Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides BACOVA_00543 and BACOVA_00544 are separated by 191 nucleotides BACOVA_00544 and BACOVA_00545 overlap by 4 nucleotides BACOVA_00545 and BACOVA_00546 are separated by 352 nucleotides
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
BACOVA_00544: BACOVA_00544 - hypothetical protein, at 42,272 to 42,379
_00544
BACOVA_00545: BACOVA_00545 - hypothetical protein, at 42,376 to 42,621
_00545
BACOVA_00546: BACOVA_00546 - hypothetical protein, at 42,974 to 43,198
_00546
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand at 41.789 kb on + strand, within BACOVA_00543 at 41.982 kb on + strand, within BACOVA_00543 at 42.208 kb on + strand at 42.275 kb on + strand at 42.309 kb on + strand, within BACOVA_00544 at 42.427 kb on + strand, within BACOVA_00545 at 42.452 kb on + strand, within BACOVA_00545 at 42.468 kb on - strand, within BACOVA_00545 at 42.478 kb on + strand, within BACOVA_00545 at 42.513 kb on + strand, within BACOVA_00545 at 42.524 kb on + strand, within BACOVA_00545 at 42.525 kb on - strand, within BACOVA_00545 at 42.571 kb on + strand, within BACOVA_00545 at 42.587 kb on + strand, within BACOVA_00545 at 42.645 kb on + strand at 42.651 kb on + strand at 42.670 kb on + strand at 42.672 kb on + strand at 42.687 kb on + strand at 42.687 kb on + strand at 42.691 kb on + strand at 42.691 kb on + strand at 42.713 kb on - strand at 42.730 kb on - strand at 42.734 kb on - strand at 42.736 kb on - strand at 42.769 kb on - strand at 42.769 kb on - strand at 42.813 kb on + strand at 42.878 kb on + strand at 42.905 kb on + strand at 42.905 kb on + strand at 42.909 kb on + strand at 42.909 kb on + strand at 42.934 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 40,576 + +0.6 40,576 + +0.4 40,617 + -0.1 40,621 + -1.4 40,621 + -0.4 40,621 + +0.2 40,622 - +1.2 40,624 + -0.2 40,624 + +0.3 40,634 + -0.5 40,661 - +0.3 40,661 - -0.3 40,661 - -0.0 40,664 + -1.8 40,678 - +0.3 40,777 + +0.6 40,778 - +0.0 40,960 + -0.5 40,964 + -0.6 40,970 + +1.7 41,158 + BACOVA_00542 0.22 -1.2 41,298 + BACOVA_00542 0.50 -2.0 41,387 + BACOVA_00542 0.68 -0.1 41,390 + BACOVA_00542 0.68 -0.4 41,514 + +0.3 41,514 + -0.1 41,566 + +0.4 41,789 + BACOVA_00543 0.43 -0.8 41,982 + BACOVA_00543 0.81 +2.3 42,208 + -1.6 42,275 + -0.2 42,309 + BACOVA_00544 0.34 -1.7 42,427 + BACOVA_00545 0.21 +0.6 42,452 + BACOVA_00545 0.31 -0.6 42,468 - BACOVA_00545 0.37 -1.0 42,478 + BACOVA_00545 0.41 -0.6 42,513 + BACOVA_00545 0.56 -0.4 42,524 + BACOVA_00545 0.60 -1.7 42,525 - BACOVA_00545 0.61 -0.1 42,571 + BACOVA_00545 0.79 -0.4 42,587 + BACOVA_00545 0.86 +0.4 42,645 + -0.0 42,651 + -1.4 42,670 + -0.5 42,672 + +1.6 42,687 + -0.7 42,687 + +0.3 42,691 + +0.6 42,691 + -0.2 42,713 - -0.8 42,730 - +0.2 42,734 - +1.1 42,736 - -1.0 42,769 - -1.5 42,769 - -0.4 42,813 + +0.3 42,878 + -0.4 42,905 + +0.2 42,905 + +1.0 42,909 + -0.6 42,909 + +0.1 42,934 + -0.1
Or see this region's nucleotide sequence