Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04284

Experiment: ABB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04281 and BACOVA_04282 are separated by 4 nucleotidesBACOVA_04282 and BACOVA_04283 are separated by 8 nucleotidesBACOVA_04283 and BACOVA_04284 are separated by 450 nucleotidesBACOVA_04284 and BACOVA_04285 overlap by 8 nucleotidesBACOVA_04285 and BACOVA_04286 are separated by 3 nucleotidesBACOVA_04286 and BACOVA_04287 are separated by 128 nucleotides BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514 _04281 BACOVA_04282: BACOVA_04282 - hypothetical protein, at 170,519 to 170,665 _04282 BACOVA_04283: BACOVA_04283 - hypothetical protein, at 170,674 to 170,796 _04283 BACOVA_04284: BACOVA_04284 - hydrolase, NUDIX family, at 171,247 to 172,035 _04284 BACOVA_04285: BACOVA_04285 - cyclic nucleotide-binding domain protein, at 172,028 to 172,438 _04285 BACOVA_04286: BACOVA_04286 - hypothetical protein, at 172,442 to 172,606 _04286 BACOVA_04287: BACOVA_04287 - acyltransferase, at 172,735 to 173,742 _04287 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1 2 3at 170.248 kb on + strand, within BACOVA_04281at 170.340 kb on + strand, within BACOVA_04281at 170.347 kb on - strand, within BACOVA_04281at 170.356 kb on - strandat 170.376 kb on + strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.393 kb on + strandat 170.419 kb on - strandat 170.447 kb on + strandat 170.504 kb on + strandat 170.504 kb on + strandat 170.512 kb on + strandat 170.513 kb on - strandat 170.513 kb on - strandat 170.517 kb on + strandat 170.517 kb on + strandat 170.518 kb on - strandat 170.553 kb on + strand, within BACOVA_04282at 170.554 kb on - strand, within BACOVA_04282at 170.583 kb on + strand, within BACOVA_04282at 170.584 kb on - strand, within BACOVA_04282at 170.658 kb on + strandat 170.658 kb on + strandat 170.698 kb on - strand, within BACOVA_04283at 170.714 kb on - strand, within BACOVA_04283at 170.778 kb on + strand, within BACOVA_04283at 170.779 kb on - strand, within BACOVA_04283at 170.813 kb on - strandat 170.838 kb on - strandat 171.169 kb on + strandat 171.182 kb on - strandat 171.238 kb on - strandat 171.276 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.354 kb on + strand, within BACOVA_04284at 171.355 kb on - strand, within BACOVA_04284at 171.361 kb on - strand, within BACOVA_04284at 171.388 kb on - strand, within BACOVA_04284at 171.394 kb on - strand, within BACOVA_04284at 171.398 kb on + strand, within BACOVA_04284at 171.484 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284at 171.638 kb on + strand, within BACOVA_04284at 171.639 kb on - strand, within BACOVA_04284at 171.663 kb on - strand, within BACOVA_04284at 171.668 kb on + strand, within BACOVA_04284at 171.668 kb on + strand, within BACOVA_04284at 171.668 kb on + strand, within BACOVA_04284at 171.783 kb on - strand, within BACOVA_04284at 171.833 kb on - strand, within BACOVA_04284at 171.840 kb on + strand, within BACOVA_04284at 171.869 kb on + strand, within BACOVA_04284at 171.893 kb on - strand, within BACOVA_04284at 171.946 kb on + strand, within BACOVA_04284at 172.016 kb on + strandat 172.017 kb on - strandat 172.074 kb on - strand, within BACOVA_04285at 172.076 kb on + strand, within BACOVA_04285at 172.104 kb on + strand, within BACOVA_04285at 172.105 kb on - strand, within BACOVA_04285at 172.115 