Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01687 and BACOVA_01688 are separated by 63 nucleotides BACOVA_01688 and BACOVA_01689 are separated by 62 nucleotides BACOVA_01689 and BACOVA_01690 overlap by 4 nucleotides BACOVA_01690 and BACOVA_01691 are separated by 158 nucleotides BACOVA_01691 and BACOVA_01692 are separated by 119 nucleotides BACOVA_01692 and BACOVA_01693 overlap by 44 nucleotides BACOVA_01693 and BACOVA_01694 are separated by 115 nucleotides
BACOVA_01687: BACOVA_01687 - putative alpha-1,2-mannosidase, at 106,391 to 110,761
_01687
BACOVA_01688: BACOVA_01688 - hypothetical protein, at 110,825 to 111,046
_01688
BACOVA_01689: BACOVA_01689 - hypothetical protein, at 111,109 to 111,522
_01689
BACOVA_01690: BACOVA_01690 - hypothetical protein, at 111,519 to 111,746
_01690
BACOVA_01691: BACOVA_01691 - bacterial transferase hexapeptide repeat protein, at 111,905 to 112,090
_01691
BACOVA_01692: BACOVA_01692 - hypothetical protein, at 112,210 to 112,320
_01692
BACOVA_01693: BACOVA_01693 - hypothetical protein, at 112,277 to 112,366
_01693
BACOVA_01694: BACOVA_01694 - hypothetical protein, at 112,482 to 113,030
_01694
Position (kb)
111
112 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 110.552 kb on + strand at 110.553 kb on - strand at 110.555 kb on - strand at 110.557 kb on - strand at 110.587 kb on + strand at 110.647 kb on + strand at 110.648 kb on - strand at 110.648 kb on - strand at 110.648 kb on - strand at 110.652 kb on - strand at 110.652 kb on - strand at 110.654 kb on - strand at 110.736 kb on + strand at 110.757 kb on - strand at 110.807 kb on - strand at 110.874 kb on + strand, within BACOVA_01688 at 110.874 kb on + strand, within BACOVA_01688 at 110.875 kb on - strand, within BACOVA_01688 at 110.875 kb on - strand, within BACOVA_01688 at 110.875 kb on - strand, within BACOVA_01688 at 110.876 kb on + strand, within BACOVA_01688 at 110.876 kb on + strand, within BACOVA_01688 at 110.876 kb on + strand, within BACOVA_01688 at 110.876 kb on + strand, within BACOVA_01688 at 110.877 kb on - strand, within BACOVA_01688 at 110.892 kb on + strand, within BACOVA_01688 at 110.894 kb on + strand, within BACOVA_01688 at 110.915 kb on + strand, within BACOVA_01688 at 110.941 kb on - strand, within BACOVA_01688 at 110.945 kb on + strand, within BACOVA_01688 at 110.996 kb on + strand, within BACOVA_01688 at 111.047 kb on - strand at 111.062 kb on + strand at 111.088 kb on + strand at 111.093 kb on + strand at 111.094 kb on - strand at 111.094 kb on - strand at 111.095 kb on + strand at 111.111 kb on - strand at 111.115 kb on + strand at 111.128 kb on - strand at 111.142 kb on + strand at 111.142 kb on + strand at 111.142 kb on + strand at 111.142 kb on + strand at 111.143 kb on - strand at 111.157 kb on - strand, within BACOVA_01689 at 111.178 kb on + strand, within BACOVA_01689 at 111.179 kb on - strand, within BACOVA_01689 at 111.184 kb on - strand, within BACOVA_01689 at 111.206 kb on - strand, within BACOVA_01689 at 111.210 kb on + strand, within BACOVA_01689 at 111.210 kb on + strand, within BACOVA_01689 at 111.211 kb on - strand, within