Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00710 and BACOVA_00711 are separated by 29 nucleotides BACOVA_00711 and BACOVA_00712 are separated by 108 nucleotides BACOVA_00712 and BACOVA_00713 are separated by 94 nucleotides
BACOVA_00710: BACOVA_00710 - transcriptional regulator, AraC family, at 82,632 to 83,483
_00710
BACOVA_00711: BACOVA_00711 - hypothetical protein, at 83,513 to 83,629
_00711
BACOVA_00712: BACOVA_00712 - hypothetical protein, at 83,738 to 85,300
_00712
BACOVA_00713: BACOVA_00713 - hypothetical protein, at 85,395 to 85,769
_00713
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 82.797 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.903 kb on + strand, within BACOVA_00710 at 82.917 kb on + strand, within BACOVA_00710 at 82.990 kb on + strand, within BACOVA_00710 at 83.013 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.019 kb on - strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.022 kb on - strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.024 kb on - strand, within BACOVA_00710 at 83.026 kb on - strand, within BACOVA_00710 at 83.036 kb on + strand, within BACOVA_00710 at 83.037 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.082 kb on + strand, within BACOVA_00710 at 83.095 kb on + strand, within BACOVA_00710 at 83.096 kb on - strand, within BACOVA_00710 at 83.107 kb on - strand, within BACOVA_00710 at 83.160 kb on + strand, within BACOVA_00710 at 83.161 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.203 kb on + strand, within BACOVA_00710 at 83.204 kb on - strand, within BACOVA_00710 at 83.228 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.267 kb on + strand, within BACOVA_00710 at 83.268 kb on - strand, within BACOVA_00710 at 83.279 kb on + strand, within BACOVA_00710 at 83.304 kb on + strand, within BACOVA_00710 at 83.355 kb on + strand, within BACOVA_00710 at 83.359 kb on - strand, within BACOVA_00710 at 83.418 kb on - strand at 83.421 kb on - strand at 83.421 kb on - strand at 83.423 kb on + strand at 83.424 kb on - strand at 83.424 kb on - strand at 83.462 kb on + strand at 83.475 kb on - strand at 83.505 kb on - strand at 83.522 kb on - strand at 83.522 kb on - strand at 83.588 kb on - strand, within BACOVA_00711 at 83.639 kb on + strand at 83.639 kb on + strand at 83.640 kb on - strand at 83.642 kb on - strand at 83.650 kb on - strand at 83.650 kb on - strand at 83.694 kb on + strand at 83.694 kb on + strand at 83.695 kb on - strand at 83.695 kb on - strand at 83.713 kb on + strand at 83.716 kb on + strand at 83.716 kb on + strand at 83.721 kb on - strand at 83.756 kb on + strand at 83.772 kb on + strand at 83.780 kb on - strand at 83.794 kb on + strand at 83.794 kb on + strand at 83.803 kb on + strand at 83.803 kb on + strand at 83.829 kb on - strand at 83.858 kb on + strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.866 kb on + strand at 83.867 kb on - strand at 83.891 kb on - strand at 83.906 kb on - strand, within BACOVA_00712 at 83.939 kb on - strand, within BACOVA_00712 at 83.950 kb on + strand, within BACOVA_00712 at 83.991 kb on + strand, within BACOVA_00712 at 84.005 kb on - strand, within BACOVA_00712 at 84.035 kb on - strand, within BACOVA_00712 at 84.036 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.095 kb on - strand, within BACOVA_00712 at 84.109 kb on + strand, within