Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04067 and BACOVA_04068 are separated by 112 nucleotides BACOVA_04068 and BACOVA_04069 are separated by 3 nucleotides BACOVA_04069 and BACOVA_04070 overlap by 4 nucleotides
BACOVA_04067: BACOVA_04067 - hypothetical protein, at 397,511 to 397,918
_04067
BACOVA_04068: BACOVA_04068 - hypothetical protein, at 398,031 to 398,438
_04068
BACOVA_04069: BACOVA_04069 - phosphoadenosine phosphosulfate reductase family protein, at 398,442 to 399,746
_04069
BACOVA_04070: BACOVA_04070 - ParB-like protein, at 399,743 to 400,285
_04070
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 397.447 kb on + strand at 397.478 kb on + strand at 397.479 kb on - strand at 397.479 kb on - strand at 397.479 kb on - strand at 397.490 kb on + strand at 397.490 kb on + strand at 397.490 kb on + strand at 397.491 kb on - strand at 397.492 kb on + strand at 397.493 kb on - strand at 397.495 kb on - strand at 397.495 kb on - strand at 397.495 kb on - strand at 397.510 kb on - strand at 397.524 kb on + strand at 397.524 kb on + strand at 397.525 kb on - strand at 397.565 kb on + strand, within BACOVA_04067 at 397.566 kb on - strand, within BACOVA_04067 at 397.588 kb on - strand, within BACOVA_04067 at 397.643 kb on + strand, within BACOVA_04067 at 397.669 kb on - strand, within BACOVA_04067 at 397.678 kb on - strand, within BACOVA_04067 at 397.709 kb on - strand, within BACOVA_04067 at 397.731 kb on - strand, within BACOVA_04067 at 397.787 kb on - strand, within BACOVA_04067 at 397.857 kb on - strand, within BACOVA_04067 at 397.860 kb on + strand, within BACOVA_04067 at 397.876 kb on - strand, within BACOVA_04067 at 397.947 kb on + strand at 397.948 kb on - strand at 397.969 kb on - strand at 398.030 kb on + strand at 398.031 kb on - strand at 398.044 kb on + strand at 398.051 kb on - strand at 398.072 kb on - strand, within BACOVA_04068 at 398.130 kb on + strand, within BACOVA_04068 at 398.154 kb on + strand, within BACOVA_04068 at 398.155 kb on - strand, within BACOVA_04068 at 398.181 kb on - strand, within BACOVA_04068 at 398.248 kb on - strand, within BACOVA_04068 at 398.319 kb on - strand, within BACOVA_04068 at 398.356 kb on + strand, within BACOVA_04068 at 398.357 kb on - strand, within BACOVA_04068 at 398.363 kb on + strand, within BACOVA_04068 at 398.431 kb on - strand at 398.436 kb on + strand at 398.476 kb on + strand at 398.476 kb on + strand at 398.477 kb on - strand at 398.477 kb on - strand at 398.478 kb on + strand at 398.507 kb on + strand at 398.513 kb on + strand at 398.526 kb on - strand at 398.528 kb on + strand at 398.528 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.531 kb on - strand at 398.531 kb on - strand at 398.531 kb on - strand at 398.532 kb on + strand at 398.533 kb on - strand at 398.533 kb on - strand at 398.552 kb on + strand at 398.577 kb on - strand, within BACOVA_04069 at 398.577 kb on - strand, within BACOVA_04069 at 398.589 kb on + strand, within BACOVA_04069 at 398.590 kb on - strand, within BACOVA_04069 at 398.590 kb on - strand, within BACOVA_04069 at 398.615 kb on - strand, within BACOVA_04069 at 398.641 kb on - strand, within BACOVA_04069 at 398.654 