BACOVA_01689 at 111.215 kb on + strand, within BACOVA_01689 at 111.238 kb on - strand, within BACOVA_01689 at 111.241 kb on - strand, within BACOVA_01689 at 111.241 kb on - strand, within BACOVA_01689 at 111.249 kb on + strand, within BACOVA_01689 at 111.253 kb on + strand, within BACOVA_01689 at 111.277 kb on + strand, within BACOVA_01689 at 111.278 kb on - strand, within BACOVA_01689 at 111.283 kb on - strand, within BACOVA_01689 at 111.284 kb on + strand, within BACOVA_01689 at 111.285 kb on - strand, within BACOVA_01689 at 111.330 kb on + strand, within BACOVA_01689 at 111.331 kb on - strand, within BACOVA_01689 at 111.345 kb on + strand, within BACOVA_01689 at 111.352 kb on - strand, within BACOVA_01689 at 111.420 kb on + strand, within BACOVA_01689 at 111.481 kb on + strand at 111.482 kb on - strand at 111.526 kb on - strand at 111.526 kb on - strand at 111.590 kb on + strand, within BACOVA_01690 at 111.590 kb on + strand, within BACOVA_01690 at 111.590 kb on + strand, within BACOVA_01690 at 111.605 kb on - strand, within BACOVA_01690 at 111.653 kb on - strand, within BACOVA_01690 at 111.676 kb on + strand, within BACOVA_01690 at 111.697 kb on - strand, within BACOVA_01690 at 111.698 kb on + strand, within BACOVA_01690 at 111.698 kb on + strand, within BACOVA_01690 at 111.698 kb on + strand, within BACOVA_01690 at 111.698 kb on + strand, within BACOVA_01690 at 111.699 kb on - strand, within BACOVA_01690 at 111.699 kb on - strand, within BACOVA_01690 at 111.781 kb on - strand at 111.786 kb on + strand at 111.850 kb on - strand at 111.850 kb on - strand at 111.850 kb on - strand at 111.852 kb on + strand at 111.857 kb on - strand at 111.904 kb on + strand at 111.969 kb on + strand, within BACOVA_01691 at 111.970 kb on - strand, within BACOVA_01691 at 112.016 kb on - strand, within BACOVA_01691 at 112.088 kb on + strand at 112.091 kb on + strand at 112.091 kb on + strand at 112.091 kb on + strand at 112.092 kb on - strand at 112.115 kb on + strand at 112.122 kb on + strand at 112.122 kb on + strand at 112.123 kb on - strand at 112.123 kb on - strand at 112.125 kb on - strand at 112.144 kb on - strand at 112.160 kb on - strand at 112.165 kb on + strand at 112.174 kb on + strand at 112.175 kb on - strand at 112.175 kb on - strand at 112.175 kb on - strand at 112.179 kb on + strand at 112.180 kb on - strand at 112.189 kb on - strand at 112.192 kb on + strand at 112.192 kb on + strand at 112.342 kb on + strand, within BACOVA_01693 at 112.411 kb on + strand at 112.412 kb on - strand at 112.466 kb on + strand at 112.471 kb on - strand at 112.490 kb on + strand at 112.493 kb on - strand at 112.493 kb on - strand at 112.504 kb on + strand at 112.505 kb on - strand at 112.532 kb on + strand at 112.561 kb on + strand, within BACOVA_01694 at 112.561 kb on + strand, within BACOVA_01694 at 112.613 kb on - strand, within BACOVA_01694 at 112.669 kb on + strand, within BACOVA_01694 at 112.670 kb on - strand, within BACOVA_01694
