Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01690

Experiment: Brucella 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01687 and BACOVA_01688 are separated by 63 nucleotidesBACOVA_01688 and BACOVA_01689 are separated by 62 nucleotidesBACOVA_01689 and BACOVA_01690 overlap by 4 nucleotidesBACOVA_01690 and BACOVA_01691 are separated by 158 nucleotidesBACOVA_01691 and BACOVA_01692 are separated by 119 nucleotidesBACOVA_01692 and BACOVA_01693 overlap by 44 nucleotidesBACOVA_01693 and BACOVA_01694 are separated by 115 nucleotides BACOVA_01687: BACOVA_01687 - putative alpha-1,2-mannosidase, at 106,391 to 110,761 _01687 BACOVA_01688: BACOVA_01688 - hypothetical protein, at 110,825 to 111,046 _01688 BACOVA_01689: BACOVA_01689 - hypothetical protein, at 111,109 to 111,522 _01689 BACOVA_01690: BACOVA_01690 - hypothetical protein, at 111,519 to 111,746 _01690 BACOVA_01691: BACOVA_01691 - bacterial transferase hexapeptide repeat protein, at 111,905 to 112,090 _01691 BACOVA_01692: BACOVA_01692 - hypothetical protein, at 112,210 to 112,320 _01692 BACOVA_01693: BACOVA_01693 - hypothetical protein, at 112,277 to 112,366 _01693 BACOVA_01694: BACOVA_01694 - hypothetical protein, at 112,482 to 113,030 _01694 Position (kb) 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 110.552 kb on + strandat 110.553 kb on - strandat 110.555 kb on - strandat 110.557 kb on - strandat 110.587 kb on + strandat 110.647 kb on + strandat 110.648 kb on - strandat 110.648 kb on - strandat 110.648 kb on - strandat 110.652 kb on - strandat 110.652 kb on - strandat 110.654 kb on - strandat 110.736 kb on + strandat 110.757 kb on - strandat 110.807 kb on - strandat 110.874 kb on + strand, within BACOVA_01688at 110.874 kb on + strand, within BACOVA_01688at 110.875 kb on - strand, within BACOVA_01688at 110.875 kb on - strand, within BACOVA_01688at 110.875 kb on - strand, within BACOVA_01688at 110.876 kb on + strand, within BACOVA_01688at 110.876 kb on + strand, within BACOVA_01688at 110.876 kb on + strand, within BACOVA_01688at 110.876 kb on + strand, within BACOVA_01688at 110.877 kb on - strand, within BACOVA_01688at 110.892 kb on + strand, within BACOVA_01688at 110.894 kb on + strand, within BACOVA_01688at 110.915 kb on + strand, within BACOVA_01688at 110.941 kb on - strand, within BACOVA_01688at 110.945 kb on + strand, within BACOVA_01688at 110.996 kb on + strand, within BACOVA_01688at 111.047 kb on - strandat 111.062 kb on + strandat 111.088 kb on + strandat 111.093 kb on + strandat 111.094 kb on - strandat 111.094 kb on - strandat 111.095 kb on + strandat 111.111 kb on - strandat 111.115 kb on + strandat 111.128 kb on - strandat 111.142 kb on + strandat 111.142 kb on + strandat 111.142 kb on + strandat 111.142 kb on + strandat 111.143 kb on - strandat 111.157 kb on - strand, within BACOVA_01689at 111.178 kb on + strand, within BACOVA_01689at 111.179 kb on - strand, within BACOVA_01689at 111.184 kb on - strand, within BACOVA_01689at 111.206 kb on - strand, within BACOVA_01689at 111.210 kb on + strand, within BACOVA_01689at 111.210 kb on + strand, within BACOVA_01689at 