Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02946 and BACOVA_02947 overlap by 1 nucleotides BACOVA_02947 and BACOVA_02948 are separated by 58 nucleotides
BACOVA_02946: BACOVA_02946 - SusD family protein, at 16,807 to 18,492
_02946
BACOVA_02947: BACOVA_02947 - hypothetical protein, at 18,492 to 19,907
_02947
BACOVA_02948: BACOVA_02948 - hypothetical protein, at 19,966 to 21,432
_02948
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.512 kb on + strand, within BACOVA_02946 at 17.529 kb on + strand, within BACOVA_02946 at 17.552 kb on - strand, within BACOVA_02946 at 17.552 kb on - strand, within BACOVA_02946 at 17.564 kb on - strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.605 kb on + strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.610 kb on + strand, within BACOVA_02946 at 17.610 kb on + strand, within BACOVA_02946 at 17.611 kb on - strand, within BACOVA_02946 at 17.611 kb on - strand, within BACOVA_02946 at 17.620 kb on + strand, within BACOVA_02946 at 17.620 kb on + strand, within BACOVA_02946 at 17.621 kb on - strand, within BACOVA_02946 at 17.621 kb on - strand, within BACOVA_02946 at 17.624 kb on - strand, within BACOVA_02946 at 17.640 kb on + strand, within BACOVA_02946 at 17.640 kb on + strand, within BACOVA_02946 at 17.644 kb on + strand, within BACOVA_02946 at 17.644 kb on + strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.665 kb on + strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.869 kb on + strand, within BACOVA_02946 at 17.926 kb on - strand, within BACOVA_02946 at 17.926 kb on - strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.930 kb on - strand, within BACOVA_02946 at 17.930 kb on - strand, within BACOVA_02946 at 17.972 kb on - strand, within BACOVA_02946 at 17.972 kb on - strand, within BACOVA_02946 at 17.976 kb on + strand, within BACOVA_02946 at 17.977 kb on - strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.104 kb on + strand, within BACOVA_02946 at 18.105 kb on - strand, within BACOVA_02946 at 18.105 kb on - strand, within BACOVA_02946 at 18.116 kb on - strand, within BACOVA_02946 at 18.132 kb on - strand, within BACOVA_02946 at 18.190 kb on - strand, within BACOVA_02946 at 18.248 kb on + strand, within BACOVA_02946 at 18.249 kb on - strand, within BACOVA_02946 at 18.257 kb on + strand, within BACOVA_02946 at 18.287 kb on - strand, within BACOVA_02946 at 18.301 kb on - strand, within BACOVA_02946 at 18.321 kb on + strand, within BACOVA_02946 at 18.322 kb on - strand, within BACOVA_02946 at 18.322 kb on - strand, within BACOVA_02946 at 18.328 kb on + strand at 18.328 kb on + strand at 18.340 kb on - strand at 18.377 kb on - strand at 18.384 kb on + strand at 18.385 kb on - strand at 18.395 kb on - strand at 18.438 kb on - strand at 18.491 kb