Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02155 and A4249_RS16865 overlap by 4 nucleotides A4249_RS16865 and A4249_RS16870 are separated by 4 nucleotides A4249_RS16870 and A4249_RS02165 are separated by 226 nucleotides A4249_RS02165 and A4249_RS02170 overlap by 11 nucleotides
A4249_RS02155: A4249_RS02155 - cytochrome c oxidase assembly protein, at 453,332 to 453,973
_RS02155
A4249_RS16865: A4249_RS16865 - cytochrome b, at 453,970 to 454,689
_RS16865
A4249_RS16870: A4249_RS16870 - c-type cytochrome, at 454,694 to 455,161
_RS16870
A4249_RS02165: A4249_RS02165 - c-type cytochrome, at 455,388 to 455,786
_RS02165
A4249_RS02170: A4249_RS02170 - cytochrome c oxidase subunit II, at 455,776 to 456,753
_RS02170
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.806 kb on + strand, within A4249_RS02155 at 453.807 kb on - strand, within A4249_RS02155 at 453.807 kb on - strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 454.033 kb on + strand at 454.148 kb on - strand, within A4249_RS16865 at 454.148 kb on - strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.285 kb on + strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.286 kb on - strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.294 kb on + strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.295 kb on - strand, within A4249_RS16865 at 454.427 kb on + strand, within A4249_RS16865 at 454.427 kb on + strand, within A4249_RS16865 at 454.427 kb on + strand, within A4249_RS16865 at 454.427 kb on + strand, within A4249_RS16865 at 454.428 kb on - strand, within A4249_RS16865 at 454.428 kb on - strand, within A4249_RS16865 at 454.428 kb on - strand, within A4249_RS16865 at 454.428 kb on - strand, within A4249_RS16865 at 454.481 kb on + strand, within A4249_RS16865 at 454.481 kb on + strand, within A4249_RS16865 at 454.482 kb on - strand, within A4249_RS16865 at 454.655 kb on + strand at 454.656 kb on - strand at 454.764 kb on + strand, within A4249_RS16870 at 454.764 kb on + strand, within A4249_RS16870 at 454.765 kb on - strand, within A4249_RS16870 at 454.765 kb on - strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.878 kb on + strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.879 kb on - strand, within A4249_RS16870 at 454.941 kb on + strand, within A4249_RS16870 at 454.941 kb on + strand, within A4249_RS16870 at 454.941 kb on + strand, within A4249_RS16870 at 454.941 kb on + strand, within A4249_RS16870 at 454.941 kb on + strand, within A4249_RS16870 at 454.942 kb on - strand, within A4249_RS16870 at 454.944 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.028 kb on + strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.029 kb on - strand, within A4249_RS16870 at 455.052 kb on + strand, within A4249_RS16870 at 455.053 kb on - strand, within A4249_RS16870 at 455.053 kb on - strand, within A4249_RS16870 at 455.288 kb on + strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.289 kb on - strand at 455.289 kb on - strand at 455.289 kb on - strand at 455.304 kb on + strand at 455.304 kb on + strand at 455.605 kb on + strand, within A4249_RS02165 at 455.760 kb on + strand at 455.761 kb on - strand at 455.761 kb on - strand at 455.761 kb on - strand at 455.766 kb on + strand at 455.766 kb on + strand at 455.766 kb on + strand at 455.766 kb on + strand at 455.766 kb on + strand at 455.767 kb on - strand at 455.767 kb on - strand at 455.767 kb on - strand at 455.767 kb on - strand at 455.767 kb on - strand at 456.017 kb on + strand, within A4249_RS02170 at 456.018 kb on - strand, within A4249_RS02170 at 456.034 kb on + strand, within A4249_RS02170 at 456.034 kb on + strand, within A4249_RS02170 at 456.130 kb on + strand, within A4249_RS02170 at 456.131 kb on - strand, within A4249_RS02170
