Experiment: BHI 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04023 and BACOVA_04024 are separated by 110 nucleotides BACOVA_04024 and BACOVA_04025 are separated by 18 nucleotides BACOVA_04025 and BACOVA_04026 are separated by 80 nucleotides BACOVA_04026 and BACOVA_04027 overlap by 64 nucleotides BACOVA_04027 and BACOVA_04028 are separated by 46 nucleotides
BACOVA_04023: BACOVA_04023 - NADH:ubiquinone oxidoreductase, D subunit, at 357,531 to 358,172
_04023
BACOVA_04024: BACOVA_04024 - NADH:ubiquinone oxidoreductase, E subunit, at 358,283 to 358,909
_04024
BACOVA_04025: BACOVA_04025 - NADH:ubiquinone oxidoreductase, F subunit, at 358,928 to 360,202
_04025
BACOVA_04026: BACOVA_04026 - hypothetical protein, at 360,283 to 360,516
_04026
BACOVA_04027: BACOVA_04027 - hypothetical protein, at 360,453 to 360,632
_04027
BACOVA_04028: BACOVA_04028 - DEAD/DEAH box helicase, at 360,679 to 362,013
_04028
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.111 kb on + strand at 358.111 kb on + strand at 358.211 kb on + strand at 358.230 kb on + strand at 358.251 kb on + strand at 358.267 kb on + strand at 360.247 kb on + strand at 360.251 kb on + strand at 360.252 kb on - strand at 360.282 kb on - strand at 360.314 kb on - strand, within BACOVA_04026 at 360.317 kb on - strand, within BACOVA_04026 at 360.324 kb on - strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.397 kb on - strand, within BACOVA_04026 at 360.404 kb on - strand, within BACOVA_04026 at 360.438 kb on - strand, within BACOVA_04026 at 360.447 kb on + strand, within BACOVA_04026 at 360.468 kb on - strand at 360.469 kb on + strand at 360.469 kb on + strand at 360.488 kb on + strand at 360.495 kb on + strand at 360.504 kb on - strand at 360.534 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.605 kb on + strand, within BACOVA_04027 at 360.606 kb on - strand, within BACOVA_04027 at 360.650 kb on + strand at 360.789 kb on + strand at 360.791 kb on + strand at 360.792 kb on - strand at 360.794 kb on + strand at 360.829 kb on + strand, within BACOVA_04028 at 360.836 kb on + strand, within BACOVA_04028 at 360.842 kb on + strand, within BACOVA_04028 at 360.850 kb on - strand, within BACOVA_04028 at 360.854 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 361.007 kb on + strand, within BACOVA_04028 at 361.164 kb on + strand, within BACOVA_04028
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media remove 358,111 + +2.0 358,111 + -2.8 358,211 + -0.3 358,230 + -0.6 358,251 + +1.3 358,267 + -0.3 360,247 + -0.6 360,251 + -0.5 360,252 - +0.1 360,282 - +0.1 360,314 - BACOVA_04026 0.13 +0.2 360,317 - BACOVA_04026 0.15 -0.5 360,324 - BACOVA_04026 0.18 +0.3 360,355 + BACOVA_04026 0.31 -1.2 360,355 + BACOVA_04026 0.31 -1.3 360,396 + BACOVA_04026 0.48 -1.3 360,396 + BACOVA_04026 0.48 -1.6 360,396 + BACOVA_04026 0.48 -1.5 360,396 + BACOVA_04026 0.48 -0.3 360,397 - BACOVA_04026 0.49 -0.1 360,404 - BACOVA_04026 0.52 -0.5 360,438 - BACOVA_04026 0.66 +2.0 360,447 + BACOVA_04026 0.70 +1.0 360,468 - -0.6 360,469 + -0.1 360,469 + -0.1 360,488 + -1.1 360,495 + -0.9 360,504 - -0.9 360,534 + BACOVA_04027 0.45 +0.5 360,603 + BACOVA_04027 0.83 -0.5 360,603 + BACOVA_04027 0.83 -0.9 360,604 - BACOVA_04027 0.84 +0.1 360,604 - BACOVA_04027 0.84 -1.2 360,604 - BACOVA_04027 0.84 -0.0 360,605 + BACOVA_04027 0.84 -0.2 360,606 - BACOVA_04027 0.85 -0.5 360,650 + +0.7 360,789 + +0.9 360,791 + +0.6 360,792 - +0.3 360,794 + +0.5 360,829 + BACOVA_04028 0.11 -1.9 360,836 + BACOVA_04028 0.12 -0.1 360,842 + BACOVA_04028 0.12 -0.9 360,850 - BACOVA_04028 0.13 +0.3 360,854 + BACOVA_04028 0.13 +1.1 360,920 + BACOVA_04028 0.18 -0.3 360,920 + BACOVA_04028 0.18 +0.7 361,007 + BACOVA_04028 0.25 +0.3 361,164 + BACOVA_04028 0.36 -0.3
Or see this region's nucleotide sequence