on - strand at 18.506 kb on + strand at 18.517 kb on + strand at 18.518 kb on - strand at 18.546 kb on + strand at 18.546 kb on + strand at 18.546 kb on + strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.550 kb on + strand at 18.550 kb on + strand at 18.551 kb on - strand at 18.551 kb on - strand at 18.599 kb on + strand at 18.600 kb on - strand at 18.600 kb on - strand at 18.629 kb on + strand at 18.644 kb on + strand, within BACOVA_02947 at 18.704 kb on + strand, within BACOVA_02947 at 18.738 kb on + strand, within BACOVA_02947 at 18.738 kb on + strand, within BACOVA_02947 at 18.741 kb on - strand, within BACOVA_02947 at 18.741 kb on - strand, within BACOVA_02947 at 18.764 kb on - strand, within BACOVA_02947 at 18.845 kb on + strand, within BACOVA_02947 at 18.845 kb on + strand, within BACOVA_02947 at 18.846 kb on - strand, within BACOVA_02947 at 18.851 kb on - strand, within BACOVA_02947 at 18.890 kb on - strand, within BACOVA_02947 at 18.893 kb on + strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 19.057 kb on - strand, within BACOVA_02947 at 19.058 kb on + strand, within BACOVA_02947 at 19.127 kb on - strand, within BACOVA_02947 at 19.206 kb on - strand, within BACOVA_02947 at 19.229 kb on - strand, within BACOVA_02947 at 19.237 kb on - strand, within BACOVA_02947 at 19.238 kb on + strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.263 kb on - strand, within BACOVA_02947 at 19.313 kb on + strand, within BACOVA_02947 at 19.404 kb on - strand, within BACOVA_02947 at 19.416 kb on - strand, within BACOVA_02947 at 19.484 kb on - strand, within BACOVA_02947 at 19.488 kb on + strand, within BACOVA_02947 at 19.488 kb on + strand, within BACOVA_02947 at 19.489 kb on - strand, within BACOVA_02947 at 19.490 kb on + strand, within BACOVA_02947 at 19.501 kb on - strand, within BACOVA_02947 at 19.520 kb on + strand, within BACOVA_02947 at 19.520 kb on + strand, within BACOVA_02947 at 19.521 kb on - strand, within BACOVA_02947 at 19.521 kb on - strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.526 kb on + strand, within BACOVA_02947 at 19.527 kb on - strand, within BACOVA_02947 at 19.567 kb on - strand, within BACOVA_02947 at 19.568 kb on + strand, within BACOVA_02947 at 19.569 kb on - strand, within BACOVA_02947 at 19.605 kb on + strand, within BACOVA_02947 at 19.605 kb on + strand, within BACOVA_02947 at 19.606 kb on - strand, within BACOVA_02947 at 19.606 kb on - strand, within BACOVA_02947 at 19.695 kb on + strand, within BACOVA_02947 at 19.696 kb on - strand, within BACOVA_02947 at 19.696 kb on - strand, within BACOVA_02947 at 19.709 kb on - strand, within BACOVA_02947 at 19.728 kb on - strand, within BACOVA_02947 at 19.770 kb on + strand at 19.854 kb on - strand at 19.859 kb on - strand at 19.862 kb