Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04922

Experiment: ABB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04921 and BACOVA_04922 are separated by 25 nucleotidesBACOVA_04922 and BACOVA_04923 are separated by 20 nucleotides BACOVA_04921: BACOVA_04921 - TonB-linked outer membrane protein, SusC/RagA family, at 331,027 to 334,242 _04921 BACOVA_04922: BACOVA_04922 - SusD family protein, at 334,268 to 336,169 _04922 BACOVA_04923: BACOVA_04923 - hypothetical protein, at 336,190 to 337,842 _04923 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 333.269 kb on + strand, within BACOVA_04921at 333.346 kb on + strand, within BACOVA_04921at 333.360 kb on + strand, within BACOVA_04921at 333.433 kb on + strand, within BACOVA_04921at 333.434 kb on - strand, within BACOVA_04921at 333.453 kb on + strand, within BACOVA_04921at 333.469 kb on + strand, within BACOVA_04921at 333.493 kb on + strand, within BACOVA_04921at 333.561 kb on - strand, within BACOVA_04921at 333.679 kb on - strand, within BACOVA_04921at 333.730 kb on + strand, within BACOVA_04921at 333.730 kb on + strand, within BACOVA_04921at 333.731 kb on - strand, within BACOVA_04921at 333.731 kb on - strand, within BACOVA_04921at 333.732 kb on + strand, within BACOVA_04921at 333.733 kb on - strand, within BACOVA_04921at 333.765 kb on + strand, within BACOVA_04921at 333.765 kb on + strand, within BACOVA_04921at 333.766 kb on - strand, within BACOVA_04921at 333.861 kb on + strand, within BACOVA_04921at 333.874 kb on - strand, within BACOVA_04921at 333.905 kb on - strand, within BACOVA_04921at 333.981 kb on + strandat 333.981 kb on + strandat 333.989 kb on - strandat 333.989 kb on - strandat 334.093 kb on + strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.132 kb on - strandat 334.187 kb on - strandat 334.210 kb on - strandat 334.213 kb on + strandat 334.215 kb on + strandat 334.274 kb on - strandat 334.281 kb on + strandat 334.282 kb on - strandat 334.287 kb on - strandat 334.307 kb on - strandat 334.377 kb on + strandat 334.377 kb on + strandat 334.422 kb on - strandat 334.526 kb on - strand, within BACOVA_04922at 334.542 kb on + strand, within BACOVA_04922at 334.542 kb on + strand, within BACOVA_04922at 334.597 kb on + strand, within BACOVA_04922at 334.597 kb on + strand, within BACOVA_04922at 334.598 kb on - strand, within BACOVA_04922at 334.617 kb on - strand, within BACOVA_04922at 334.671 kb on + strand, within BACOVA_04922at 334.706 kb on + strand, within BACOVA_04922at 334.707 kb on - strand, within BACOVA_04922at 334.707 kb on - strand, within BACOVA_04922at 334.740 kb on - strand, within BACOVA_04922at 334.770 kb on + strand, within BACOVA_04922at 334.771 kb on - strand, within BACOVA_04922at 334.869 kb on + strand, within BACOVA_04922at 334.869 kb on + strand, within BACOVA_04922at 334.870 kb on - strand, within BACOVA_04922at 334.870 kb on - strand, within BACOVA_04922at 334.875 kb on + strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.892 kb on + strand, within BACOVA_04922at 334.892 kb on + strand, within BACOVA_04922at 334.937 kb on + strand, within BACOVA_04922at 335.055 kb on - strand, within BACOVA_04922at 335.057 kb on + strand, within BACOVA_04922at 335.076 kb on - strand, within BACOVA_04922at 335.089 kb on - strand, within BACOVA_04922at 335.149 kb on + strand, within BACOVA_04922at 335.226 kb on - strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.228 kb on - strand, within