Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14775

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14770 and A4249_RS14775 are separated by 102 nucleotidesA4249_RS14775 and A4249_RS14780 overlap by 4 nucleotidesA4249_RS14780 and A4249_RS14785 are separated by 203 nucleotides A4249_RS14770: A4249_RS14770 - sensor histidine kinase, at 2,991,160 to 2,992,854 _RS14770 A4249_RS14775: A4249_RS14775 - sigma-70 family RNA polymerase sigma factor, at 2,992,957 to 2,993,568 _RS14775 A4249_RS14780: A4249_RS14780 - NepR family anti-sigma factor, at 2,993,565 to 2,993,765 _RS14780 A4249_RS14785: A4249_RS14785 - response regulator, at 2,993,969 to 2,994,763 _RS14785 Position (kb) 2992 2993 2994Strain fitness (log2 ratio) -2 -1 0 1at 2993.142 kb on - strand, within A4249_RS14775at 2993.324 kb on + strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.381 kb on + strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.604 kb on + strand, within A4249_RS14780at 2993.605 kb on - strand, within A4249_RS14780at 2993.605 kb on - strand, within A4249_RS14780at 2993.658 kb on - strand, within A4249_RS14780at 2993.658 kb on - strand, within A4249_RS14780at 2993.766 kb on - strandat 2993.766 kb on - strandat 2993.766 kb on - strandat 2993.766 kb on - strandat 2993.856 kb on + strandat 2993.857 kb on - strandat 2993.857 kb on - strandat 2993.863 kb on - strandat 2993.907 kb on + strandat 2993.908 kb on - strandat 2993.916 kb on + strandat 2993.916 kb on + strandat 2993.917 kb on - strandat 2993.917 kb on - strandat 2993.962 kb on + strandat 2993.962 kb on + strandat 2993.962 kb on + strandat 2993.963 kb on - strandat 2993.963 kb on - strandat 2994.005 kb on + strandat 2994.005 kb on + strandat 2994.005 kb on + strandat 2994.006 kb on - strandat 2994.006 kb on - strandat 2994.006 kb on - strandat 2994.006 kb on - strandat 2994.006 kb on - strandat 2994.017 kb on + strandat 2994.018 kb on - strandat 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.059 kb on + strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.060 kb on - strand, within A4249_RS14785at 2994.115 kb on + strand, within A4249_RS14785at 2994.116 kb on - strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.137 kb on + strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785at 2994.138 kb on - strand, within A4249_RS14785

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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2,993,142 - A4249_RS14775 0.30 +0.0
2,993,324 + A4249_RS14775 0.60 +0.1
2,993,325 - A4249_RS14775 0.60 +0.0
2,993,325 - A4249_RS14775 0.60 -0.1
2,993,325 - A4249_RS14775 0.60 +0.0
2,993,325 - A4249_RS14775 0.60 -0.1
2,993,325 - A4249_RS14775 0.60 +0.1
2,993,325 - A4249_RS14775 0.60 +0.1
2,993,381 + A4249_RS14775 0.69 +0.0
2,993,382 - A4249_RS14775 0.69 -0.1
2,993,382 - A4249_RS14775 0.69 -0.1
2,993,382 - A4249_RS14775 0.69 +0.3
2,993,604 + A4249_RS14780 0.19 +0.1
2,993,605 - A4249_RS14780 0.20 -0.4
2,993,605 - A4249_RS14780 0.20 +0.2
2,993,658 - A4249_RS14780 0.46 -0.6
2,993,658 - A4249_RS14780 0.46 -0.5
2,993,766 - +0.5
2,993,766 - +0.8
2,993,766 - -0.5
2,993,766 - -0.3
2,993,856 + -0.6
2,993,857 - +0.2
2,993,857 - -0.4
2,993,863 - +0.1
2,993,907 + +0.1
2,993,908 - -0.0
2,993,916 + +0.5
2,993,916 + -0.6
2,993,917 - +0.0
2,993,917 - -0.0
2,993,962 + -0.3
2,993,962 + -0.0
2,993,962 + +0.2
2,993,963 - +0.6
2,993,963 - +0.2
2,994,005 + +0.3
2,994,005 + +0.2
2,994,005 + +0.2
2,994,006 - +0.2
2,994,006 - +0.0
2,994,006 - +0.1
2,994,006 - +0.1
2,994,006 - +0.2
2,994,017 + +0.2
2,994,018 - -0.2
2,994,059 + A4249_RS14785 0.11 +0.3
2,994,059 + A4249_RS14785 0.11 -0.1
2,994,059 + A4249_RS14785 0.11 +0.5
2,994,059 + A4249_RS14785 0.11 -0.0
2,994,059 + A4249_RS14785 0.11 -2.1
2,994,059 + A4249_RS14785 0.11 +0.0
2,994,059 + A4249_RS14785 0.11 +0.3
2,994,059 + A4249_RS14785 0.11 +0.5
2,994,059 + A4249_RS14785 0.11 +0.1
2,994,059 + A4249_RS14785 0.11 +0.0
2,994,059 + A4249_RS14785 0.11 +0.2
2,994,059 + A4249_RS14785 0.11 -0.0
2,994,059 + A4249_RS14785 0.11 +0.2
2,994,059 + A4249_RS14785 0.11 +0.4
2,994,059 + A4249_RS14785 0.11 +0.2
2,994,059 + A4249_RS14785 0.11 +0.0
2,994,059 + A4249_RS14785 0.11 +0.2
2,994,059 + A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 +0.2
2,994,060 - A4249_RS14785 0.11 +0.2
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 -0.1
2,994,060 - A4249_RS14785 0.11 +0.2
2,994,060 - A4249_RS14785 0.11 +0.3
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 -0.1
2,994,060 - A4249_RS14785 0.11 +0.2
2,994,060 - A4249_RS14785 0.11 -0.1
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,060 - A4249_RS14785 0.11 +0.5
2,994,060 - A4249_RS14785 0.11 +0.1
2,994,115 + A4249_RS14785 0.18 +0.2
2,994,116 - A4249_RS14785 0.18 +0.0
2,994,137 + A4249_RS14785 0.21 +0.1
2,994,137 + A4249_RS14785 0.21 +0.3
2,994,137 + A4249_RS14785 0.21 +0.2
2,994,137 + A4249_RS14785 0.21 +0.1
2,994,137 + A4249_RS14785 0.21 +0.3
2,994,137 + A4249_RS14785 0.21 +0.1
2,994,137 + A4249_RS14785 0.21 +0.2
2,994,137 + A4249_RS14785 0.21 +0.5
2,994,137 + A4249_RS14785 0.21 -0.1
2,994,137 + A4249_RS14785 0.21 +0.2
2,994,137 + A4249_RS14785 0.21 +0.1
2,994,137 + A4249_RS14785 0.21 +0.2
2,994,137 + A4249_RS14785 0.21 +0.2
2,994,137 + A4249_RS14785 0.21 +1.3
2,994,137 + A4249_RS14785 0.21 -0.0
2,994,138 - A4249_RS14785 0.21 -0.1
2,994,138 - A4249_RS14785 0.21 +0.0
2,994,138 - A4249_RS14785 0.21 +0.2
2,994,138 - A4249_RS14785 0.21 +0.4
2,994,138 - A4249_RS14785 0.21 +0.1
2,994,138 - A4249_RS14785 0.21 +0.2

Or see this region's nucleotide sequence