Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15355 and A4249_RS15360 are separated by 144 nucleotides A4249_RS15360 and A4249_RS15365 are separated by 29 nucleotides
A4249_RS15355: A4249_RS15355 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,109,946 to 3,112,372
_RS15355
A4249_RS15360: A4249_RS15360 - DNA replication/repair protein RecF, at 3,112,517 to 3,113,638
_RS15360
A4249_RS15365: A4249_RS15365 - DNA polymerase III subunit beta, at 3,113,668 to 3,114,786
_RS15365
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-1
0
1
2 at 3112.472 kb on + strand at 3112.472 kb on + strand at 3112.472 kb on + strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.475 kb on - strand at 3112.518 kb on + strand at 3112.519 kb on - strand at 3112.519 kb on - strand at 3112.550 kb on + strand at 3112.550 kb on + strand at 3112.551 kb on - strand at 3113.301 kb on + strand, within A4249_RS15360 at 3113.301 kb on + strand, within A4249_RS15360 at 3113.302 kb on - strand, within A4249_RS15360 at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.601 kb on + strand at 3113.602 kb on - strand at 3113.602 kb on - strand at 3113.602 kb on - strand at 3113.602 kb on - strand at 3113.650 kb on - strand at 3113.669 kb on + strand at 3113.669 kb on + strand at 3113.669 kb on + strand at 3113.669 kb on + strand at 3113.669 kb on + strand at 3113.670 kb on - strand at 3113.670 kb on - strand at 3113.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 3,112,472 + -0.4 3,112,472 + -1.0 3,112,472 + -0.3 3,112,473 - -0.1 3,112,473 - -0.4 3,112,473 - -0.5 3,112,473 - +0.4 3,112,474 + +0.3 3,112,474 + +1.2 3,112,474 + -0.7 3,112,474 + -0.4 3,112,475 - -0.1 3,112,518 + +0.2 3,112,519 - +1.1 3,112,519 - +0.6 3,112,550 + +1.0 3,112,550 + -1.1 3,112,551 - +0.7 3,113,301 + A4249_RS15360 0.70 -0.4 3,113,301 + A4249_RS15360 0.70 -1.5 3,113,302 - A4249_RS15360 0.70 -0.3 3,113,601 + +0.1 3,113,601 + -1.2 3,113,601 + -0.4 3,113,601 + -0.5 3,113,601 + +2.1 3,113,601 + +0.2 3,113,601 + +1.1 3,113,602 - -1.3 3,113,602 - +0.0 3,113,602 - -0.1 3,113,602 - +0.1 3,113,650 - -0.4 3,113,669 + +0.4 3,113,669 + +0.1 3,113,669 + -0.6 3,113,669 + -0.2 3,113,669 + +1.7 3,113,670 - -0.5 3,113,670 - -0.5 3,113,670 - -0.2
Or see this region's nucleotide sequence