 238.058 kb on - strand, within BACOVA_03149at 238.085 kb on + strand, within BACOVA_03149at 238.196 kb on - strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.220 kb on - strand, within BACOVA_03149at 238.250 kb on - strand, within BACOVA_03149at 238.282 kb on + strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.285 kb on - strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.299 kb on - strand, within BACOVA_03149at 238.306 kb on + strand, within BACOVA_03149at 238.307 kb on - strandat 238.308 kb on + strandat 238.309 kb on - strandat 238.309 kb on - strandat 238.338 kb on + strandat 238.338 kb on + strandat 238.339 kb on - strandat 238.344 kb on - strandat 238.349 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.352 kb on - strandat 238.383 kb on + strandat 238.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media
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235,676 + BACOVA_03144 0.19 +1.4
235,710 + BACOVA_03144 0.31 -0.7
235,745 + BACOVA_03144 0.43 -0.5
235,829 + BACOVA_03144 0.71 +0.7
235,983 + +0.8
235,984 - +0.4
235,984 - +0.1
236,024 + BACOVA_03145 0.17 +1.4
236,044 + BACOVA_03145 0.26 -0.2
236,045 - BACOVA_03145 0.26 +1.7
236,045 - BACOVA_03145 0.26 +0.8
236,054 + BACOVA_03145 0.30 -1.2
236,061 + BACOVA_03145 0.33 -0.2
236,193 - -0.2
236,193 - +0.2
236,193 - -0.0
236,197 + -0.4
236,198 - +0.1
236,198 - -0.5
236,200 - +0.0
236,213 - -0.2
236,222 - -0.2
236,625 - +0.5
236,632 - +0.0
236,635 - -0.6
236,638 - -0.3
236,638 - -0.9
236,703 - -1.4
236,703 - -0.3
236,703 - -0.1
236,748 - BACOVA_03147 0.14 -1.1
236,795 - BACOVA_03147 0.19 -0.6
236,795 - BACOVA_03147 0.19 -0.8
236,812 - BACOVA_03147 0.21 +0.2
236,926 - BACOVA_03147 0.35 -0.9
236,984 - BACOVA_03147 0.42 +1.4
236,984 - BACOVA_03147 0.42 +0.4
236,984 - BACOVA_03147 0.42 -0.5
237,212 - BACOVA_03147 0.70 -1.6
237,359 - BACOVA_03147 0.88 -0.4
237,361 - BACOVA_03147 0.88 +0.6
237,361 - BACOVA_03147 0.88 -1.0
237,361 - BACOVA_03147 0.88 -0.2
237,361 - BACOVA_03147 0.88 -0.0
237,361 - BACOVA_03147 0.88 -0.8
237,361 - BACOVA_03147 0.88 -0.3
237,361 - BACOVA_03147 0.88 +0.8
237,361 - BACOVA_03147 0.88 -0.4
237,428 - +0.3
237,428 - +0.1
237,428 - +0.5
237,435 - -1.7
237,438 - +0.5
237,472 - -0.5
237,596 - BACOVA_03148 0.33 +0.8
237,635 - BACOVA_03148 0.42 -1.2
237,635 - BACOVA_03148 0.42 -2.2
237,686 - BACOVA_03148 0.53 -0.2
237,691 - BACOVA_03148 0.54 -2.0
237,877 - -1.0
237,900 - +0.1
237,902 - -0.8
237,938 - -0.2
237,938 - -0.0
237,957 + -0.7
237,990 + -0.3
237,991 - -0.6
237,993 + +0.7
237,994 - -0.1
238,003 - -1.0
238,022 + -0.2
238,022 + -0.7
238,023 - +1.3
238,023 - +0.3
238,024 + +0.4
238,024 + -0.5
238,024 + -0.2
238,025 - -0.5
238,027 + -0.7
238,058 - BACOVA_03149 0.15 -0.3
238,058 - BACOVA_03149 0.15 +0.1
238,085 + BACOVA_03149 0.23 -0.5
238,196 - BACOVA_03149 0.56 -0.2
238,219 + BACOVA_03149 0.63 -0.2
238,219 + BACOVA_03149 0.63 +0.1
238,220 - BACOVA_03149 0.64 -0.1
238,250 - BACOVA_03149 0.73 +0.4
238,282 + BACOVA_03149 0.82 +0.3
238,283 - BACOVA_03149 0.83 -0.4
238,283 - BACOVA_03149 0.83 -0.2
238,283 - BACOVA_03149 0.83 -0.9
238,285 - BACOVA_03149 0.83 +0.8
238,286 + BACOVA_03149 0.83 +0.3
238,286 + BACOVA_03149 0.83 -0.8
238,286 + BACOVA_03149 0.83 -0.5
238,286 + BACOVA_03149 0.83 +0.8
238,286 + BACOVA_03149 0.83 -0.7
238,287 - BACOVA_03149 0.84 -0.5
238,287 - BACOVA_03149 0.84 +0.3
238,287 - BACOVA_03149 0.84 -0.9
238,287 - BACOVA_03149 0.84 +0.5
238,287 - BACOVA_03149 0.84 +1.8
238,287 - BACOVA_03149 0.84 -0.1
238,287 - BACOVA_03149 0.84 +0.8
238,299 - BACOVA_03149 0.87 -0.6
238,306 + BACOVA_03149 0.89 -0.3
238,307 - +1.8
238,308 + +0.7
238,309 - +0.3
238,309 - +0.3
238,338 + -0.7
238,338 + +0.1
238,339 - +0.4
238,344 - +0.3
238,349 + -0.4
238,351 + -1.9
238,351 + -0.0
238,351 + -1.5
238,352 - +0.1
238,383 + +0.7
238,457 + -0.3

Or see this region's nucleotide sequence