BACOVA_04922at 335.230 kb on + strand, within BACOVA_04922at 335.231 kb on - strand, within BACOVA_04922at 335.282 kb on + strand, within BACOVA_04922at 335.283 kb on - strand, within BACOVA_04922at 335.283 kb on - strand, within BACOVA_04922at 335.283 kb on - strand, within BACOVA_04922at 335.286 kb on + strand, within BACOVA_04922at 335.303 kb on + strand, within BACOVA_04922at 335.310 kb on - strand, within BACOVA_04922at 335.341 kb on + strand, within BACOVA_04922at 335.360 kb on - strand, within BACOVA_04922at 335.360 kb on - strand, within BACOVA_04922at 335.435 kb on + strand, within BACOVA_04922at 335.437 kb on + strand, within BACOVA_04922at 335.437 kb on + strand, within BACOVA_04922at 335.438 kb on - strand, within BACOVA_04922at 335.438 kb on - strand, within BACOVA_04922at 335.470 kb on + strand, within BACOVA_04922at 335.471 kb on - strand, within BACOVA_04922at 335.471 kb on - strand, within BACOVA_04922at 335.473 kb on + strand, within BACOVA_04922at 335.480 kb on - strand, within BACOVA_04922at 335.490 kb on + strand, within BACOVA_04922at 335.491 kb on - strand, within BACOVA_04922at 335.491 kb on - strand, within BACOVA_04922at 335.522 kb on + strand, within BACOVA_04922at 335.522 kb on + strand, within BACOVA_04922at 335.522 kb on + strand, within BACOVA_04922at 335.523 kb on - strand, within BACOVA_04922at 335.623 kb on + strand, within BACOVA_04922at 335.624 kb on - strand, within BACOVA_04922at 335.628 kb on + strand, within BACOVA_04922at 335.654 kb on - strand, within BACOVA_04922at 335.693 kb on - strand, within BACOVA_04922at 335.717 kb on - strand, within BACOVA_04922at 335.726 kb on + strand, within BACOVA_04922at 335.746 kb on + strand, within BACOVA_04922at 335.750 kb on + strand, within BACOVA_04922at 335.761 kb on + strand, within BACOVA_04922at 335.766 kb on - strand, within BACOVA_04922at 335.775 kb on - strand, within BACOVA_04922at 335.775 kb on - strand, within BACOVA_04922at 335.817 kb on - strand, within BACOVA_04922at 335.846 kb on - strand, within BACOVA_04922at 335.846 kb on - strand, within BACOVA_04922at 335.848 kb on + strand, within BACOVA_04922at 335.853 kb on - strand, within BACOVA_04922at 335.899 kb on - strand, within BACOVA_04922at 335.911 kb on + strand, within BACOVA_04922at 335.912 kb on - strand, within BACOVA_04922at 335.921 kb on + strand, within BACOVA_04922at 335.951 kb on + strand, within BACOVA_04922at 336.026 kb on - strandat 336.049 kb on + strandat 336.050 kb on - strandat 336.082 kb on + strandat 336.126 kb on + strandat 336.155 kb on + strandat 336.156 kb on - strandat 336.190 kb on - strandat 336.276 kb on + strandat 336.277 kb on - strandat 336.317 kb on + strandat 336.364 kb on + strand, within BACOVA_04923at 336.364 kb on + strand, within BACOVA_04923at 336.457 kb on + strand, within BACOVA_04923at 336.475 kb on - strand, within BACOVA_04923at 336.497 kb on - strand, within BACOVA_04923at 336.551 kb on - strand, within BACOVA_04923at 336.678 kb on + strand, within BACOVA_04923at 336.679 kb on - strand, within BACOVA_04923at 336.681 kb on + strand, within BACOVA_04923at 336.681 kb on + strand, within BACOVA_04923at 336.681 kb on + strand, within BACOVA_04923at 336.682 kb on - strand, within BACOVA_04923at 336.682 kb on - strand, within BACOVA_04923at 336.682 kb on - strand, within BACOVA_04923at 336.683 kb on + strand, within BACOVA_04923at 336.683 kb on + strand, within BACOVA_04923at 336.684 