Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04070 and BACOVA_04071 are separated by 573 nucleotides BACOVA_04071 and BACOVA_04072 are separated by 188 nucleotides BACOVA_04072 and BACOVA_04073 are separated by 21 nucleotides
BACOVA_04070: BACOVA_04070 - ParB-like protein, at 399,743 to 400,285
_04070
BACOVA_04071: BACOVA_04071 - hypothetical protein, at 400,859 to 401,008
_04071
BACOVA_04072: BACOVA_04072 - hypothetical protein, at 401,197 to 401,562
_04072
BACOVA_04073: BACOVA_04073 - hypothetical protein, at 401,584 to 402,156
_04073
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 399.894 kb on + strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.907 kb on + strand, within BACOVA_04070 at 399.924 kb on - strand, within BACOVA_04070 at 399.942 kb on - strand, within BACOVA_04070 at 399.951 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.980 kb on + strand, within BACOVA_04070 at 399.983 kb on - strand, within BACOVA_04070 at 400.081 kb on + strand, within BACOVA_04070 at 400.130 kb on - strand, within BACOVA_04070 at 400.283 kb on + strand at 400.296 kb on - strand at 400.296 kb on - strand at 400.298 kb on - strand at 400.298 kb on - strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.301 kb on + strand at 400.302 kb on - strand at 400.342 kb on - strand at 400.391 kb on - strand at 400.401 kb on + strand at 400.443 kb on - strand at 400.561 kb on + strand at 400.561 kb on + strand at 400.562 kb on - strand at 400.566 kb on - strand at 400.566 kb on - strand at 400.574 kb on + strand at 400.580 kb on - strand at 400.618 kb on - strand at 400.698 kb on - strand at 400.707 kb on - strand at 400.709 kb on - strand at 400.727 kb on - strand at 400.752 kb on + strand at 400.763 kb on - strand at 400.876 kb on + strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.880 kb on + strand, within BACOVA_04071 at 400.936 kb on + strand, within BACOVA_04071 at 400.937 kb on - strand, within BACOVA_04071 at 400.954 kb on + strand, within BACOVA_04071 at 400.969 kb on + strand, within BACOVA_04071 at 400.969 kb on + strand, within BACOVA_04071 at 400.972 kb on + strand, within BACOVA_04071 at 400.973 kb on - strand, within BACOVA_04071 at 400.973 kb on - strand, within BACOVA_04071 at 400.976 kb on + strand, within BACOVA_04071 at 400.976 kb on + strand, within BACOVA_04071 at 400.977 kb on - strand, within BACOVA_04071 at 401.023 kb on + strand at 401.023 kb on + strand at 401.081 kb on + strand at 401.081 kb on + strand at 401.081 kb on + strand at 401.082 kb on - strand at 401.086 kb on + strand at 401.087 kb on - strand at 401.087 kb on - strand at 401.091 kb on - strand at 401.100 kb on + strand at 401.100 kb on + strand at 401.100 kb on + strand at 401.172 kb on - strand at 401.172 kb on - strand at 401.215 kb on - strand at 401.215 kb on - strand at 401.251 kb on - strand, within BACOVA_04072 at 401.291 kb on + strand, within BACOVA_04072 at 401.294 kb on - strand, within BACOVA_04072 at 401.360 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.419 kb on - strand, within BACOVA_04072 at 401.423 kb on + strand, within BACOVA_04072 at 401.424 kb on - strand, within BACOVA_04072 at 401.425 kb on + strand, within BACOVA_04072 at 401.425 kb on + strand, within BACOVA_04072 at 401.426 kb on - strand, within BACOVA_04072 at 401.426 kb on - strand, within BACOVA_04072 at 401.427 kb on + strand, within BACOVA_04072 at 401.428 kb on - strand, within BACOVA_04072 at 401.428 kb on - strand, within BACOVA_04072 at 401.431 kb on - strand, within BACOVA_04072 at 401.447 kb on + strand, within BACOVA_04072 at 401.474 kb on + strand, within BACOVA_04072 at 401.474 kb on + strand, within BACOVA_04072 at 401.475 kb on - strand, within BACOVA_04072 at 401.475 kb on - strand, within BACOVA_04072 at 401.517 kb on + strand, within BACOVA_04072 at 401.565 kb on - strand at 401.582 kb on - strand at 401.582 kb on - strand at 401.598 kb on + strand at 401.601 kb on - strand at 401.609 kb on + strand at 401.609 