BACOVA_00712 at 84.118 kb on + strand, within BACOVA_00712 at 84.136 kb on + strand, within BACOVA_00712 at 84.137 kb on - strand, within BACOVA_00712 at 84.139 kb on + strand, within BACOVA_00712 at 84.140 kb on - strand, within BACOVA_00712 at 84.142 kb on + strand, within BACOVA_00712 at 84.156 kb on + strand, within BACOVA_00712 at 84.174 kb on + strand, within BACOVA_00712 at 84.187 kb on - strand, within BACOVA_00712 at 84.193 kb on + strand, within BACOVA_00712 at 84.220 kb on + strand, within BACOVA_00712 at 84.268 kb on + strand, within BACOVA_00712 at 84.287 kb on - strand, within BACOVA_00712 at 84.309 kb on + strand, within BACOVA_00712 at 84.310 kb on - strand, within BACOVA_00712 at 84.370 kb on + strand, within BACOVA_00712 at 84.391 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.472 kb on + strand, within BACOVA_00712 at 84.473 kb on - strand, within BACOVA_00712 at 84.496 kb on + strand, within BACOVA_00712 at 84.515 kb on + strand, within BACOVA_00712 at 84.516 kb on - strand, within BACOVA_00712 at 84.584 kb on - strand, within BACOVA_00712 at 84.589 kb on + strand, within BACOVA_00712 at 84.610 kb on - strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.632 kb on + strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.634 kb on + strand, within BACOVA_00712 at 84.634 kb on + strand, within BACOVA_00712 at 84.635 kb on - strand, within BACOVA_00712 at 84.670 kb on + strand, within BACOVA_00712 at 84.699 kb on + strand, within BACOVA_00712 at 84.710 kb on - strand, within BACOVA_00712 at 84.712 kb on + strand, within BACOVA_00712 at 84.712 kb on + strand, within BACOVA_00712 at 84.751 kb on - strand, within BACOVA_00712 at 84.763 kb on + strand, within BACOVA_00712 at 84.789 kb on + strand, within BACOVA_00712 at 84.826 kb on + strand, within BACOVA_00712 at 84.827 kb on - strand, within BACOVA_00712 at 84.833 kb on - strand, within BACOVA_00712 at 84.841 kb on + strand, within BACOVA_00712 at 84.842 kb on - strand, within BACOVA_00712 at 84.852 kb on - strand, within BACOVA_00712 at 84.852 kb on - strand, within BACOVA_00712 at 84.863 kb on - strand, within BACOVA_00712 at 84.870 kb on + strand, within BACOVA_00712 at 84.883 kb on + strand, within BACOVA_00712 at 84.883 kb on + strand, within BACOVA_00712 at 84.884 kb on - strand, within BACOVA_00712 at 84.887 kb on + strand, within BACOVA_00712 at 84.887 kb on + strand, within BACOVA_00712 at 84.888 kb on - strand, within BACOVA_00712 at 84.906 kb on - strand, within BACOVA_00712 at 84.908 kb on + strand, within BACOVA_00712 at 84.909 kb on - strand, within BACOVA_00712 at 84.910 kb on + strand, within BACOVA_00712 at 84.910 kb on + strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.959 kb on - strand, within BACOVA_00712 at 84.973 kb on + strand, within BACOVA_00712 at 84.988 kb on + strand, within BACOVA_00712 at 85.033 kb on + strand, within BACOVA_00712 at 85.034 kb on - strand, within BACOVA_00712 at 85.036 kb on + strand, within BACOVA_00712 at 85.039 kb on + strand, within BACOVA_00712 at 85.046 kb on + strand, within BACOVA_00712 at 85.079 kb on - strand, within BACOVA_00712 at 85.079 kb on - strand, within BACOVA_00712 at 85.082 kb on - strand, within BACOVA_00712 at 85.082 kb on - strand, within BACOVA_00712 at 85.085 kb on - strand, within BACOVA_00712 at 85.138 kb on + strand, within BACOVA_00712 at 85.138 kb on + strand, within BACOVA_00712 at 85.139 kb on - strand, within BACOVA_00712 at 85.144 kb on + strand at 85.144 kb on + strand at 85.145 kb on - strand at 85.147 kb on + strand at 85.148 kb on - strand at 85.153 kb on + strand at 85.205 kb on - strand at 85.209 kb on + strand at 85.210 kb on - strand at 85.301 kb on + strand at 85.302 kb on - strand at 85.305 kb on + strand at 85.306 kb on - strand at 85.307 kb on + strand at 85.308 kb on - strand at 85.313 kb on - strand at 85.317 kb on - strand at 85.317 kb on - strand at 85.317 kb on - strand at 85.319 kb on - strand at 85.325 kb on - strand at 85.325 kb on - strand at 85.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 82,797 - BACOVA_00710 0.19 -0.1 82,804 - BACOVA_00710 0.20 -0.5 82,804 - BACOVA_00710 0.20 +0.2 82,804 - BACOVA_00710 0.20 -0.3 82,836 - BACOVA_00710 0.24 +0.8 82,836 - BACOVA_00710 0.24 +0.4 82,838 + BACOVA_00710 0.24 +0.6 82,838 + BACOVA_00710 0.24 -1.3 82,839 - BACOVA_00710 0.24 -1.1 82,839 - BACOVA_00710 0.24 -0.5 82,839 - BACOVA_00710 0.24 +1.8 82,884 + BACOVA_00710 0.30 +0.1 82,884 + BACOVA_00710 0.30 +0.8 82,885 - BACOVA_00710 0.30 -1.2 82,885 - BACOVA_00710 0.30 +0.3 82,885 - BACOVA_00710 0.30 -0.1 82,903 + BACOVA_00710 0.32 +0.5 82,917 + BACOVA_00710 0.33 -0.5 82,990 + BACOVA_00710 0.42 -0.2 83,013 + BACOVA_00710 0.45 -0.3 83,018 + BACOVA_00710 0.45 +0.1 83,018 + BACOVA_00710 0.45 +0.8 83,018 + BACOVA_00710 0.45 -0.8 83,019 - BACOVA_00710 0.45 -0.2 83,021 + BACOVA_00710 0.46 +0.2 83,021 + BACOVA_00710 0.46 -1.7 83,021 + BACOVA_00710 0.46 -1.5 83,022 - BACOVA_00710 0.46 +0.1 83,023 + BACOVA_00710 0.46 +0.5 83,023 + BACOVA_00710 0.46 -0.7 83,024 - BACOVA_00710 0.46 -0.8 83,026 - BACOVA_00710 0.46 +0.9 83,036 + BACOVA_00710 0.47 +0.4 83,037 - BACOVA_00710 0.48 -1.0 83,040 - BACOVA_00710 0.48 -0.3 83,040 - BACOVA_00710 0.48 +1.7 83,040 - BACOVA_00710 0.48 +0.9 83,082 + BACOVA_00710 0.53 +0.2 83,095 + BACOVA_00710 0.54 -0.9 83,096 - BACOVA_00710 0.54 +0.3 83,107 - BACOVA_00710 0.56 +0.5 83,160 + BACOVA_00710 0.62 +1.0 83,161 - BACOVA_00710 0.62 -0.7 83,190 - BACOVA_00710 0.65 -0.2 83,190 - BACOVA_00710 0.65 +0.4 83,200 - BACOVA_00710 0.67 -0.6 83,200 - BACOVA_00710 0.67 -0.0 83,203 + BACOVA_00710 0.67 -0.3 83,204 - BACOVA_00710 0.67 -0.5 83,228 - BACOVA_00710 0.70 +0.3 83,257 - BACOVA_00710 0.73 +0.0 83,257 - BACOVA_00710 0.73 +0.3 83,267 + BACOVA_00710 0.75 -1.2 83,268 - BACOVA_00710 0.75 -0.8 83,279 + BACOVA_00710 0.76 -2.8 83,304 + BACOVA_00710 0.79 +1.8 83,355 + BACOVA_00710 0.85 +0.6 83,359 - BACOVA_00710 0.85 -0.3 83,418 - -1.1 83,421 - -0.9 83,421 - -0.6 83,423 + +0.6 83,424 - +0.9 83,424 - +1.1 83,462 + +1.1 83,475 - +0.2 83,505 - -0.6 83,522 - -2.4 83,522 - -1.6 83,588 - BACOVA_00711 0.64 +1.8 83,639 + -0.2 83,639 + -1.1 83,640 - -0.6 83,642 - -0.5 83,650 - +0.2 83,650 - -1.0 83,694 + +0.5 83,694 + -0.4 83,695 - +0.2 83,695 - -0.4 83,713 + +0.1 83,716 + +0.2 83,716 + -0.2 83,721 - -0.6 83,756 + +0.4 83,772 + +0.5 83,780 - +0.1 83,794 + +0.1 83,794 + +0.3 83,803 + +0.6 83,803 + +0.0 83,829 - -0.8 83,858 + -0.2 83,859 - +0.4 83,859 - -0.9 83,859 - +0.2 83,866 + -0.0 83,867 - -1.2 83,891 - -0.0 83,906 - BACOVA_00712 0.11 +0.1 83,939 - BACOVA_00712 0.13 -0.2 83,950 + BACOVA_00712 0.14 -1.1 83,991 + BACOVA_00712 0.16 +0.2 84,005 - BACOVA_00712 0.17 +0.0 