on + strand at 19.886 kb on - strand at 19.906 kb on - strand at 19.906 kb on - strand at 19.922 kb on + strand at 19.948 kb on - strand at 19.953 kb on + strand at 19.953 kb on + strand at 19.953 kb on + strand at 19.954 kb on - strand at 19.954 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.959 kb on + strand at 19.961 kb on + strand at 19.962 kb on - strand at 19.962 kb on - strand at 19.962 kb on - strand at 19.975 kb on + strand at 19.976 kb on - strand at 19.976 kb on - strand at 19.981 kb on - strand at 19.981 kb on - strand at 20.068 kb on - strand at 20.241 kb on + strand, within BACOVA_02948 at 20.256 kb on + strand, within BACOVA_02948 at 20.257 kb on - strand, within BACOVA_02948 at 20.326 kb on + strand, within BACOVA_02948 at 20.359 kb on - strand, within BACOVA_02948 at 20.360 kb on + strand, within BACOVA_02948 at 20.360 kb on + strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.428 kb on - strand, within BACOVA_02948 at 20.431 kb on - strand, within BACOVA_02948 at 20.435 kb on - strand, within BACOVA_02948 at 20.445 kb on + strand, within BACOVA_02948 at 20.447 kb on - strand, within BACOVA_02948 at 20.510 kb on + strand, within BACOVA_02948 at 20.520 kb on + strand, within BACOVA_02948 at 20.521 kb on - strand, within BACOVA_02948 at 20.588 kb on - strand, within BACOVA_02948 at 20.594 kb on - strand, within BACOVA_02948 at 20.658 kb on + strand, within BACOVA_02948 at 20.696 kb on + strand, within BACOVA_02948 at 20.696 kb on + strand, within BACOVA_02948 at 20.739 kb on + strand, within BACOVA_02948 at 20.740 kb on - strand, within BACOVA_02948 at 20.742 kb on - strand, within BACOVA_02948 at 20.792 kb on - strand, within BACOVA_02948 at 20.796 kb on + strand, within BACOVA_02948 at 20.797 kb on - strand, within BACOVA_02948 at 20.797 kb on - strand, within BACOVA_02948 at 20.802 kb on - strand, within BACOVA_02948 at 20.808 kb on - strand, within BACOVA_02948 at 20.861 kb on + strand, within BACOVA_02948 at 20.884 kb on - strand, within BACOVA_02948 at 20.884 kb on - strand, within BACOVA_02948 at 20.886 kb on + strand, within BACOVA_02948
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 17,512 + BACOVA_02946 0.42 +0.5 17,529 + BACOVA_02946 0.43 -0.8 17,552 - BACOVA_02946 0.44 -1.2 17,552 - BACOVA_02946 0.44 +0.5 17,564 - BACOVA_02946 0.45 -0.1 17,573 + BACOVA_02946 0.45 +0.6 17,573 + BACOVA_02946 0.45 +0.1 17,573 + BACOVA_02946 0.45 -0.1 17,573 + BACOVA_02946 0.45 +0.5 17,574 - BACOVA_02946 0.45 -0.0 17,574 - BACOVA_02946 0.45 +0.8 17,574 - BACOVA_02946 0.45 +0.2 17,605 + BACOVA_02946 0.47 -0.2 17,609 - BACOVA_02946 0.48 -0.3 17,609 - BACOVA_02946 0.48 +0.6 17,609 - BACOVA_02946 0.48 -0.1 17,609 - BACOVA_02946 0.48 +1.0 17,609 - BACOVA_02946 0.48 +0.2 17,609 - BACOVA_02946 0.48 +0.7 