kb on + strand, within BACOVA_04285at 172.118 kb on - strand, within BACOVA_04285at 172.184 kb on + strand, within BACOVA_04285at 172.189 kb on + strand, within BACOVA_04285at 172.221 kb on + strand, within BACOVA_04285at 172.221 kb on + strand, within BACOVA_04285at 172.222 kb on - strand, within BACOVA_04285at 172.268 kb on - strand, within BACOVA_04285at 172.268 kb on - strand, within BACOVA_04285at 172.290 kb on + strand, within BACOVA_04285at 172.298 kb on - strand, within BACOVA_04285at 172.317 kb on - strand, within BACOVA_04285at 172.327 kb on - strand, within BACOVA_04285at 172.345 kb on - strand, within BACOVA_04285at 172.345 kb on - strand, within BACOVA_04285at 172.346 kb on + strand, within BACOVA_04285at 172.347 kb on - strand, within BACOVA_04285at 172.347 kb on - strand, within BACOVA_04285at 172.354 kb on - strand, within BACOVA_04285at 172.379 kb on + strand, within BACOVA_04285at 172.387 kb on + strand, within BACOVA_04285at 172.388 kb on - strand, within BACOVA_04285at 172.393 kb on - strand, within BACOVA_04285at 172.437 kb on - strandat 172.437 kb on - strandat 172.447 kb on + strandat 172.469 kb on + strand, within BACOVA_04286at 172.469 kb on + strand, within BACOVA_04286at 172.490 kb on + strand, within BACOVA_04286at 172.491 kb on - strand, within BACOVA_04286at 172.491 kb on - strand, within BACOVA_04286at 172.545 kb on - strand, within BACOVA_04286at 172.546 kb on + strand, within BACOVA_04286at 172.546 kb on + strand, within BACOVA_04286at 172.547 kb on - strand, within BACOVA_04286at 172.547 kb on - strand, within BACOVA_04286at 172.548 kb on + strand, within BACOVA_04286at 172.549 kb on - strand, within BACOVA_04286at 172.561 kb on - strand, within BACOVA_04286at 172.631 kb on + strandat 172.633 kb on + strandat 172.649 kb on + strandat 172.649 kb on + strandat 172.650 kb on - strandat 172.685 kb on + strandat 172.686 kb on - strandat 172.725 kb on - strandat 172.739 kb on + strandat 172.740 kb on - strandat 172.756 kb on + strandat 172.756 kb on + strandat 172.756 kb on + strandat 172.756 kb on + strandat 172.756 kb on + strandat 172.757 kb on - strandat 172.843 kb on - strand, within BACOVA_04287at 172.856 kb on - strand, within BACOVA_04287at 172.869 kb on - strand, within BACOVA_04287at 172.894 kb on - strand, within BACOVA_04287at 172.941 kb on + strand, within BACOVA_04287at 172.942 kb on - strand, within BACOVA_04287at 172.946 kb on + strand, within BACOVA_04287at 172.947 kb on - strand, within BACOVA_04287at 172.962 kb on + strand, within BACOVA_04287at 172.962 kb on + strand, within BACOVA_04287at 172.962 kb on + strand, within BACOVA_04287at 172.963 kb on - strand, within BACOVA_04287at 172.963 kb on - strand, within BACOVA_04287at 172.965 kb on - strand, within BACOVA_04287at 172.989 kb on + strand, within BACOVA_04287

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media
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170,248 + BACOVA_04281 0.84 +1.0
170,340 + BACOVA_04281 0.89 -1.3
170,347 - BACOVA_04281 0.90 -1.1
170,356 - +0.1
170,376 + +0.2
170,377 - -0.1
170,377 - +0.4
170,377 - -0.5
170,393 + -1.5
170,419 - +0.2
170,447 + +0.3
170,504 + -2.0
170,504 + +0.0
170,512 + +0.7
170,513 - +0.1
170,513 - -0.1
170,517 + -0.5
170,517 + +0.0
170,518 - -0.5
170,553 + BACOVA_04282 0.23 -2.0
170,554 - BACOVA_04282 0.24 -1.5
170,583 + BACOVA_04282 0.44 -0.7