84,035 - BACOVA_00712 0.19 -2.2 84,036 + BACOVA_00712 0.19 -0.0 84,094 + BACOVA_00712 0.23 -0.5 84,094 + BACOVA_00712 0.23 -1.0 84,095 - BACOVA_00712 0.23 +0.3 84,109 + BACOVA_00712 0.24 +0.4 84,118 + BACOVA_00712 0.24 -0.1 84,136 + BACOVA_00712 0.25 -0.2 84,137 - BACOVA_00712 0.26 -0.2 84,139 + BACOVA_00712 0.26 +0.8 84,140 - BACOVA_00712 0.26 +0.5 84,142 + BACOVA_00712 0.26 +1.0 84,156 + BACOVA_00712 0.27 -2.2 84,174 + BACOVA_00712 0.28 -0.3 84,187 - BACOVA_00712 0.29 +1.2 84,193 + BACOVA_00712 0.29 +1.4 84,220 + BACOVA_00712 0.31 -0.3 84,268 + BACOVA_00712 0.34 -0.1 84,287 - BACOVA_00712 0.35 -0.7 84,309 + BACOVA_00712 0.37 +0.5 84,310 - BACOVA_00712 0.37 -0.2 84,370 + BACOVA_00712 0.40 -0.8 84,391 + BACOVA_00712 0.42 -1.6 84,451 + BACOVA_00712 0.46 -1.4 84,451 + BACOVA_00712 0.46 +0.5 84,452 - BACOVA_00712 0.46 +1.1 84,452 - BACOVA_00712 0.46 +0.4 84,472 + BACOVA_00712 0.47 -0.3 84,473 - BACOVA_00712 0.47 -0.9 84,496 + BACOVA_00712 0.48 -1.3 84,515 + BACOVA_00712 0.50 +0.4 84,516 - BACOVA_00712 0.50 +0.2 84,584 - BACOVA_00712 0.54 +2.2 84,589 + BACOVA_00712 0.54 +0.4 84,610 - BACOVA_00712 0.56 +0.3 84,630 + BACOVA_00712 0.57 +0.8 84,630 + BACOVA_00712 0.57 -0.6 84,630 + BACOVA_00712 0.57 -0.2 84,632 + BACOVA_00712 0.57 +0.6 84,633 - BACOVA_00712 0.57 +0.2 84,633 - BACOVA_00712 0.57 +1.0 84,633 - BACOVA_00712 0.57 -0.5 84,633 - BACOVA_00712 0.57 -1.1 84,634 + BACOVA_00712 0.57 -0.4 84,634 + BACOVA_00712 0.57 +1.5 84,635 - BACOVA_00712 0.57 +0.6 84,670 + BACOVA_00712 0.60 -0.5 84,699 + BACOVA_00712 0.61 -0.4 84,710 - BACOVA_00712 0.62 +0.3 84,712 + BACOVA_00712 0.62 -0.4 84,712 + BACOVA_00712 0.62 +0.0 84,751 - BACOVA_00712 0.65 +0.2 84,763 + BACOVA_00712 0.66 +0.1 84,789 + BACOVA_00712 0.67 +0.1 84,826 + BACOVA_00712 0.70 -0.3 84,827 - BACOVA_00712 0.70 -0.9 84,833 - BACOVA_00712 0.70 +1.0 84,841 + BACOVA_00712 0.71 -0.5 84,842 - BACOVA_00712 0.71 +0.2 84,852 - BACOVA_00712 0.71 -1.5 84,852 - BACOVA_00712 0.71 -1.6 84,863 - BACOVA_00712 0.72 -0.7 84,870 + BACOVA_00712 0.72 -0.6 84,883 + BACOVA_00712 0.73 +0.3 84,883 + BACOVA_00712 0.73 +0.2 84,884 - BACOVA_00712 0.73 +0.8 84,887 + BACOVA_00712 0.74 +0.1 84,887 + BACOVA_00712 0.74 -0.3 84,888 - BACOVA_00712 0.74 +0.6 84,906 - BACOVA_00712 0.75 -0.2 84,908 + BACOVA_00712 0.75 -1.8 84,909 - BACOVA_00712 0.75 -0.5 84,910 + BACOVA_00712 0.75 -0.5 84,910 + BACOVA_00712 0.75 -0.5 84,911 - BACOVA_00712 0.75 +0.3 84,911 - BACOVA_00712 0.75 -0.3 84,911 - BACOVA_00712 0.75 -0.5 84,959 - BACOVA_00712 0.78 -0.1 84,973 + BACOVA_00712 0.79 -1.0 84,988 + BACOVA_00712 0.80 -0.2 85,033 + BACOVA_00712 0.83 -0.6 85,034 - BACOVA_00712 0.83 -1.5 85,036 + BACOVA_00712 0.83 -0.6 85,039 + BACOVA_00712 0.83 +0.8 85,046 + BACOVA_00712 0.84 -1.5 85,079 - BACOVA_00712 0.86 -0.6 85,079 - BACOVA_00712 0.86 +0.2 85,082 - BACOVA_00712 0.86 -0.4 85,082 - BACOVA_00712 0.86 -0.7 85,085 - BACOVA_00712 0.86 -0.8 85,138 + BACOVA_00712 0.90 -1.5 85,138 + BACOVA_00712 0.90 +0.5 85,139 - BACOVA_00712 0.90 -0.5 85,144 + +0.8 85,144 + +0.3 85,145 - -0.1 85,147 + -0.6 85,148 - +1.1 85,153 + -0.8 85,205 - -0.0 85,209 + -0.3 85,210 - -0.6 85,301 + +0.7 85,302 - +0.2 85,305 + +0.5 85,306 - +0.3 85,307 + -1.4 85,308 - +0.0 85,313 - -0.3 85,317 - -1.2 85,317 - -0.7 85,317 - -0.6 85,319 - +0.7 85,325 - +0.8 85,325 - +0.2 85,351 - +0.8
Or see this region's nucleotide sequence