17,610 + BACOVA_02946 0.48 -0.6 17,610 + BACOVA_02946 0.48 +0.8 17,611 - BACOVA_02946 0.48 +0.6 17,611 - BACOVA_02946 0.48 +0.2 17,620 + BACOVA_02946 0.48 -0.2 17,620 + BACOVA_02946 0.48 +0.8 17,621 - BACOVA_02946 0.48 -0.9 17,621 - BACOVA_02946 0.48 +0.1 17,624 - BACOVA_02946 0.48 +2.1 17,640 + BACOVA_02946 0.49 -1.0 17,640 + BACOVA_02946 0.49 +0.0 17,644 + BACOVA_02946 0.50 -2.2 17,644 + BACOVA_02946 0.50 -1.5 17,645 - BACOVA_02946 0.50 -0.6 17,645 - BACOVA_02946 0.50 +0.2 17,645 - BACOVA_02946 0.50 +0.8 17,665 + BACOVA_02946 0.51 -2.3 17,743 - BACOVA_02946 0.56 +0.8 17,743 - BACOVA_02946 0.56 -0.4 17,743 - BACOVA_02946 0.56 -0.3 17,781 + BACOVA_02946 0.58 +0.1 17,781 + BACOVA_02946 0.58 +0.8 17,781 + BACOVA_02946 0.58 +0.0 17,869 + BACOVA_02946 0.63 -0.8 17,926 - BACOVA_02946 0.66 +0.1 17,926 - BACOVA_02946 0.66 +0.5 17,929 + BACOVA_02946 0.67 +0.2 17,929 + BACOVA_02946 0.67 -0.6 17,929 + BACOVA_02946 0.67 +0.8 17,929 + BACOVA_02946 0.67 +0.2 17,930 - BACOVA_02946 0.67 +0.9 17,930 - BACOVA_02946 0.67 +0.6 17,972 - BACOVA_02946 0.69 +1.1 17,972 - BACOVA_02946 0.69 -0.2 17,976 + BACOVA_02946 0.69 -0.9 17,977 - BACOVA_02946 0.69 +0.2 18,080 + BACOVA_02946 0.76 -0.6 18,080 + BACOVA_02946 0.76 +0.4 18,080 + BACOVA_02946 0.76 -2.2 18,104 + BACOVA_02946 0.77 +2.4 18,105 - BACOVA_02946 0.77 -0.6 18,105 - BACOVA_02946 0.77 -0.1 18,116 - BACOVA_02946 0.78 +0.2 18,132 - BACOVA_02946 0.79 +0.3 18,190 - BACOVA_02946 0.82 -0.2 18,248 + BACOVA_02946 0.85 -0.9 18,249 - BACOVA_02946 0.86 -1.1 18,257 + BACOVA_02946 0.86 -0.5 18,287 - BACOVA_02946 0.88 +0.2 18,301 - BACOVA_02946 0.89 -0.3 18,321 + BACOVA_02946 0.90 -1.3 18,322 - BACOVA_02946 0.90 -0.2 18,322 - BACOVA_02946 0.90 +0.1 18,328 + -1.1 18,328 + +1.3 18,340 - +0.4 18,377 - +0.7 18,384 + -0.6 18,385 - -0.2 18,395 - +0.1 18,438 - -0.3 18,491 - -0.1 18,506 + -0.6 18,517 + -0.6 18,518 - +0.4 18,546 + -0.4 18,546 + -0.2 18,546 + -0.0 18,547 - +1.0 18,547 - +0.1 18,547 - +0.6 18,547 - -0.3 18,550 + -0.5 18,550 + +1.2 18,551 - +0.7 18,551 - +0.5 18,599 + -0.4 18,600 - -0.9 18,600 - -0.7 18,629 + +0.0 18,644 + BACOVA_02947 0.11 +0.0 18,704 + BACOVA_02947 0.15 +0.3 18,738 + BACOVA_02947 0.17 -0.2 18,738 + BACOVA_02947 0.17 -0.2 18,741 - BACOVA_02947 0.18 +0.6 18,741 - BACOVA_02947 0.18 -1.1 18,764 - BACOVA_02947 0.19 -0.6 18,845 + BACOVA_02947 0.25 -0.8 18,845 + BACOVA_02947 0.25 -0.4 18,846 - BACOVA_02947 0.25 -0.9 18,851 - BACOVA_02947 0.25 -0.3 18,890 - BACOVA_02947 0.28 +0.4 18,893 + BACOVA_02947 0.28 +1.4 18,894 - BACOVA_02947 0.28 +0.2 18,894 - BACOVA_02947 0.28 -0.5 18,894 - BACOVA_02947 0.28 +0.5 18,894 - BACOVA_02947 0.28 +0.4 18,894 - BACOVA_02947 0.28 -0.4 19,057 - BACOVA_02947 0.40 -0.9 19,058 + BACOVA_02947 0.40 -0.2 19,127 - BACOVA_02947 0.45 +0.1 19,206 - BACOVA_02947 0.50 +2.1 19,229 - BACOVA_02947 0.52 -0.2 19,237 - BACOVA_02947 0.53 +0.3 19,238 + BACOVA_02947 0.53 +0.2 19,239 - BACOVA_02947 0.53 +0.5 19,239 - BACOVA_02947 0.53 -1.8 19,239 - BACOVA_02947 0.53 -0.2 19,263 - BACOVA_02947 0.54 +0.5 19,313 + BACOVA_02947 0.58 +0.2 19,404 - BACOVA_02947 0.64 +0.5 19,416 - BACOVA_02947 0.65 +0.0 19,484 - BACOVA_02947 0.70 -0.2 19,488 + BACOVA_02947 0.70 -1.0 19,488 + BACOVA_02947 0.70 -1.2 19,489 - BACOVA_02947 0.70 +0.3 19,490 + BACOVA_02947 0.70 -0.5 19,501 - BACOVA_02947 0.71 -1.0 19,520 + BACOVA_02947 0.73 -0.2 19,520 + BACOVA_02947 0.73 +1.4 19,521 - BACOVA_02947 0.73 +0.8 19,521 - BACOVA_02947 0.73 +0.3 19,524 + BACOVA_02947 0.73 +0.8 19,524 + BACOVA_02947 0.73 -0.2 19,524 + BACOVA_02947 0.73 -1.8 19,526 + BACOVA_02947 0.73 +0.1 19,527 - BACOVA_02947 0.73 +0.2 19,567 - BACOVA_02947 0.76 -0.4 19,568 + BACOVA_02947 0.76 -0.2 19,569 - BACOVA_02947 0.76 +0.2 19,605 + BACOVA_02947 0.79 -0.2 19,605 + BACOVA_02947 0.79 -1.0 19,606 - BACOVA_02947 0.79 +0.0 19,606 - BACOVA_02947 0.79 +0.9 19,695 + BACOVA_02947 0.85 -2.4 19,696 - BACOVA_02947 0.85 +0.6 19,696 - BACOVA_02947 0.85 -0.8 19,709 - BACOVA_02947 0.86 -1.1 19,728 - BACOVA_02947 0.87 +1.2 19,770 + +1.1 19,854 - -0.8 19,859 - -0.2 19,862 + +0.2 19,886 - +0.3 19,906 - -1.1 19,906 - +0.1 19,922 + +0.5 19,948 - -0.3 19,953 + -0.2 19,953 + -0.6 19,953 + +0.4 19,954 - +2.4 19,954 - -0.3 19,958 - +0.3 19,958 - +0.3 19,958 - -0.7 19,959 + -0.3 19,961 + +0.6 19,962 - +0.9 19,962 - +0.2 19,962 - +1.0 19,975 + -0.5 19,976 - +0.2 19,976 - -0.4 19,981 - -0.2 19,981 - +1.8 20,068 - +0.2 20,241 + BACOVA_02948 0.19 +0.7 20,256 + BACOVA_02948 0.20 +0.2 20,257 - BACOVA_02948 0.20 +0.3 20,326 + BACOVA_02948 0.25 +0.1 20,359 - BACOVA_02948 0.27 -0.5 20,360 + BACOVA_02948 0.27 +0.7 20,360 + BACOVA_02948 0.27 -0.5 20,361 - BACOVA_02948 0.27 +0.1 20,361 - BACOVA_02948 0.27 -0.0 20,361 - BACOVA_02948 0.27 -0.6 20,428 - BACOVA_02948 0.31 +1.7 20,431 - BACOVA_02948 0.32 +1.0 20,435 - BACOVA_02948 0.32 +0.5 20,445 + BACOVA_02948 0.33 +0.2 20,447 - BACOVA_02948 0.33 +0.8 20,510 + BACOVA_02948 0.37 -0.2 20,520 + BACOVA_02948 0.38 -0.7 20,521 - BACOVA_02948 0.38 -1.8 20,588 - BACOVA_02948 0.42 +0.2 20,594 - BACOVA_02948 0.43 -1.5 20,658 + BACOVA_02948 0.47 -0.3 20,696 + BACOVA_02948 0.50 +1.6 20,696 + BACOVA_02948 0.50 -0.8 20,739 + BACOVA_02948 0.53 -0.3 20,740 - BACOVA_02948 0.53 -0.8 20,742 - BACOVA_02948 0.53 -0.4 20,792 - BACOVA_02948 0.56 +0.6 20,796 + BACOVA_02948 0.57 +1.8 20,797 - BACOVA_02948 0.57 -0.9 20,797 - BACOVA_02948 0.57 -0.2 20,802 - BACOVA_02948 0.57 +1.1 20,808 - BACOVA_02948 0.57 +0.6 20,861 + BACOVA_02948 0.61 -0.7 20,884 - BACOVA_02948 0.63 +0.2 20,884 - BACOVA_02948 0.63 +0.1 20,886 + BACOVA_02948 0.63 +0.6
Or see this region's nucleotide sequence