Experiment: BHI 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02656 and BACOVA_02657 are separated by 7 nucleotides BACOVA_02657 and BACOVA_02658 overlap by 156 nucleotides BACOVA_02658 and BACOVA_02659 are separated by 211 nucleotides BACOVA_02659 and BACOVA_02660 are separated by 200 nucleotides BACOVA_02660 and BACOVA_02661 are separated by 110 nucleotides
BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553
_02656
BACOVA_02657: BACOVA_02657 - hypothetical protein, at 57,561 to 57,782
_02657
BACOVA_02658: BACOVA_02658 - hypothetical protein, at 57,627 to 57,755
_02658
BACOVA_02659: BACOVA_02659 - glycosyl hydrolase family 3 N-terminal domain protein, at 57,967 to 60,327
_02659
BACOVA_02660: BACOVA_02660 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 60,528 to 60,848
_02660
BACOVA_02661: BACOVA_02661 - hypothetical protein, at 60,959 to 62,554
_02661
Position (kb)
57
58
59
60
61 Strain fitness (log2 ratio)
-2
-1
0
1 at 57.052 kb on + strand, within BACOVA_02656 at 57.053 kb on - strand, within BACOVA_02656 at 57.054 kb on + strand, within BACOVA_02656 at 57.054 kb on + strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.057 kb on + strand, within BACOVA_02656 at 57.058 kb on - strand, within BACOVA_02656 at 57.069 kb on - strand, within BACOVA_02656 at 57.190 kb on + strand, within BACOVA_02656 at 57.242 kb on + strand, within BACOVA_02656 at 57.243 kb on - strand, within BACOVA_02656 at 57.246 kb on + strand, within BACOVA_02656 at 57.247 kb on - strand, within BACOVA_02656 at 57.306 kb on + strand, within BACOVA_02656 at 57.309 kb on - strand, within BACOVA_02656 at 57.311 kb on + strand, within BACOVA_02656 at 57.312 kb on - strand, within BACOVA_02656 at 57.354 kb on + strand, within BACOVA_02656 at 57.391 kb on - strand, within BACOVA_02656 at 57.485 kb on - strand at 57.487 kb on + strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.654 kb on - strand at 57.657 kb on - strand at 57.702 kb on - strand at 57.722 kb on + strand at 57.746 kb on + strand at 57.810 kb on - strand at 57.816 kb on - strand at 57.816 kb on - strand at 57.816 kb on - strand at 57.840 kb on + strand at 57.840 kb on + strand at 57.850 kb on + strand at 57.863 kb on - strand at 57.880 kb on - strand at 57.923 kb on - strand at 57.939 kb on + strand at 57.940 kb on - strand at 57.959 kb on - strand at 57.990 kb on - strand at 57.990 kb on - strand at 57.992 kb on + strand at 57.992 kb on + strand at 57.992 kb on + strand at 57.993 kb on - strand at 57.993 kb on - strand at 57.995 kb on + strand at 58.068 kb on + strand at 58.175 kb on + strand at 58.228 kb on + strand, within BACOVA_02659 at 58.228 kb on + strand, within BACOVA_02659 at 58.230 kb on + strand, within BACOVA_02659 at 58.231 kb on - strand, within BACOVA_02659 at 58.235 kb on + strand, within BACOVA_02659 at 58.236 kb on - strand, within BACOVA_02659 at 58.378 kb on + strand, within BACOVA_02659 at 58.395 kb on + strand, within BACOVA_02659 at 58.471 kb on + strand, within BACOVA_02659 at 58.472 kb on - strand, within BACOVA_02659 at 58.472 kb on - strand, within BACOVA_02659 at 58.524 kb on - strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.561 kb on + strand, within BACOVA_02659 at 58.561 kb on + strand, within BACOVA_02659 at 58.562 kb on - strand, within BACOVA_02659 at 58.562 kb on - strand, within BACOVA_02659 at 58.655 kb on + strand, within BACOVA_02659 at 58.656 kb on - strand, within BACOVA_02659 at 58.656 kb on - strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.692 kb on - strand, within BACOVA_02659 at 58.741 kb on - strand, within BACOVA_02659 at 58.778 kb on + strand, within BACOVA_02659 at 58.779 kb on - strand, within BACOVA_02659 at 58.861 kb on + strand, within BACOVA_02659 at 58.921 kb on - strand, within BACOVA_02659 at 59.066 kb on + strand, within BACOVA_02659 at 59.067 kb on - strand, within BACOVA_02659 at 59.070 kb on + strand, within BACOVA_02659 at 59.093 kb on + strand, within BACOVA_02659 at 59.161 kb on + strand, within BACOVA_02659 at 59.333 kb on - strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.335 kb on - strand, within BACOVA_02659 at 59.335 kb on - strand, within BACOVA_02659 at 59.363 kb on - strand, within BACOVA_02659 at 59.374 kb on + strand, within BACOVA_02659 at 59.375 kb on - strand, within BACOVA_02659 at 59.424 kb on + strand, within BACOVA_02659 at 59.424 kb on + strand, within BACOVA_02659 at 59.425 kb on - strand, within BACOVA_02659 at 59.425 kb on - strand, within BACOVA_02659 at 59.428 kb on + strand, within BACOVA_02659 at 59.428 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.532 kb on + strand, within BACOVA_02659 at 59.532 kb on + strand, within BACOVA_02659 at 59.561 kb on - strand, within BACOVA_02659 at 59.592 kb on + strand, within BACOVA_02659 at 59.686 kb on - strand, within BACOVA_02659 at 59.686 kb on - strand, within BACOVA_02659 at 59.694 kb on + strand, within BACOVA_02659 at 59.695 kb on - strand, within BACOVA_02659 at 59.696 kb on + strand, within BACOVA_02659 at 59.697 kb on - strand, within BACOVA_02659 at 59.743 kb on + strand, within BACOVA_02659 at 59.743 kb on + strand, within BACOVA_02659 at 59.763 kb on + strand, within BACOVA_02659 at 59.763 kb on + strand, within BACOVA_02659 at 59.823 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.887 kb on + strand, within BACOVA_02659 at 59.888 kb on - strand, within BACOVA_02659 at 59.893 kb on + strand, within BACOVA_02659 at 59.894 kb on - strand, within BACOVA_02659 at 59.894 kb on - strand, within BACOVA_02659 at 59.941 kb on + strand, within BACOVA_02659 at 59.956 kb on + strand, within BACOVA_02659 at 59.957 kb on - strand, within BACOVA_02659 at 59.972 kb on + strand, within BACOVA_02659 at 59.977 kb on - strand, within BACOVA_02659 at 60.008 