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 453,806 + A4249_RS02155 0.74 -0.6 453,807 - A4249_RS02155 0.74 -1.0 453,807 - A4249_RS02155 0.74 -0.2 453,821 + A4249_RS02155 0.76 -1.5 453,821 + A4249_RS02155 0.76 +0.5 453,821 + A4249_RS02155 0.76 -1.8 453,905 + A4249_RS02155 0.89 -0.2 453,905 + A4249_RS02155 0.89 +0.4 453,905 + A4249_RS02155 0.89 -0.7 453,905 + A4249_RS02155 0.89 -1.3 453,905 + A4249_RS02155 0.89 -1.3 453,905 + A4249_RS02155 0.89 +0.8 453,906 - A4249_RS02155 0.89 -0.5 453,906 - A4249_RS02155 0.89 -0.9 453,906 - A4249_RS02155 0.89 +1.3 453,906 - A4249_RS02155 0.89 +0.1 453,906 - A4249_RS02155 0.89 -0.1 453,906 - A4249_RS02155 0.89 +0.8 453,906 - A4249_RS02155 0.89 +0.2 453,906 - A4249_RS02155 0.89 -0.7 454,033 + -0.4 454,148 - A4249_RS16865 0.25 +0.5 454,148 - A4249_RS16865 0.25 -0.2 454,285 + A4249_RS16865 0.44 +0.1 454,285 + A4249_RS16865 0.44 -0.6 454,285 + A4249_RS16865 0.44 -1.2 454,285 + A4249_RS16865 0.44 -0.8 454,285 + A4249_RS16865 0.44 -0.6 454,285 + A4249_RS16865 0.44 +1.1 454,285 + A4249_RS16865 0.44 -0.4 454,285 + A4249_RS16865 0.44 +0.2 454,285 + A4249_RS16865 0.44 -0.0 454,286 - A4249_RS16865 0.44 -0.5 454,286 - A4249_RS16865 0.44 +2.7 454,286 - A4249_RS16865 0.44 +0.6 454,286 - A4249_RS16865 0.44 -1.7 454,286 - A4249_RS16865 0.44 +0.0 454,286 - A4249_RS16865 0.44 +0.7 454,286 - A4249_RS16865 0.44 -0.5 454,286 - A4249_RS16865 0.44 +0.9 454,286 - A4249_RS16865 0.44 +0.1 454,286 - A4249_RS16865 0.44 +0.5 454,294 + A4249_RS16865 0.45 +0.4 454,294 + A4249_RS16865 0.45 +0.1 454,294 + A4249_RS16865 0.45 -0.4 454,294 + A4249_RS16865 0.45 +0.5 454,294 + A4249_RS16865 0.45 -1.2 454,294 + A4249_RS16865 0.45 -0.1 454,295 - A4249_RS16865 0.45 +0.2 454,295 - A4249_RS16865 0.45 +1.0 454,295 - A4249_RS16865 0.45 +0.6 454,295 - A4249_RS16865 0.45 -1.0 454,295 - A4249_RS16865 0.45 -1.4 454,295 - A4249_RS16865 0.45 -2.0 454,295 - A4249_RS16865 0.45 +0.2 454,295 - A4249_RS16865 0.45 +0.2 454,295 - A4249_RS16865 0.45 -0.1 454,295 - A4249_RS16865 0.45 +1.0 454,427 + A4249_RS16865 0.63 -0.5 454,427 + A4249_RS16865 0.63 -0.9 454,427 + A4249_RS16865 0.63 +1.4 454,427 + A4249_RS16865 0.63 -0.4 454,428 - A4249_RS16865 0.64 -0.6 454,428 - A4249_RS16865 0.64 -0.9 454,428 - A4249_RS16865 0.64 -1.0 454,428 - A4249_RS16865 0.64 +0.2 454,481 + A4249_RS16865 0.71 +1.3 454,481 + A4249_RS16865 0.71 -0.5 454,482 - A4249_RS16865 0.71 -0.6 454,655 + +0.3 454,656 - -0.3 454,764 + A4249_RS16870 0.15 -0.5 454,764 + A4249_RS16870 0.15 +0.4 454,765 - A4249_RS16870 0.15 -0.4 454,765 - A4249_RS16870 0.15 -0.2 454,878 + A4249_RS16870 0.39 -0.3 454,878 + A4249_RS16870 0.39 -0.5 454,878 + A4249_RS16870 0.39 -0.7 454,878 + A4249_RS16870 0.39 -0.8 454,878 + A4249_RS16870 0.39 +0.2 454,878 + A4249_RS16870 0.39 -0.3 454,878 + A4249_RS16870 0.39 +1.6 454,878 + A4249_RS16870 0.39 +0.3 454,878 + A4249_RS16870 0.39 -0.1 454,879 - A4249_RS16870 0.40 -0.2 454,879 - A4249_RS16870 0.40 -0.6 454,879 - A4249_RS16870 0.40 -0.0 454,879 - A4249_RS16870 0.40 +0.6 454,879 - A4249_RS16870 0.40 -1.2 454,879 - A4249_RS16870 0.40 -0.4 454,941 + A4249_RS16870 0.53 -1.0 454,941 + A4249_RS16870 0.53 -0.5 454,941 + A4249_RS16870 0.53 -0.4 454,941 + A4249_RS16870 0.53 -0.1 454,941 + A4249_RS16870 0.53 +0.2 454,942 - A4249_RS16870 0.53 -0.0 454,944 + A4249_RS16870 0.53 -0.8 455,028 + A4249_RS16870 0.71 -0.4 455,028 + A4249_RS16870 0.71 +0.9 455,028 + A4249_RS16870 0.71 -0.4 455,028 + A4249_RS16870 0.71 -0.1 455,028 + A4249_RS16870 0.71 -0.7 455,028 + A4249_RS16870 0.71 -1.3 455,028 + A4249_RS16870 0.71 +1.1 455,029 - A4249_RS16870 0.72 +0.9 455,029 - A4249_RS16870 0.72 +0.0 455,029 - A4249_RS16870 0.72 +0.4 455,029 - A4249_RS16870 0.72 +1.3 455,029 - A4249_RS16870 0.72 +0.9 455,029 - A4249_RS16870 0.72 -0.9 455,029 - A4249_RS16870 0.72 -0.2 455,029 - A4249_RS16870 0.72 +0.1 455,052 + A4249_RS16870 0.76 -0.2 455,053 - A4249_RS16870 0.77 -0.9 455,053 - A4249_RS16870 0.77 +0.7 455,288 + +1.0 455,288 + -0.1 455,288 + +0.3 455,289 - -0.3 455,289 - -0.7 455,289 - -0.8 455,304 + +0.0 455,304 + +0.5 455,605 + A4249_RS02165 0.54 -0.2 455,760 + +0.7 455,761 - -0.2 455,761 - +0.1 455,761 - +0.1 455,766 + +0.0 455,766 + -0.4 455,766 + +0.4 455,766 + -0.0 455,766 + +0.1 455,767 - -1.7 455,767 - -0.6 455,767 - -0.4 455,767 - -0.7 455,767 - -0.6 456,017 + A4249_RS02170 0.25 -0.2 456,018 - A4249_RS02170 0.25 +0.9 456,034 + A4249_RS02170 0.26 -0.0 456,034 + A4249_RS02170 0.26 +0.1 456,130 + A4249_RS02170 0.36 -1.6 456,131 - A4249_RS02170 0.36 +0.6
Or see this region's nucleotide sequence