111.211 kb on - strand, within BACOVA_01689at 111.215 kb on + strand, within BACOVA_01689at 111.238 kb on - strand, within BACOVA_01689at 111.241 kb on - strand, within BACOVA_01689at 111.241 kb on - strand, within BACOVA_01689at 111.249 kb on + strand, within BACOVA_01689at 111.253 kb on + strand, within BACOVA_01689at 111.277 kb on + strand, within BACOVA_01689at 111.278 kb on - strand, within BACOVA_01689at 111.283 kb on - strand, within BACOVA_01689at 111.284 kb on + strand, within BACOVA_01689at 111.285 kb on - strand, within BACOVA_01689at 111.330 kb on + strand, within BACOVA_01689at 111.331 kb on - strand, within BACOVA_01689at 111.345 kb on + strand, within BACOVA_01689at 111.352 kb on - strand, within BACOVA_01689at 111.420 kb on + strand, within BACOVA_01689at 111.481 kb on + strandat 111.482 kb on - strandat 111.526 kb on - strandat 111.526 kb on - strandat 111.590 kb on + strand, within BACOVA_01690at 111.590 kb on + strand, within BACOVA_01690at 111.590 kb on + strand, within BACOVA_01690at 111.605 kb on - strand, within BACOVA_01690at 111.653 kb on - strand, within BACOVA_01690at 111.676 kb on + strand, within BACOVA_01690at 111.697 kb on - strand, within BACOVA_01690at 111.698 kb on + strand, within BACOVA_01690at 111.698 kb on + strand, within BACOVA_01690at 111.698 kb on + strand, within BACOVA_01690at 111.698 kb on + strand, within BACOVA_01690at 111.699 kb on - strand, within BACOVA_01690at 111.699 kb on - strand, within BACOVA_01690at 111.781 kb on - strandat 111.786 kb on + strandat 111.850 kb on - strandat 111.850 kb on - strandat 111.850 kb on - strandat 111.852 kb on + strandat 111.857 kb on - strandat 111.904 kb on + strandat 111.969 kb on + strand, within BACOVA_01691at 111.970 kb on - strand, within BACOVA_01691at 112.016 kb on - strand, within BACOVA_01691at 112.088 kb on + strandat 112.091 kb on + strandat 112.091 kb on + strandat 112.091 kb on + strandat 112.092 kb on - strandat 112.115 kb on + strandat 112.122 kb on + strandat 112.122 kb on + strandat 112.123 kb on - strandat 112.123 kb on - strandat 112.125 kb on - strandat 112.144 kb on - strandat 112.160 kb on - strandat 112.165 kb on + strandat 112.174 kb on + strandat 112.175 kb on - strandat 112.175 kb on - strandat 112.175 kb on - strandat 112.179 kb on + strandat 112.180 kb on - strandat 112.189 kb on - strandat 112.192 kb on + strandat 112.192 kb on + strandat 112.342 kb on + strand, within BACOVA_01693at 112.411 kb on + strandat 112.412 kb on - strandat 112.466 kb on + strandat 112.471 kb on - strandat 112.490 kb on + strandat 112.493 kb on - strandat 112.493 kb on - strandat 112.504 kb on + strandat 112.505 kb on - strandat 112.532 kb on + strandat 112.561 kb on + strand, within BACOVA_01694at 112.561 kb on + strand, within BACOVA_01694at 112.613 kb on - strand, within BACOVA_01694at 112.669 kb on + strand, within BACOVA_01694at 112.670 kb on - strand, within BACOVA_01694

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media
remove
110,552 + +0.3
110,553 - -1.1
110,555 - +0.6
110,557 - -1.0
110,587 + -0.2
110,647 + -1.0
110,648 - +0.2
110,648 - -0.4