kb on + strand, within BACOVA_02659 at 60.008 kb on + strand, within BACOVA_02659 at 60.023 kb on + strand, within BACOVA_02659 at 60.080 kb on + strand, within BACOVA_02659 at 60.081 kb on - strand, within BACOVA_02659 at 60.268 kb on - strand at 60.273 kb on - strand at 60.312 kb on + strand at 60.347 kb on + strand at 60.349 kb on + strand at 60.350 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.448 kb on + strand at 60.460 kb on - strand at 60.474 kb on + strand at 60.475 kb on - strand at 60.475 kb on - strand at 60.488 kb on + strand at 60.491 kb on - strand at 60.491 kb on - strand at 60.503 kb on + strand at 60.520 kb on + strand at 60.520 kb on + strand at 60.527 kb on - strand at 60.546 kb on - strand at 60.546 kb on - strand at 60.599 kb on - strand, within BACOVA_02660 at 60.605 kb on + strand, within BACOVA_02660 at 60.613 kb on + strand, within BACOVA_02660 at 60.613 kb on + strand, within BACOVA_02660 at 60.614 kb on - strand, within BACOVA_02660 at 60.614 kb on - strand, within BACOVA_02660 at 60.688 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.695 kb on + strand, within BACOVA_02660 at 60.696 kb on - strand, within BACOVA_02660 at 60.696 kb on - strand, within BACOVA_02660 at 60.699 kb on + strand, within BACOVA_02660 at 60.699 kb on + strand, within BACOVA_02660 at 60.700 kb on - strand, within BACOVA_02660 at 60.700 kb on - strand, within BACOVA_02660 at 60.701 kb on + strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.820 kb on + strand at 60.830 kb on + strand at 60.840 kb on - strand at 60.865 kb on + strand at 60.865 kb on + strand at 60.885 kb on + strand at 60.885 kb on + strand at 60.893 kb on + strand at 60.894 kb on - strand at 60.896 kb on + strand at 60.896 kb on + strand at 60.918 kb on - strand at 60.942 kb on + strand at 60.961 kb on - strand at 60.982 kb on + strand at 60.983 kb on - strand at 60.983 kb on - strand at 60.983 kb on - strand at 61.069 kb on - strand at 61.092 kb on - strand at 61.092 kb on - strand at 61.109 kb on - strand at 61.139 kb on - strand, within BACOVA_02661 at 61.139 kb on - strand, within BACOVA_02661 at 61.145 kb on + strand, within BACOVA_02661 at 61.146 kb on - strand, within BACOVA_02661 at 61.155 kb on + strand, within BACOVA_02661 at 61.174 kb on + strand, within BACOVA_02661 at 61.175 kb on - strand, within BACOVA_02661 at 61.176 kb on + strand, within BACOVA_02661 at 61.177 kb on - strand, within BACOVA_02661 at 61.288 kb on + strand, within BACOVA_02661 at 61.290 kb on + strand, within BACOVA_02661 at 61.290 kb on + strand, within BACOVA_02661 at 61.294 kb on + strand, within BACOVA_02661 at 61.299 kb on - strand, within BACOVA_02661