kb on + strand at 401.677 kb on + strand, within BACOVA_04073 at 401.678 kb on - strand, within BACOVA_04073 at 401.728 kb on - strand, within BACOVA_04073 at 401.758 kb on - strand, within BACOVA_04073 at 401.804 kb on + strand, within BACOVA_04073 at 401.888 kb on + strand, within BACOVA_04073 at 401.889 kb on - strand, within BACOVA_04073 at 401.889 kb on - strand, within BACOVA_04073 at 401.926 kb on - strand, within BACOVA_04073 at 401.926 kb on - strand, within BACOVA_04073 at 401.934 kb on + strand, within BACOVA_04073 at 401.935 kb on - strand, within BACOVA_04073 at 401.951 kb on - strand, within BACOVA_04073 at 401.976 kb on - strand, within BACOVA_04073
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 399,894 + BACOVA_04070 0.28 +0.6 399,894 + BACOVA_04070 0.28 +0.3 399,895 - BACOVA_04070 0.28 +0.2 399,895 - BACOVA_04070 0.28 -0.0 399,895 - BACOVA_04070 0.28 -0.8 399,899 + BACOVA_04070 0.29 -0.2 399,899 + BACOVA_04070 0.29 +0.4 399,899 + BACOVA_04070 0.29 +0.4 399,903 - BACOVA_04070 0.29 -0.6 399,903 - BACOVA_04070 0.29 +0.1 399,907 + BACOVA_04070 0.30 -0.2 399,924 - BACOVA_04070 0.33 +0.7 399,942 - BACOVA_04070 0.37 -0.0 399,951 - BACOVA_04070 0.38 +0.4 399,953 - BACOVA_04070 0.39 -0.2 399,953 - BACOVA_04070 0.39 -0.3 399,980 + BACOVA_04070 0.44 -1.2 399,983 - BACOVA_04070 0.44 +0.1 400,081 + BACOVA_04070 0.62 -0.2 400,130 - BACOVA_04070 0.71 +0.3 400,283 + +0.7 400,296 - +0.0 400,296 - -0.2 400,298 - -0.7 400,298 - +0.7 400,299 + +0.8 400,299 + -1.5 400,299 + -0.2 400,301 + -0.1 400,302 - -0.2 400,342 - +0.2 400,391 - -0.5 400,401 + -0.5 400,443 - +0.0 400,561 + -1.2 400,561 + -0.3 400,562 - +0.6 400,566 - +0.0 400,566 - -0.3 400,574 + -0.7 400,580 - +0.8 400,618 - -0.9 400,698 - +0.3 400,707 - +0.0 400,709 - +0.3 400,727 - +0.5 400,752 + -0.3 400,763 - +1.1 400,876 + BACOVA_04071 0.11 -0.3 400,879 - BACOVA_04071 0.13 -0.7 400,879 - BACOVA_04071 0.13 -0.5 400,879 - BACOVA_04071 0.13 -1.3 400,880 + BACOVA_04071 0.14 -0.5 400,936 + BACOVA_04071 0.51 +0.1 400,937 - BACOVA_04071 0.52 +0.8 400,954 + BACOVA_04071 0.63 -0.5 400,969 + BACOVA_04071 0.73 -0.5 400,969 + BACOVA_04071 0.73 -1.0 400,972 + BACOVA_04071 0.75 -1.1 400,973 - BACOVA_04071 0.76 -1.5 400,973 - BACOVA_04071 0.76 +0.0 400,976 + BACOVA_04071 0.78 +0.8 400,976 + BACOVA_04071 0.78 +0.6 400,977 - BACOVA_04071 0.79 -0.7 401,023 + -0.2 401,023 + -0.3 401,081 + -0.4 401,081 + +1.2 401,081 + +0.0 401,082 - +0.5 401,086 + -0.2 401,087 - +1.2 401,087 - -0.4 401,091 - -0.2 401,100 + -0.7 401,100 + +0.0 401,100 + -1.2 401,172 - +0.4 401,172 - -1.6 401,215 - -0.4 401,215 - -1.7 401,251 - BACOVA_04072 0.15 -0.8 401,291 + BACOVA_04072 0.26 -0.6 401,294 - BACOVA_04072 0.27 +0.5 401,360 - BACOVA_04072 0.45 +0.5 401,386 - BACOVA_04072 0.52 -0.5 401,386 - BACOVA_04072 0.52 +0.8 401,386 - BACOVA_04072 0.52 +0.4 401,419 - BACOVA_04072 0.61 -1.0 401,423 + BACOVA_04072 0.62 -0.5 401,424 - BACOVA_04072 0.62 -0.2 401,425 + BACOVA_04072 0.62 -0.9 401,425 + BACOVA_04072 0.62 -2.0 401,426 - BACOVA_04072 0.63 +2.4 401,426 - BACOVA_04072 0.63 -1.0 401,427 + BACOVA_04072 0.63 +2.7 401,428 - BACOVA_04072 0.63 -0.2 401,428 - BACOVA_04072 0.63 +0.6 401,431 - BACOVA_04072 0.64 -1.3 401,447 + BACOVA_04072 0.68 +0.5 401,474 + BACOVA_04072 0.76 -0.9 401,474 + BACOVA_04072 0.76 +0.3 401,475 - BACOVA_04072 0.76 -0.3 401,475 - BACOVA_04072 0.76 +0.8 401,517 + BACOVA_04072 0.87 +0.4 401,565 - +0.2 401,582 - +2.8 401,582 - +1.5 401,598 + -0.2 401,601 - -0.7 401,609 + +2.8 401,609 + +0.0 401,677 + BACOVA_04073 0.16 -0.3 401,678 - BACOVA_04073 0.16 -2.0 401,728 - BACOVA_04073 0.25 -0.2 401,758 - BACOVA_04073 0.30 -0.9 401,804 + BACOVA_04073 0.38 -0.2 401,888 + BACOVA_04073 0.53 -0.9 401,889 - BACOVA_04073 0.53 -0.2 401,889 - BACOVA_04073 0.53 -1.0 401,926 - BACOVA_04073 0.60 -0.4 401,926 - BACOVA_04073 0.60 -1.4 401,934 + BACOVA_04073 0.61 -0.7 401,935 - BACOVA_04073 0.61 +0.2 401,951 - BACOVA_04073 0.64 -0.4 401,976 - BACOVA_04073 0.68 +0.2
Or see this region's nucleotide sequence