Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS13405 and A4249_RS13410 are separated by 266 nucleotides A4249_RS13410 and A4249_RS13415 are separated by 37 nucleotides A4249_RS13415 and A4249_RS13420 are separated by 206 nucleotides
A4249_RS13405: A4249_RS13405 - alanine--tRNA ligase, at 2,707,903 to 2,710,560
_RS13405
A4249_RS13410: A4249_RS13410 - pirin family protein, at 2,710,827 to 2,711,687
_RS13410
A4249_RS13415: A4249_RS13415 - hypothetical protein, at 2,711,725 to 2,712,318
_RS13415
A4249_RS13420: A4249_RS13420 - succinate dehydrogenase, cytochrome b556 subunit, at 2,712,525 to 2,712,989
_RS13420
Position (kb)
2710
2711
2712 Strain fitness (log2 ratio)
-2
-1
0
1 at 2710.604 kb on + strand at 2710.604 kb on + strand at 2710.604 kb on + strand at 2710.604 kb on + strand at 2710.604 kb on + strand at 2710.604 kb on + strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.605 kb on - strand at 2710.606 kb on + strand at 2710.606 kb on + strand at 2710.606 kb on + strand at 2710.606 kb on + strand at 2710.606 kb on + strand at 2710.607 kb on - strand at 2710.607 kb on - strand at 2710.607 kb on - strand at 2710.607 kb on - strand at 2710.607 kb on - strand at 2710.733 kb on + strand at 2710.733 kb on + strand at 2710.733 kb on + strand at 2710.734 kb on - strand at 2710.734 kb on - strand at 2710.734 kb on - strand at 2710.823 kb on + strand at 2710.823 kb on + strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.824 kb on - strand at 2710.864 kb on + strand at 2710.864 kb on + strand at 2710.864 kb on + strand at 2710.864 kb on + strand at 2710.865 kb on - strand at 2710.865 kb on - strand at 2710.865 kb on - strand at 2711.074 kb on + strand, within A4249_RS13410 at 2711.074 kb on + strand, within A4249_RS13410 at 2711.074 kb on + strand, within A4249_RS13410 at 2711.075 kb on - strand, within A4249_RS13410 at 2711.269 kb on + strand, within A4249_RS13410 at 2711.269 kb on + strand, within A4249_RS13410 at 2711.269 kb on + strand, within A4249_RS13410 at 2711.269 kb on + strand, within A4249_RS13410 at 2711.269 kb on + strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.270 kb on - strand, within A4249_RS13410 at 2711.542 kb on + strand, within A4249_RS13410 at 2711.542 kb on + strand, within A4249_RS13410 at 2711.542 kb on + strand, within A4249_RS13410 at 2711.542 kb on + strand, within A4249_RS13410 at 2711.542 kb on + strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.543 kb on - strand, within A4249_RS13410 at 2711.692 kb on + strand at 2711.693 kb on - strand at 2711.696 kb on + strand at 2711.697 kb on - strand at 2711.698 kb on + strand at 2711.698 kb on + strand at 2711.698 kb on + strand at 2711.699 kb on - strand at 2711.746 kb on - strand at 2712.065 kb on + strand, within A4249_RS13415 at 2712.065 kb on + strand, within A4249_RS13415 at 2712.065 kb on + strand, within A4249_RS13415 at 2712.065 kb on + strand, within A4249_RS13415 at 2712.065 kb on + strand, within A4249_RS13415 at 2712.065 kb on + strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.066 kb on - strand, within A4249_RS13415 at 2712.098 kb on + strand, within A4249_RS13415 at 2712.099 kb on - strand, within A4249_RS13415 at 2712.099 kb on - strand, within A4249_RS13415 at 2712.110 kb on + strand, within A4249_RS13415 at 2712.209 kb on + strand, within A4249_RS13415 at 2712.234 kb on - strand, within A4249_RS13415 at 2712.407 kb on + strand at 2712.407 kb on + strand at 2712.407 kb on + strand at 2712.408 kb on - strand at 2712.