kb on + strand, within BACOVA_04069 at 398.670 kb on + strand, within BACOVA_04069 at 398.671 kb on - strand, within BACOVA_04069 at 398.671 kb on - strand, within BACOVA_04069 at 398.674 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.713 kb on + strand, within BACOVA_04069 at 398.761 kb on - strand, within BACOVA_04069 at 398.801 kb on + strand, within BACOVA_04069 at 398.803 kb on + strand, within BACOVA_04069 at 398.803 kb on + strand, within BACOVA_04069 at 398.804 kb on - strand, within BACOVA_04069 at 398.858 kb on + strand, within BACOVA_04069 at 398.862 kb on - strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.912 kb on + strand, within BACOVA_04069 at 398.912 kb on + strand, within BACOVA_04069 at 398.913 kb on - strand, within BACOVA_04069 at 398.957 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.988 kb on - strand, within BACOVA_04069 at 398.988 kb on - strand, within BACOVA_04069 at 398.991 kb on + strand, within BACOVA_04069 at 398.992 kb on - strand, within BACOVA_04069 at 398.993 kb on + strand, within BACOVA_04069 at 398.994 kb on - strand, within BACOVA_04069 at 399.016 kb on - strand, within BACOVA_04069 at 399.021 kb on - strand, within BACOVA_04069 at 399.025 kb on - strand, within BACOVA_04069 at 399.025 kb on - strand, within BACOVA_04069 at 399.027 kb on - strand, within BACOVA_04069 at 399.060 kb on - strand, within BACOVA_04069 at 399.060 kb on - strand, within BACOVA_04069 at 399.071 kb on + strand, within BACOVA_04069 at 399.075 kb on + strand, within BACOVA_04069 at 399.097 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.130 kb on - strand, within BACOVA_04069 at 399.140 kb on - strand, within BACOVA_04069 at 399.150 kb on + strand, within BACOVA_04069 at 399.151 kb on - strand, within BACOVA_04069 at 399.151 kb on - strand, within BACOVA_04069 at 399.153 kb on + strand, within BACOVA_04069 at 399.251 kb on + strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.304 kb on - strand, within BACOVA_04069 at 399.304 kb on - strand, within BACOVA_04069 at 399.311 kb on + strand, within BACOVA_04069 at 399.312 kb on - strand, within BACOVA_04069 at 399.356 kb on + strand, within BACOVA_04069 at 399.356 kb on + strand, within BACOVA_04069 at 399.357 kb on - strand, within BACOVA_04069 at 399.357 kb on - strand, within BACOVA_04069 at 399.537 kb on - strand, within BACOVA_04069 at 399.540 kb on + strand, within BACOVA_04069 at 399.573 kb on + strand, within BACOVA_04069 at 399.618 kb on + strand at 399.620 kb on + strand at 399.639 kb on - strand at 399.644 kb on + strand at 399.644 kb on + strand at 399.701 kb on + strand at 399.701 kb on + strand at 399.716 kb on + strand at 399.726 kb on + strand at 399.736 kb on + strand at 399.755 kb on - strand at 399.755 kb on - strand at 399.767 kb on + strand at 399.800 kb on + strand, within BACOVA_04070 at 399.801 kb on - strand, within BACOVA_04070 at 399.813 kb on - strand, within BACOVA_04070 at 399.813 kb on - strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.907 kb on + strand, within BACOVA_04070 at 399.924 kb on - strand, within BACOVA_04070 at 399.942 kb on - strand, within BACOVA_04070 at 399.951 