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media remove 57,052 + BACOVA_02656 0.66 -0.2 57,053 - BACOVA_02656 0.66 -0.4 57,054 + BACOVA_02656 0.66 +0.6 57,054 + BACOVA_02656 0.66 +0.2 57,055 - BACOVA_02656 0.66 +0.2 57,055 - BACOVA_02656 0.66 -0.2 57,055 - BACOVA_02656 0.66 +0.0 57,057 + BACOVA_02656 0.66 +0.1 57,058 - BACOVA_02656 0.66 +0.6 57,069 - BACOVA_02656 0.67 +0.4 57,190 + BACOVA_02656 0.75 -0.2 57,242 + BACOVA_02656 0.79 +1.3 57,243 - BACOVA_02656 0.79 +0.2 57,246 + BACOVA_02656 0.79 -0.8 57,247 - BACOVA_02656 0.79 +0.2 57,306 + BACOVA_02656 0.83 +0.3 57,309 - BACOVA_02656 0.83 +0.4 57,311 + BACOVA_02656 0.83 -1.1 57,312 - BACOVA_02656 0.83 -0.0 57,354 + BACOVA_02656 0.86 +0.2 57,391 - BACOVA_02656 0.89 +0.6 57,485 - +0.5 57,487 + -0.6 57,530 - +1.1 57,530 - +0.6 57,530 - +0.6 57,530 - +1.3 57,654 - -0.1 57,657 - +0.9 57,702 - -0.4 57,722 + -1.1 57,746 + +0.4 57,810 - -0.2 57,816 - -0.5 57,816 - +0.3 57,816 - +0.7 57,840 + +0.3 57,840 + -0.4 57,850 + +0.0 57,863 - -0.4 57,880 - -0.3 57,923 - +0.6 57,939 + +0.1 57,940 - +0.2 57,959 - +0.4 57,990 - -0.0 57,990 - +1.1 57,992 + -0.0 57,992 + -0.3 57,992 + +0.3 57,993 - -0.9 57,993 - +0.5 57,995 + +0.2 58,068 + -0.4 58,175 + +1.0 58,228 + BACOVA_02659 0.11 +0.0 58,228 + BACOVA_02659 0.11 -1.7 58,230 + BACOVA_02659 0.11 -0.6 58,231 - BACOVA_02659 0.11 +0.0 58,235 + BACOVA_02659 0.11 -0.3 58,236 - BACOVA_02659 0.11 -0.8 58,378 + BACOVA_02659 0.17 +0.6 58,395 + BACOVA_02659 0.18 +1.1 58,471 + BACOVA_02659 0.21 +0.4 58,472 - BACOVA_02659 0.21 +0.2 58,472 - BACOVA_02659 0.21 -0.1 58,524 - BACOVA_02659 0.24 -0.1 58,548 + BACOVA_02659 0.25 +0.3 58,548 + BACOVA_02659 0.25 +0.3 58,548 + BACOVA_02659 0.25 -0.6 58,548 + BACOVA_02659 0.25 -0.4 58,561 + BACOVA_02659 0.25 +1.4 58,561 + BACOVA_02659 0.25 -1.4 58,562 - BACOVA_02659 0.25 +0.8 58,562 - BACOVA_02659 0.25 -0.8 58,655 + BACOVA_02659 0.29 +0.2 58,656 - BACOVA_02659 0.29 -0.9 58,656 - BACOVA_02659 0.29 -1.2 58,675 + BACOVA_02659 0.30 -0.4 58,675 + BACOVA_02659 0.30 -0.1 58,675 + BACOVA_02659 0.30 -0.1 58,692 - BACOVA_02659 0.31 +0.2 58,741 - BACOVA_02659 0.33 -1.1 58,778 + BACOVA_02659 0.34 +0.2 58,779 - BACOVA_02659 0.34 +0.4 58,861 + BACOVA_02659 0.38 +0.1 58,921 - BACOVA_02659 0.40 +0.4 59,066 + BACOVA_02659 0.47 -0.6 59,067 - BACOVA_02659 0.47 -0.3 59,070 + BACOVA_02659 0.47 +1.0 59,093 + BACOVA_02659 0.48 -0.7 59,161 + BACOVA_02659 0.51 +0.3 59,333 - BACOVA_02659 0.58 -0.4 59,334 + BACOVA_02659 0.58 -0.0 59,334 + BACOVA_02659 0.58 +0.4 59,334 + BACOVA_02659 0.58 -0.8 59,335 - BACOVA_02659 0.58 +0.5 59,335 - BACOVA_02659 0.58 -0.1 59,363 - BACOVA_02659 0.59 +0.1 59,374 + BACOVA_02659 0.60 -0.9 59,375 - BACOVA_02659 0.60 +0.4 59,424 + BACOVA_02659 0.62 -0.2 59,424 + BACOVA_02659 0.62 -0.2 59,425 - BACOVA_02659 0.62 -0.4 59,425 - BACOVA_02659 0.62 +0.5 59,428 + BACOVA_02659 0.62 -0.3 59,428 + BACOVA_02659 0.62 +0.2 59,446 + BACOVA_02659 0.63 -0.8 59,446 + BACOVA_02659 0.63 -0.1 59,446 + BACOVA_02659 0.63 -0.0 59,455 + BACOVA_02659 0.63 -0.4 59,455 + BACOVA_02659 0.63 -0.2 59,455 + BACOVA_02659 0.63 -1.9 59,532 + BACOVA_02659 0.66 +0.9 