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 2,710,604 + -0.5 2,710,604 + -1.4 2,710,604 + -0.4 2,710,604 + -0.8 2,710,604 + -0.8 2,710,604 + +1.4 2,710,605 - +1.4 2,710,605 - -0.2 2,710,605 - -0.6 2,710,605 - -0.0 2,710,605 - +1.4 2,710,605 - -0.0 2,710,605 - +0.7 2,710,605 - +0.5 2,710,606 + -1.2 2,710,606 + -0.4 2,710,606 + +1.0 2,710,606 + +0.4 2,710,606 + +0.8 2,710,607 - +0.7 2,710,607 - -0.4 2,710,607 - -0.6 2,710,607 - +0.6 2,710,607 - +0.3 2,710,733 + -0.4 2,710,733 + -0.6 2,710,733 + -0.0 2,710,734 - -0.2 2,710,734 - +0.6 2,710,734 - -0.7 2,710,823 + +0.2 2,710,823 + +0.5 2,710,824 - +0.5 2,710,824 - +0.2 2,710,824 - -1.1 2,710,824 - -0.3 2,710,824 - -0.3 2,710,824 - +0.2 2,710,824 - +0.3 2,710,824 - -0.4 2,710,824 - -0.0 2,710,824 - +0.1 2,710,864 + -0.0 2,710,864 + -0.1 2,710,864 + -0.7 2,710,864 + +1.3 2,710,865 - +0.4 2,710,865 - -0.5 2,710,865 - +0.0 2,711,074 + A4249_RS13410 0.29 +0.8 2,711,074 + A4249_RS13410 0.29 -0.4 2,711,074 + A4249_RS13410 0.29 +0.5 2,711,075 - A4249_RS13410 0.29 +0.1 2,711,269 + A4249_RS13410 0.51 +0.3 2,711,269 + A4249_RS13410 0.51 -0.4 2,711,269 + A4249_RS13410 0.51 -0.9 2,711,269 + A4249_RS13410 0.51 -0.6 2,711,269 + A4249_RS13410 0.51 -0.7 2,711,270 - A4249_RS13410 0.51 -0.2 2,711,270 - A4249_RS13410 0.51 +0.4 2,711,270 - A4249_RS13410 0.51 -0.8 2,711,270 - A4249_RS13410 0.51 -1.0 2,711,270 - A4249_RS13410 0.51 -0.1 2,711,270 - A4249_RS13410 0.51 +0.6 2,711,542 + A4249_RS13410 0.83 -0.4 2,711,542 + A4249_RS13410 0.83 -0.2 2,711,542 + A4249_RS13410 0.83 +0.2 2,711,542 + A4249_RS13410 0.83 -0.3 2,711,542 + A4249_RS13410 0.83 -0.6 2,711,543 - A4249_RS13410 0.83 +1.7 2,711,543 - A4249_RS13410 0.83 -0.1 2,711,543 - A4249_RS13410 0.83 -0.6 2,711,543 - A4249_RS13410 0.83 +0.8 2,711,543 - A4249_RS13410 0.83 -0.4 2,711,543 - A4249_RS13410 0.83 +0.2 2,711,543 - A4249_RS13410 0.83 +0.1 2,711,692 + +0.3 2,711,693 - -0.2 2,711,696 + +0.7 2,711,697 - +0.2 2,711,698 + +0.2 2,711,698 + -0.6 2,711,698 + +0.2 2,711,699 - -2.0 2,711,746 - -0.2 2,712,065 + A4249_RS13415 0.57 +0.4 2,712,065 + A4249_RS13415 0.57 -0.4 2,712,065 + A4249_RS13415 0.57 -0.1 2,712,065 + A4249_RS13415 0.57 -1.2 2,712,065 + A4249_RS13415 0.57 -0.1 2,712,065 + A4249_RS13415 0.57 -0.4 2,712,066 - A4249_RS13415 0.57 -0.2 2,712,066 - A4249_RS13415 0.57 +0.1 2,712,066 - A4249_RS13415 0.57 +0.3 2,712,066 - A4249_RS13415 0.57 +1.2 2,712,066 - A4249_RS13415 0.57 -1.3 2,712,066 - A4249_RS13415 0.57 +0.7 2,712,066 - A4249_RS13415 0.57 -0.6 2,712,066 - A4249_RS13415 0.57 -0.1 2,712,098 + A4249_RS13415 0.63 -0.3 2,712,099 - A4249_RS13415 0.63 +1.0 2,712,099 - A4249_RS13415 0.63 +0.1 2,712,110 + A4249_RS13415 0.65 +0.7 2,712,209 + A4249_RS13415 0.81 -0.1 2,712,234 - A4249_RS13415 0.86 -0.1 2,712,407 + -1.0 2,712,407 + +0.1 2,712,407 + -0.4 2,712,408 - +0.9 2,712,408 - -0.2
Or see this region's nucleotide sequence