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.980 kb on + strand, within BACOVA_04070 at 399.983 kb on - strand, within BACOVA_04070 at 400.081 kb on + strand, within BACOVA_04070 at 400.130 kb on - strand, within BACOVA_04070 at 400.283 kb on + strand at 400.296 kb on - strand at 400.296 kb on - strand at 400.298 kb on - strand at 400.298 kb on - strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.301 kb on + strand at 400.302 kb on - strand at 400.342 kb on - strand at 400.391 kb on - strand at 400.401 kb on + strand at 400.443 kb on - strand at 400.561 kb on + strand at 400.561 kb on + strand at 400.562 kb on - strand at 400.566 kb on - strand at 400.566 kb on - strand at 400.574 kb on + strand at 400.580 kb on - strand at 400.618 kb on - strand at 400.698 kb on - strand at 400.707 kb on - strand at 400.709 kb on - strand at 400.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 397,447 + +0.3 397,478 + +0.8 397,479 - -0.5 397,479 - -0.5 397,479 - +0.3 397,490 + +1.1 397,490 + +1.2 397,490 + -0.5 397,491 - +0.4 397,492 + +0.1 397,493 - -0.7 397,495 - +0.3 397,495 - -0.2 397,495 - -0.4 397,510 - +0.3 397,524 + -0.5 397,524 + +0.0 397,525 - +0.1 397,565 + BACOVA_04067 0.13 -1.6 397,566 - BACOVA_04067 0.13 -0.4 397,588 - BACOVA_04067 0.19 +0.4 397,643 + BACOVA_04067 0.32 -0.0 397,669 - BACOVA_04067 0.39 -2.5 397,678 - BACOVA_04067 0.41 -1.2 397,709 - BACOVA_04067 0.49 +0.3 397,731 - BACOVA_04067 0.54 -1.0 397,787 - BACOVA_04067 0.68 +0.5 397,857 - BACOVA_04067 0.85 -0.6 397,860 + BACOVA_04067 0.86 -1.2 397,876 - BACOVA_04067 0.89 -0.3 397,947 + +0.8 397,948 - -0.2 397,969 - +0.5 398,030 + -1.2 398,031 - +0.8 398,044 + +1.5 398,051 - +0.3 398,072 - BACOVA_04068 0.10 +1.4 398,130 + BACOVA_04068 0.24 +0.6 398,154 + BACOVA_04068 0.30 +1.8 398,155 - BACOVA_04068 0.30 +0.7 398,181 - BACOVA_04068 0.37 -0.2 398,248 - BACOVA_04068 0.53 +1.1 398,319 - BACOVA_04068 0.71 -1.5 398,356 + BACOVA_04068 0.80 -0.5 398,357 - BACOVA_04068 0.80 +0.6 398,363 + BACOVA_04068 0.81 -0.2 398,431 - -1.0 398,436 + -1.2 398,476 + +0.3 398,476 + -1.2 398,477 - +0.2 398,477 - -2.7 398,478 + -0.0 398,507 + +1.4 398,513 + +1.2 398,526 - +0.8 398,528 + -0.3 398,528 + -1.6 398,530 + +0.8 398,530 + -0.4 398,530 + -0.2 398,530 + +0.7 398,530 + +0.6 398,531 - +2.4 398,531 - -1.1 398,531 - +0.8 398,532 + -0.3 398,533 - -0.0 398,533 - -0.6 398,552 + +1.4 398,577 - BACOVA_04069 0.10 +0.8 398,577 - BACOVA_04069 0.10 +1.0 398,589 + BACOVA_04069 0.11 +0.6 398,590 - BACOVA_04069 0.11 +0.6 398,590 - BACOVA_04069 0.11 -1.0 398,615 - BACOVA_04069 0.13 +1.8 398,641 - BACOVA_04069 0.15 +0.4 398,654 + BACOVA_04069 0.16 +0.4 398,670 + BACOVA_04069 0.17 +0.8 398,671 - BACOVA_04069 0.18 -0.5 398,671 - BACOVA_04069 0.18 -0.2 398,674 + BACOVA_04069 0.18 -0.7 398,696 + BACOVA_04069 0.19 -0.5 398,696 + BACOVA_04069 0.19 +0.1 398,696 + BACOVA_04069 0.19 +1.0 398,713 + BACOVA_04069 0.21 +0.4 398,761 - BACOVA_04069 0.24 -0.3 398,801 + BACOVA_04069 0.28 -1.4 398,803 + BACOVA_04069 0.28 +0.8 398,803 + BACOVA_04069 0.28 +0.3 398,804 - BACOVA_04069 0.28 +0.4 398,858 + BACOVA_04069 0.32 +0.7 398,862 - BACOVA_04069 0.32 +1.3 398,908 + BACOVA_04069 0.36 +1.3 398,908 + BACOVA_04069 