110,648 - +0.1
110,652 - -0.7
110,652 - -0.6
110,654 - +0.1
110,736 + -0.4
110,757 - -0.6
110,807 - -0.5
110,874 + BACOVA_01688 0.22 -0.7
110,874 + BACOVA_01688 0.22 -0.1
110,875 - BACOVA_01688 0.23 -0.1
110,875 - BACOVA_01688 0.23 -0.6
110,875 - BACOVA_01688 0.23 +1.6
110,876 + BACOVA_01688 0.23 +2.0
110,876 + BACOVA_01688 0.23 -0.6
110,876 + BACOVA_01688 0.23 -0.8
110,876 + BACOVA_01688 0.23 -0.0
110,877 - BACOVA_01688 0.23 -1.0
110,892 + BACOVA_01688 0.30 -0.7
110,894 + BACOVA_01688 0.31 -0.7
110,915 + BACOVA_01688 0.41 +0.6
110,941 - BACOVA_01688 0.52 +0.2
110,945 + BACOVA_01688 0.54 +0.2
110,996 + BACOVA_01688 0.77 -0.9
111,047 - +0.8
111,062 + -0.2
111,088 + -0.8
111,093 + -0.4
111,094 - -0.1
111,094 - -1.0
111,095 + -0.4
111,111 - -0.1
111,115 + -0.2
111,128 - -0.8
111,142 + +0.3
111,142 + +0.0
111,142 + -0.9
111,142 + -0.1
111,143 - +2.2
111,157 - BACOVA_01689 0.12 -0.7
111,178 + BACOVA_01689 0.17 -0.0
111,179 - BACOVA_01689 0.17 +0.9
111,184 - BACOVA_01689 0.18 -1.1
111,206 - BACOVA_01689 0.23 -0.1
111,210 + BACOVA_01689 0.24 +0.8
111,210 + BACOVA_01689 0.24 -0.4
111,211 - BACOVA_01689 0.25 +0.2
111,215 + BACOVA_01689 0.26 -1.7
111,238 - BACOVA_01689 0.31 -0.5
111,241 - BACOVA_01689 0.32 -1.7
111,241 - BACOVA_01689 0.32 -0.1
111,249 + BACOVA_01689 0.34 -0.8
111,253 + BACOVA_01689 0.35 -0.1
111,277 + BACOVA_01689 0.41 +0.6
111,278 - BACOVA_01689 0.41 +0.4
111,283 - BACOVA_01689 0.42 -1.5
111,284 + BACOVA_01689 0.42 +0.4
111,285 - BACOVA_01689 0.43 +0.9
111,330 + BACOVA_01689 0.53 -0.2
111,331 - BACOVA_01689 0.54 -0.7
111,345 + BACOVA_01689 0.57 +0.0
111,352 - BACOVA_01689 0.59 -0.1
111,420 + BACOVA_01689 0.75 -0.4
111,481 + -2.5
111,482 - +0.4
111,526 - +0.1
111,526 - +0.3
111,590 + BACOVA_01690 0.31 +0.3
111,590 + BACOVA_01690 0.31 +0.6
111,590 + BACOVA_01690 0.31 -0.2
111,605 - BACOVA_01690 0.38 +1.1
111,653 - BACOVA_01690 0.59 +0.1
111,676 + BACOVA_01690 0.69 +0.7
111,697 - BACOVA_01690 0.78 -0.5
111,698 + BACOVA_01690 0.79 -1.2
111,698 + BACOVA_01690 0.79 -0.1
111,698 + BACOVA_01690 0.79 +0.5
111,698 + BACOVA_01690 0.79 -0.4
111,699 - BACOVA_01690 0.79 +0.7
111,699 - BACOVA_01690 0.79 +0.2
111,781 - -0.0
111,786 + +0.1
111,850 - +0.6
111,850 - +0.1
111,850 - -0.4
111,852 + +1.0
111,857 - +0.3
111,904 + +0.3
111,969 + BACOVA_01691 0.34 -0.4
111,970 - BACOVA_01691 0.35 -0.5
112,016 - BACOVA_01691 0.60 +0.3
112,088 + +0.2
112,091 + +0.2
112,091 + -0.4
112,091 + -1.4
112,092 - +0.1
112,115 + -0.4
112,122 + +0.5
112,122 + +1.6
112,123 - -0.2
112,123 - +0.3
112,125 - -0.2
112,144 - -0.2
112,160 - +0.6
112,165 + +0.9
112,174 + +1.0
112,175 - -0.5
112,175 - -0.1
112,175 - +0.1
112,179 + +0.5
112,180 - +0.4
112,189 - +0.6
112,192 + +0.5
112,192 + +0.3
112,342 + BACOVA_01693 0.72 -1.0
112,411 + -0.4
112,412 - +0.6
112,466 + -0.1
112,471 - -1.2
112,490 + +0.9
112,493 - +1.3
112,493 - -1.2
112,504 + -0.2
112,505 - -0.4
112,532 + -0.3
112,561 + BACOVA_01694 0.14 -1.0
112,561 + BACOVA_01694 0.14 +0.4
112,613 - BACOVA_01694 0.24 +0.6
112,669 + BACOVA_01694 0.34 +1.1
112,670 - BACOVA_01694 0.34 -0.4

Or see this region's nucleotide sequence