170,584 - BACOVA_04282 0.44 +0.5
170,658 + -0.1
170,658 + -0.7
170,698 - BACOVA_04283 0.20 +1.0
170,714 - BACOVA_04283 0.33 -0.7
170,778 + BACOVA_04283 0.85 -0.4
170,779 - BACOVA_04283 0.85 +0.2
170,813 - -1.1
170,838 - +0.6
171,169 + +0.1
171,182 - -0.2
171,238 - +1.2
171,276 + +0.0
171,323 + -0.9
171,323 + +0.4
171,323 + -0.6
171,323 + +1.8
171,324 - +0.0
171,324 - +2.4
171,324 - -0.8
171,324 - +0.0
171,354 + BACOVA_04284 0.14 -0.5
171,355 - BACOVA_04284 0.14 -1.8
171,361 - BACOVA_04284 0.14 -1.0
171,388 - BACOVA_04284 0.18 +0.1
171,394 - BACOVA_04284 0.19 +0.5
171,398 + BACOVA_04284 0.19 -0.2
171,484 + BACOVA_04284 0.30 -0.9
171,490 + BACOVA_04284 0.31 -0.1
171,490 + BACOVA_04284 0.31 -0.4
171,491 - BACOVA_04284 0.31 -0.4
171,491 - BACOVA_04284 0.31 +0.1
171,638 + BACOVA_04284 0.50 -1.7
171,639 - BACOVA_04284 0.50 +0.4
171,663 - BACOVA_04284 0.53 -1.9
171,668 + BACOVA_04284 0.53 +2.6
171,668 + BACOVA_04284 0.53 +2.8
171,668 + BACOVA_04284 0.53 -0.8
171,783 - BACOVA_04284 0.68 -1.1
171,833 - BACOVA_04284 0.74 -0.9
171,840 + BACOVA_04284 0.75 +0.9
171,869 + BACOVA_04284 0.79 -0.3
171,893 - BACOVA_04284 0.82 -1.2
171,946 + BACOVA_04284 0.89 -0.2
172,016 + -0.1
172,017 - -0.1
172,074 - BACOVA_04285 0.11 -2.2
172,076 + BACOVA_04285 0.12 +0.2
172,104 + BACOVA_04285 0.18 +0.5
172,105 - BACOVA_04285 0.19 +1.2
172,115 + BACOVA_04285 0.21 +0.4
172,118 - BACOVA_04285 0.22 -0.1
172,184 + BACOVA_04285 0.38 -0.4
172,189 + BACOVA_04285 0.39 -1.1
172,221 + BACOVA_04285 0.47 +0.0
172,221 + BACOVA_04285 0.47 +0.0
172,222 - BACOVA_04285 0.47 +0.5
172,268 - BACOVA_04285 0.58 -1.9
172,268 - BACOVA_04285 0.58 +2.4
172,290 + BACOVA_04285 0.64 +0.0
172,298 - BACOVA_04285 0.66 -0.2
172,317 - BACOVA_04285 0.70 -0.5
172,327 - BACOVA_04285 0.73 +0.9
172,345 - BACOVA_04285 0.77 -1.0
172,345 - BACOVA_04285 0.77 +1.2
172,346 + BACOVA_04285 0.77 -1.5
172,347 - BACOVA_04285 0.78 +1.0
172,347 - BACOVA_04285 0.78 -0.8
172,354 - BACOVA_04285 0.79 -0.0
172,379 + BACOVA_04285 0.85 +1.4
172,387 + BACOVA_04285 0.87 -1.7
172,388 - BACOVA_04285 0.88 +0.6
172,393 - BACOVA_04285 0.89 -0.4
172,437 - +0.2
172,437 - +0.2
172,447 + -0.2
172,469 + BACOVA_04286 0.16 +0.1
172,469 + BACOVA_04286 0.16 -0.1
172,490 + BACOVA_04286 0.29 -0.0
172,491 - BACOVA_04286 0.30 +0.3
172,491 - BACOVA_04286 0.30 +1.6
172,545 - BACOVA_04286 0.62 +0.5
172,546 + BACOVA_04286 0.63 +0.4
172,546 + BACOVA_04286 0.63 +2.4
172,547 - BACOVA_04286 0.64 +1.5
172,547 - BACOVA_04286 0.64 -0.6
172,548 + BACOVA_04286 0.64 +0.5
172,549 - BACOVA_04286 0.65 -0.3
172,561 - BACOVA_04286 0.72 -1.3
172,631 + +0.6
172,633 + +1.0
172,649 + +0.3
172,649 + +0.1
172,650 - -0.5
172,685 + -0.0
172,686 - -0.6
172,725 - -0.6
172,739 + +0.4
172,740 - -0.4
172,756 + -0.5
172,756 + +0.4
172,756 + -0.3
172,756 + -0.5
172,756 + +1.1
172,757 - -1.8
172,843 - BACOVA_04287 0.11 +0.7
172,856 - BACOVA_04287 0.12 +0.1
172,869 - BACOVA_04287 0.13 -0.2
172,894 - BACOVA_04287 0.16 +0.3
172,941 + BACOVA_04287 0.20 -0.8
172,942 - BACOVA_04287 0.21 +0.3
172,946 + BACOVA_04287 0.21 -0.4
172,947 - BACOVA_04287 0.21 +0.3
172,962 + BACOVA_04287 0.23 -1.1
172,962 + BACOVA_04287 0.23 +1.0
172,962 + BACOVA_04287 0.23 -0.4
172,963 - BACOVA_04287 0.23 -0.6
172,963 - BACOVA_04287 0.23 +0.0
172,965 - BACOVA_04287 0.23 +0.6
172,989 + BACOVA_04287 0.25 -0.3

Or see this region's nucleotide sequence