0.36 +0.0 398,908 + BACOVA_04069 0.36 -0.4 398,908 + BACOVA_04069 0.36 -0.4 398,912 + BACOVA_04069 0.36 +0.0 398,912 + BACOVA_04069 0.36 +1.4 398,913 - BACOVA_04069 0.36 -0.2 398,957 + BACOVA_04069 0.39 +0.3 398,987 + BACOVA_04069 0.42 +0.8 398,987 + BACOVA_04069 0.42 -0.5 398,987 + BACOVA_04069 0.42 +0.8 398,987 + BACOVA_04069 0.42 +0.8 398,988 - BACOVA_04069 0.42 -0.9 398,988 - BACOVA_04069 0.42 -0.0 398,991 + BACOVA_04069 0.42 +0.2 398,992 - BACOVA_04069 0.42 +0.5 398,993 + BACOVA_04069 0.42 +0.6 398,994 - BACOVA_04069 0.42 -0.4 399,016 - BACOVA_04069 0.44 +0.4 399,021 - BACOVA_04069 0.44 -0.3 399,025 - BACOVA_04069 0.45 -1.2 399,025 - BACOVA_04069 0.45 -0.2 399,027 - BACOVA_04069 0.45 +0.3 399,060 - BACOVA_04069 0.47 +0.4 399,060 - BACOVA_04069 0.47 +0.6 399,071 + BACOVA_04069 0.48 -1.5 399,075 + BACOVA_04069 0.49 -0.7 399,097 + BACOVA_04069 0.50 -0.2 399,129 + BACOVA_04069 0.53 +0.2 399,129 + BACOVA_04069 0.53 +0.4 399,129 + BACOVA_04069 0.53 -0.7 399,130 - BACOVA_04069 0.53 +0.2 399,140 - BACOVA_04069 0.53 +1.0 399,150 + BACOVA_04069 0.54 +0.4 399,151 - BACOVA_04069 0.54 +1.2 399,151 - BACOVA_04069 0.54 +0.3 399,153 + BACOVA_04069 0.54 +0.4 399,251 + BACOVA_04069 0.62 -0.5 399,300 - BACOVA_04069 0.66 -0.2 399,300 - BACOVA_04069 0.66 -0.5 399,300 - BACOVA_04069 0.66 +0.0 399,303 + BACOVA_04069 0.66 +0.1 399,303 + BACOVA_04069 0.66 +0.4 399,303 + BACOVA_04069 0.66 -0.5 399,304 - BACOVA_04069 0.66 +1.0 399,304 - BACOVA_04069 0.66 +0.0 399,311 + BACOVA_04069 0.67 +1.4 399,312 - BACOVA_04069 0.67 -0.2 399,356 + BACOVA_04069 0.70 +0.7 399,356 + BACOVA_04069 0.70 -0.3 399,357 - BACOVA_04069 0.70 +0.1 399,357 - BACOVA_04069 0.70 -0.5 399,537 - BACOVA_04069 0.84 +0.4 399,540 + BACOVA_04069 0.84 +0.0 399,573 + BACOVA_04069 0.87 +1.8 399,618 + -1.5 399,620 + +2.8 399,639 - -0.7 399,644 + -2.5 399,644 + -1.2 399,701 + -0.2 399,701 + -0.2 399,716 + +0.8 399,726 + +1.4 399,736 + -0.2 399,755 - +0.8 399,755 - -1.2 399,767 + -0.3 399,800 + BACOVA_04070 0.10 -1.2 399,801 - BACOVA_04070 0.11 +0.8 399,813 - BACOVA_04070 0.13 -0.2 399,813 - BACOVA_04070 0.13 +0.2 399,894 + BACOVA_04070 0.28 +0.6 399,894 + BACOVA_04070 0.28 +0.3 399,895 - BACOVA_04070 0.28 +0.2 399,895 - BACOVA_04070 0.28 -0.0 399,895 - BACOVA_04070 0.28 -0.8 399,899 + BACOVA_04070 0.29 -0.2 399,899 + BACOVA_04070 0.29 +0.4 399,899 + BACOVA_04070 0.29 +0.4 399,903 - BACOVA_04070 0.29 -0.6 399,903 - BACOVA_04070 0.29 +0.1 399,907 + BACOVA_04070 0.30 -0.2 399,924 - BACOVA_04070 0.33 +0.7 399,942 - BACOVA_04070 0.37 -0.0 399,951 - BACOVA_04070 0.38 +0.4 399,953 - BACOVA_04070 0.39 -0.2 399,953 - BACOVA_04070 0.39 -0.3 399,980 + BACOVA_04070 0.44 -1.2 399,983 - BACOVA_04070 0.44 +0.1 400,081 + BACOVA_04070 0.62 -0.2 400,130 - BACOVA_04070 0.71 +0.3 400,283 + +0.7 400,296 - +0.0 400,296 - -0.2 400,298 - -0.7 400,298 - +0.7 400,299 + +0.8 400,299 + -1.5 400,299 + -0.2 400,301 + -0.1 400,302 - -0.2 400,342 - +0.2 400,391 - -0.5 400,401 + -0.5 400,443 - +0.0 400,561 + -1.2 400,561 + -0.3 400,562 - +0.6 400,566 - +0.0 400,566 - -0.3 400,574 + -0.7 400,580 - +0.8 400,618 - -0.9 400,698 - +0.3 400,707 - +0.0 400,709 - +0.3 400,727 - +0.5
Or see this region's nucleotide sequence