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 110,552 + +0.3 110,553 - -1.1 110,555 - +0.6 110,557 - -1.0 110,587 + -0.2 110,647 + -1.0 110,648 - +0.2 110,648 - -0.4 110,648 - +0.1 110,652 - -0.7 110,652 - -0.6 110,654 - +0.1 110,736 + -0.4 110,757 - -0.6 110,807 - -0.5 110,874 + BACOVA_01688 0.22 -0.7 110,874 + BACOVA_01688 0.22 -0.1 110,875 - BACOVA_01688 0.23 -0.1 110,875 - BACOVA_01688 0.23 -0.6 110,875 - BACOVA_01688 0.23 +1.6 110,876 + BACOVA_01688 0.23 +2.0 110,876 + BACOVA_01688 0.23 -0.6 110,876 + BACOVA_01688 0.23 -0.8 110,876 + BACOVA_01688 0.23 -0.0 110,877 - BACOVA_01688 0.23 -1.0 110,892 + BACOVA_01688 0.30 -0.7 110,894 + BACOVA_01688 0.31 -0.7 110,915 + BACOVA_01688 0.41 +0.6 110,941 - BACOVA_01688 0.52 +0.2 110,945 + BACOVA_01688 0.54 +0.2 110,996 + BACOVA_01688 0.77 -0.9 111,047 - +0.8 111,062 + -0.2 111,088 + -0.8 111,093 + -0.4 111,094 - -0.1 111,094 - -1.0 111,095 + -0.4 111,111 - -0.1 111,115 + -0.2 111,128 - -0.8 111,142 + +0.3 111,142 + +0.0 111,142 + -0.9 111,142 + -0.1 111,143 - +2.2 111,157 - BACOVA_01689 0.12 -0.7 111,178 + BACOVA_01689 0.17 -0.0 111,179 - BACOVA_01689 0.17 +0.9 111,184 - BACOVA_01689 0.18 -1.1 111,206 - BACOVA_01689 0.23 -0.1 111,210 + BACOVA_01689 0.24 +0.8 111,210 + BACOVA_01689 0.24 -0.4 111,211 - BACOVA_01689 0.25 +0.2 111,215 + BACOVA_01689 0.26 -1.7 111,238 - BACOVA_01689 0.31 -0.5 111,241 - BACOVA_01689 0.32 -1.7 111,241 - BACOVA_01689 0.32 -0.1 111,249 + BACOVA_01689 0.34 -0.8 111,253 + BACOVA_01689 0.35 -0.1 111,277 + BACOVA_01689 0.41 +0.6 111,278 - BACOVA_01689 0.41 +0.4 111,283 - BACOVA_01689 0.42 -1.5 111,284 + BACOVA_01689 0.42 +0.4 111,285 - BACOVA_01689 0.43 +0.9 111,330 + BACOVA_01689 0.53 -0.2 111,331 - BACOVA_01689 0.54 -0.7 111,345 + BACOVA_01689 0.57 +0.0 111,352 - BACOVA_01689 0.59 -0.1 111,420 + BACOVA_01689 0.75 -0.4 111,481 + -2.5 111,482 - +0.4 111,526 - +0.1 111,526 - +0.3 111,590 + BACOVA_01690 0.31 +0.3 111,590 + BACOVA_01690 0.31 +0.6 111,590 + BACOVA_01690 0.31 -0.2 111,605 - BACOVA_01690 0.38 +1.1 111,653 - BACOVA_01690 0.59 +0.1 111,676 + BACOVA_01690 0.69 +0.7 111,697 - BACOVA_01690 0.78 -0.5 111,698 + BACOVA_01690 0.79 -1.2 111,698 + BACOVA_01690 0.79 -0.1 111,698 + BACOVA_01690 0.79 +0.5 111,698 + BACOVA_01690 0.79 -0.4 111,699 - BACOVA_01690 0.79 +0.7 111,699 - BACOVA_01690 0.79 +0.2 111,781 - -0.0 111,786 + +0.1 111,850 - +0.6 111,850 - +0.1 111,850 - -0.4 111,852 + +1.0 111,857 - +0.3 111,904 + +0.3 111,969 + BACOVA_01691 0.34 -0.4 111,970 - BACOVA_01691 0.35 -0.5 112,016 - BACOVA_01691 0.60 +0.3 112,088 + +0.2 112,091 + +0.2 112,091 + -0.4 112,091 + -1.4 112,092 - +0.1 112,115 + -0.4 112,122 + +0.5 112,122 + +1.6 112,123 - -0.2 112,123 - +0.3 112,125 - -0.2 112,144 - -0.2 112,160 - +0.6 112,165 + +0.9 112,174 + +1.0 112,175 - -0.5 112,175 - -0.1 112,175 - +0.1 112,179 + +0.5 112,180 - +0.4 112,189 - +0.6 112,192 + +0.5 112,192 + +0.3 112,342 + BACOVA_01693 0.72 -1.0 112,411 + -0.4 112,412 - +0.6 112,466 + -0.1 112,471 - -1.2 112,490 + +0.9 112,493 - +1.3 112,493 - -1.2 112,504 + -0.2 112,505 - -0.4 112,532 + -0.3 112,561 + BACOVA_01694 0.14 -1.0 112,561 + BACOVA_01694 0.14 +0.4 112,613 - BACOVA_01694 0.24 +0.6 112,669 + BACOVA_01694 0.34 +1.1 112,670 - BACOVA_01694 0.34 -0.4
Or see this region's nucleotide sequence