59,532 + BACOVA_02659 0.66 +0.1 59,561 - BACOVA_02659 0.68 +0.4 59,592 + BACOVA_02659 0.69 +0.2 59,686 - BACOVA_02659 0.73 +0.0 59,686 - BACOVA_02659 0.73 -0.5 59,694 + BACOVA_02659 0.73 -0.8 59,695 - BACOVA_02659 0.73 +0.2 59,696 + BACOVA_02659 0.73 -0.8 59,697 - BACOVA_02659 0.73 +0.4 59,743 + BACOVA_02659 0.75 -0.6 59,743 + BACOVA_02659 0.75 -0.5 59,763 + BACOVA_02659 0.76 +0.1 59,763 + BACOVA_02659 0.76 -0.3 59,823 + BACOVA_02659 0.79 +0.0 59,842 + BACOVA_02659 0.79 -1.0 59,842 + BACOVA_02659 0.79 -0.1 59,842 + BACOVA_02659 0.79 -0.6 59,887 + BACOVA_02659 0.81 +0.3 59,888 - BACOVA_02659 0.81 +1.0 59,893 + BACOVA_02659 0.82 -1.4 59,894 - BACOVA_02659 0.82 +0.6 59,894 - BACOVA_02659 0.82 -0.4 59,941 + BACOVA_02659 0.84 +0.6 59,956 + BACOVA_02659 0.84 +0.6 59,957 - BACOVA_02659 0.84 -0.7 59,972 + BACOVA_02659 0.85 +0.1 59,977 - BACOVA_02659 0.85 -0.8 60,008 + BACOVA_02659 0.86 -0.5 60,008 + BACOVA_02659 0.86 +0.1 60,023 + BACOVA_02659 0.87 -0.4 60,080 + BACOVA_02659 0.89 +0.4 60,081 - BACOVA_02659 0.90 +0.4 60,268 - +0.6 60,273 - -0.2 60,312 + -0.9 60,347 + +0.2 60,349 + -0.9 60,350 - -0.4 60,352 - +0.3 60,352 - +1.0 60,352 - +0.6 60,352 - +0.3 60,448 + -0.6 60,460 - -0.6 60,474 + -1.7 60,475 - +0.6 60,475 - -0.2 60,488 + +1.4 60,491 - +0.5 60,491 - +0.3 60,503 + -0.2 60,520 + -0.7 60,520 + -0.4 60,527 - +0.1 60,546 - -0.5 60,546 - +0.2 60,599 - BACOVA_02660 0.22 -2.4 60,605 + BACOVA_02660 0.24 +0.3 60,613 + BACOVA_02660 0.26 +0.5 60,613 + BACOVA_02660 0.26 +0.9 60,614 - BACOVA_02660 0.27 -1.2 60,614 - BACOVA_02660 0.27 +0.3 60,688 + BACOVA_02660 0.50 +0.6 60,690 + BACOVA_02660 0.50 +0.5 60,690 + BACOVA_02660 0.50 +0.0 60,690 + BACOVA_02660 0.50 +0.7 60,690 + BACOVA_02660 0.50 -1.4 60,690 + BACOVA_02660 0.50 +0.1 60,695 + BACOVA_02660 0.52 +0.4 60,696 - BACOVA_02660 0.52 +1.1 60,696 - BACOVA_02660 0.52 +1.0 60,699 + BACOVA_02660 0.53 +0.7 60,699 + BACOVA_02660 0.53 +0.7 60,700 - BACOVA_02660 0.54 -0.7 60,700 - BACOVA_02660 0.54 -0.4 60,701 + BACOVA_02660 0.54 +0.6 60,702 - BACOVA_02660 0.54 +0.5 60,702 - BACOVA_02660 0.54 +0.5 60,702 - BACOVA_02660 0.54 -0.4 60,820 + +0.6 60,830 + +0.6 60,840 - +0.8 60,865 + -0.5 60,865 + -0.4 60,885 + -1.1 60,885 + -0.4 60,893 + -0.2 60,894 - -0.5 60,896 + -0.7 60,896 + +0.4 60,918 - +0.1 60,942 + -0.2 60,961 - -0.1 60,982 + -1.4 60,983 - +0.1 60,983 - -1.1 60,983 - +1.6 61,069 - +0.9 61,092 - -0.7 61,092 - -0.3 61,109 - -0.8 61,139 - BACOVA_02661 0.11 -0.5 61,139 - BACOVA_02661 0.11 -0.4 61,145 + BACOVA_02661 0.12 +0.4 61,146 - BACOVA_02661 0.12 -0.1 61,155 + BACOVA_02661 0.12 -0.5 61,174 + BACOVA_02661 0.13 -0.1 61,175 - BACOVA_02661 0.14 -1.4 61,176 + BACOVA_02661 0.14 -0.4 61,177 - BACOVA_02661 0.14 +0.3 61,288 + BACOVA_02661 0.21 -0.0 61,290 + BACOVA_02661 0.21 -1.7 61,290 + BACOVA_02661 0.21 +0.2 61,294 + BACOVA_02661 0.21 -0.4 61,299 - BACOVA_02661 0.21 -0.4
Or see this region's nucleotide sequence