kb on - strand, within BACOVA_04923at 336.697 kb on - strand, within BACOVA_04923at 336.724 kb on - strand, within BACOVA_04923at 336.789 kb on + strand, within BACOVA_04923at 336.789 kb on + strand, within BACOVA_04923at 336.789 kb on + strand, within BACOVA_04923at 336.796 kb on + strand, within BACOVA_04923at 336.811 kb on + strand, within BACOVA_04923at 336.811 kb on + strand, within BACOVA_04923at 336.811 kb on + strand, within BACOVA_04923at 336.847 kb on + strand, within BACOVA_04923at 336.850 kb on - strand, within BACOVA_04923at 336.850 kb on - strand, within BACOVA_04923at 336.918 kb on - strand, within BACOVA_04923at 336.974 kb on - strand, within BACOVA_04923at 336.977 kb on - strand, within BACOVA_04923at 336.998 kb on - strand, within BACOVA_04923at 337.093 kb on - strand, within BACOVA_04923at 337.108 kb on + strand, within BACOVA_04923at 337.108 kb on + strand, within BACOVA_04923at 337.109 kb on - strand, within BACOVA_04923at 337.131 kb on + strand, within BACOVA_04923at 337.161 kb on + strand, within BACOVA_04923at 337.161 kb on + strand, within BACOVA_04923at 337.162 kb on - strand, within BACOVA_04923at 337.162 kb on - strand, within BACOVA_04923at 337.162 kb on - strand, within BACOVA_04923

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media
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333,269 + BACOVA_04921 0.70 +0.4
333,346 + BACOVA_04921 0.72 +0.2
333,360 + BACOVA_04921 0.73 -1.1
333,433 + BACOVA_04921 0.75 +1.8
333,434 - BACOVA_04921 0.75 -0.3
333,453 + BACOVA_04921 0.75 -1.0
333,469 + BACOVA_04921 0.76 -1.4
333,493 + BACOVA_04921 0.77 -0.7
333,561 - BACOVA_04921 0.79 -0.1
333,679 - BACOVA_04921 0.82 +1.5
333,730 + BACOVA_04921 0.84 +0.1
333,730 + BACOVA_04921 0.84 -0.4
333,731 - BACOVA_04921 0.84 +0.8
333,731 - BACOVA_04921 0.84 -1.0
333,732 + BACOVA_04921 0.84 +0.2
333,733 - BACOVA_04921 0.84 +0.7
333,765 + BACOVA_04921 0.85 -0.6
333,765 + BACOVA_04921 0.85 +0.1
333,766 - BACOVA_04921 0.85 -0.1
333,861 + BACOVA_04921 0.88 -1.5
333,874 - BACOVA_04921 0.89 +0.1
333,905 - BACOVA_04921 0.89 -0.4
333,981 + -1.4
333,981 + -0.1
333,989 - +0.5
333,989 - -0.5
334,093 + +0.4
334,098 - +0.5
334,098 - -0.0
334,132 - +0.3
334,187 - -1.1
334,210 - -0.1
334,213 + -0.0
334,215 + +0.6
334,274 - +0.0
334,281 + +0.5
334,282 - -0.4
334,287 - +0.4
334,307 - +1.0
334,377 + -1.7
334,377 + +0.2
334,422 - -0.8
334,526 - BACOVA_04922 0.14 -1.2
334,542 + BACOVA_04922 0.14 +0.3
334,542 + BACOVA_04922 0.14 -0.4
334,597 + BACOVA_04922 0.17 -1.4
334,597 + BACOVA_04922 0.17 -0.8
334,598 - BACOVA_04922 0.17 +1.1
334,617 - BACOVA_04922 0.18 -0.3
334,671 + BACOVA_04922 0.21 +1.0
334,706 + BACOVA_04922 0.23 +0.8
334,707 - BACOVA_04922 0.23 -0.4
334,707 - BACOVA_04922 0.23 -1.3
334,740 - BACOVA_04922 0.25 -0.0
334,770 + BACOVA_04922 0.26 -0.8
334,771 - BACOVA_04922 0.26 -0.2
334,869 + BACOVA_04922 0.32 -0.2
334,869 + BACOVA_04922 0.32 -0.5
334,870 - BACOVA_04922 0.32 +0.4
334,870 - BACOVA_04922 0.32 +0.1
334,875 + BACOVA_04922 0.32 +0.5
334,876 - BACOVA_04922 0.32 +0.5
334,876 - BACOVA_04922 0.32 +0.8
334,876 - BACOVA_04922 0.32 +0.5
334,892 + BACOVA_04922 0.33 -0.9
334,892 + BACOVA_04922 0.33 +0.1
334,937 + BACOVA_04922 0.35 +0.2
335,055 - BACOVA_04922 0.41 -0.2
335,057 + BACOVA_04922 0.41 +0.4
335,076 - BACOVA_04922 0.42 -1.2
335,089 - BACOVA_04922 0.43 -0.8
335,149 + BACOVA_04922 0.46 -0.2
335,226 - BACOVA_04922 0.50 -0.2
335,227 + BACOVA_04922 0.50 +0.0
335,227 + BACOVA_04922 0.50 +0.4
335,227 + BACOVA_04922 0.50 -1.1
335,228 - BACOVA_04922 0.50 +0.6
335,230 + BACOVA_04922 0.51 -0.2
335,231 - BACOVA_04922 0.51 -0.6
335,282 + BACOVA_04922 0.53 +0.4
335,283 - BACOVA_04922 0.53 -1.0
335,283 - BACOVA_04922 0.53 +0.3
335,283 - BACOVA_04922 0.53 -2.0
335,286 + BACOVA_04922 0.54 +0.2
335,303 + BACOVA_04922 0.54 -1.2
335,310 - BACOVA_04922 0.55 -1.0
335,341 + BACOVA_04922 0.56 -0.5
335,360 - BACOVA_04922 0.57 +0.0
335,360 - BACOVA_04922 0.57 +0.5
335,435 + BACOVA_04922 0.61 -0.5
335,437 + BACOVA_04922 0.61 +1.5
335,437 + BACOVA_04922 0.61 +0.4
335,438 - BACOVA_04922 0.62 -0.8
335,438 - BACOVA_04922 0.62 -0.3
335,470 + BACOVA_04922 0.63 -1.1
335,471 - BACOVA_04922 0.63 +0.7
335,471 - BACOVA_04922 0.63 -0.5
335,473 + BACOVA_04922 0.63 +0.4
335,480 - BACOVA_04922 0.64 +0.2
335,490 + BACOVA_04922 0.64 -0.4
335,491 - BACOVA_04922 0.64 +0.1
335,491 - BACOVA_04922 0.64 -0.1
335,522 + BACOVA_04922 0.66 -1.8
335,522 + BACOVA_04922 0.66 -0.7
335,522 + BACOVA_04922 0.66 +0.4
335,523 - BACOVA_04922 0.66 -0.4
335,623 + BACOVA_04922 0.71 +1.2
335,624 - BACOVA_04922 0.71 +0.4
335,628 + BACOVA_04922 0.72 -0.4
335,654 - BACOVA_04922 0.73 +1.0
335,693 - BACOVA_04922 0.75 -0.0
335,717 - BACOVA_04922 0.76 +0.8
335,726 + BACOVA_04922 0.77 -1.7
335,746 + BACOVA_04922 0.78 +0.3
335,750 + BACOVA_04922 0.78 -0.2
335,761 + BACOVA_04922 0.78 -0.5
335,766 - BACOVA_04922 0.79 -0.3
335,775 - BACOVA_04922 0.79 -0.8
335,775 - BACOVA_04922 0.79 -0.3
335,817 - BACOVA_04922 0.81 -0.2
335,846 - BACOVA_04922 0.83 -0.2
335,846 - BACOVA_04922 0.83 -0.2
335,848 + BACOVA_04922 0.83 +0.8
335,853 - BACOVA_04922 0.83 +0.8
335,899 - BACOVA_04922 0.86 -0.2
335,911 + BACOVA_04922 0.86 -0.3
335,912 - BACOVA_04922 0.86 -0.8
335,921 + BACOVA_04922 0.87 -1.0
335,951 + BACOVA_04922 0.88 -0.6
336,026 - -0.6
336,049 + +1.2
336,050 - +1.4
336,082 + -1.4
336,126 + -0.2
336,155 + -0.4
336,156 - -0.5
336,190 - -0.5
336,276 + -0.8
336,277 - +0.6
336,317 + -0.6
336,364 + BACOVA_04923 0.11 -0.6
336,364 + BACOVA_04923 0.11 -0.8
336,457 + BACOVA_04923 0.16 -0.9
336,475 - BACOVA_04923 0.17 -0.0
336,497 - BACOVA_04923 0.19 -0.7
336,551 - BACOVA_04923 0.22 -0.9
336,678 + BACOVA_04923 0.30 -0.7
336,679 - BACOVA_04923 0.30 +0.4
336,681 + BACOVA_04923 0.30 -0.2
336,681 + BACOVA_04923 0.30 -1.2
336,681 + BACOVA_04923 0.30 -0.6
336,682 - BACOVA_04923 0.30 -0.9
336,682 - BACOVA_04923 0.30 -0.9
336,682 - BACOVA_04923 0.30 -0.4
336,683 + BACOVA_04923 0.30 +1.8
336,683 + BACOVA_04923 0.30 +0.8
336,684 - BACOVA_04923 0.30 +1.5
336,697 - BACOVA_04923 0.31 -0.2
336,724 - BACOVA_04923 0.32 +0.2
336,789 + BACOVA_04923 0.36 +0.8
336,789 + BACOVA_04923 0.36 -0.5
336,789 + BACOVA_04923 0.36 -1.1
336,796 + BACOVA_04923 0.37 -0.2
336,811 + BACOVA_04923 0.38 +0.1
336,811 + BACOVA_04923 0.38 -1.2
336,811 + BACOVA_04923 0.38 +0.1
336,847 + BACOVA_04923 0.40 -0.1
336,850 - BACOVA_04923 0.40 -0.0
336,850 - BACOVA_04923 0.40 -0.1
336,918 - BACOVA_04923 0.44 -0.2
336,974 - BACOVA_04923 0.47 +1.6
336,977 - BACOVA_04923 0.48 -0.1
336,998 - BACOVA_04923 0.49 +0.6
337,093 - BACOVA_04923 0.55 +0.2
337,108 + BACOVA_04923 0.56 +1.0
337,108 + BACOVA_04923 0.56 +0.3
337,109 - BACOVA_04923 0.56 +0.2
337,131 + BACOVA_04923 0.57 -0.3
337,161 + BACOVA_04923 0.59 -0.2
337,161 + BACOVA_04923 0.59 -0.8
337,162 - BACOVA_04923 0.59 -0.7
337,162 - BACOVA_04923 0.59 +0.4
337,162 - BACOVA_04923 0.59 -0.4

Or see this region's nucleotide sequence