Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11910 and A4249_RS11915 are separated by 93 nucleotides A4249_RS11915 and A4249_RS11920 are separated by 116 nucleotides A4249_RS11920 and A4249_RS11925 overlap by 1 nucleotides
A4249_RS11910: A4249_RS11910 - pyridoxamine 5'-phosphate oxidase family protein, at 2,393,206 to 2,393,703
_RS11910
A4249_RS11915: A4249_RS11915 - hypothetical protein, at 2,393,797 to 2,394,474
_RS11915
A4249_RS11920: A4249_RS11920 - ornithine carbamoyltransferase, at 2,394,591 to 2,395,505
_RS11920
A4249_RS11925: A4249_RS11925 - aspartate aminotransferase family protein, at 2,395,505 to 2,396,680
_RS11925
Position (kb)
2394
2395
2396 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2393.632 kb on + strand, within A4249_RS11910 at 2393.633 kb on - strand, within A4249_RS11910 at 2393.701 kb on + strand at 2393.701 kb on + strand at 2393.719 kb on + strand at 2393.719 kb on + strand at 2393.719 kb on + strand at 2393.720 kb on - strand at 2393.720 kb on - strand at 2393.720 kb on - strand at 2393.720 kb on - strand at 2393.720 kb on - strand at 2393.897 kb on + strand, within A4249_RS11915 at 2393.898 kb on - strand, within A4249_RS11915 at 2393.898 kb on - strand, within A4249_RS11915 at 2393.898 kb on - strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.223 kb on + strand, within A4249_RS11915 at 2394.224 kb on - strand, within A4249_RS11915 at 2394.234 kb on + strand, within A4249_RS11915 at 2394.234 kb on + strand, within A4249_RS11915 at 2394.235 kb on - strand, within A4249_RS11915 at 2394.235 kb on - strand, within A4249_RS11915 at 2394.303 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.344 kb on + strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.345 kb on - strand, within A4249_RS11915 at 2394.387 kb on + strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.388 kb on - strand, within A4249_RS11915 at 2394.508 kb on - strand at 2394.508 kb on - strand at 2394.521 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.587 kb on + strand at 2394.588 kb on - strand at 2394.588 kb on - strand at 2394.588 kb on - strand at 2394.588 kb on - strand at 2394.588 kb on - strand at 2394.778 kb on + strand, within A4249_RS11920 at 2394.778 kb on + strand, within A4249_RS11920 at 2394.778 kb on + strand, within A4249_RS11920 at 2394.778 kb on + strand, within A4249_RS11920 at 2394.779 kb on - strand, within A4249_RS11920 at 2394.779 kb on - strand, within A4249_RS11920 at 2394.779 kb on - strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.808 kb on + strand, within A4249_RS11920 at 2394.809 kb on - strand, within A4249_RS11920 at 2394.809 kb on - strand, within A4249_RS11920 at 2394.809 kb on - strand, within A4249_RS11920 at 2394.809 kb on - strand, within A4249_RS11920 at 2394.809 kb on - strand, within A4249_RS11920 at 2394.938 kb on - strand, within A4249_RS11920 at 2394.938 kb on - strand, within A4249_RS11920 at 2395.334 kb on + strand, within A4249_RS11920 at 2395.334 kb on + strand, within A4249_RS11920 at 2395.335 kb on - strand, within A4249_RS11920 at 2395.335 kb on - strand, within A4249_RS11920
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 2,393,632 + A4249_RS11910 0.86 -0.2 2,393,633 - A4249_RS11910 0.86 +0.5 2,393,701 + -0.4 2,393,701 + +0.6 2,393,719 + -0.4 2,393,719 + +1.3 2,393,719 + +0.8 2,393,720 - +0.1 2,393,720 - +0.0 2,393,720 - +1.5 2,393,720 - -0.4 2,393,720 - +2.4 2,393,897 + A4249_RS11915 0.15 -1.4 2,393,898 - A4249_RS11915 0.15 +0.2 2,393,898 - A4249_RS11915 0.15 -0.1 2,393,898 - A4249_RS11915 0.15 -0.3 2,394,223 + A4249_RS11915 0.63 -0.0 2,394,223 + A4249_RS11915 0.63 -0.6 2,394,223 + A4249_RS11915 0.63 -0.6 2,394,223 + A4249_RS11915 0.63 +0.1 2,394,223 + A4249_RS11915 0.63 -0.3 2,394,223 + A4249_RS11915 0.63 -0.4 2,394,224 - A4249_RS11915 0.63 -0.1 2,394,234 + A4249_RS11915 0.64 +0.2 2,394,234 + A4249_RS11915 0.64 -0.1 2,394,235 - A4249_RS11915 0.65 +0.1 2,394,235 - A4249_RS11915 0.65 -0.4 2,394,303 + A4249_RS11915 0.75 -2.2 2,394,344 + A4249_RS11915 0.81 -0.2 2,394,344 + A4249_RS11915 0.81 +1.3 2,394,344 + A4249_RS11915 0.81 -1.8 2,394,344 + A4249_RS11915 0.81 -0.4 2,394,344 + A4249_RS11915 0.81 -0.3 2,394,344 + A4249_RS11915 0.81 +0.6 2,394,344 + A4249_RS11915 0.81 -0.4 2,394,344 + A4249_RS11915 0.81 +0.7 2,394,344 + A4249_RS11915 0.81 +0.6 2,394,344 + A4249_RS11915 0.81 +0.8 2,394,345 - A4249_RS11915 0.81 +2.0 2,394,345 - A4249_RS11915 0.81 -0.8 2,394,345 - A4249_RS11915 0.81 +0.8 2,394,345 - A4249_RS11915 0.81 -0.5 2,394,345 - A4249_RS11915 0.81 -0.1 2,394,345 - A4249_RS11915 0.81 -0.3 2,394,345 - A4249_RS11915 0.81 -0.1 2,394,345 - A4249_RS11915 0.81 +0.3 2,394,345 - A4249_RS11915 0.81 -0.2 2,394,387 + A4249_RS11915 0.87 -2.2 2,394,388 - A4249_RS11915 0.87 -0.2 2,394,388 - A4249_RS11915 0.87 +0.7 2,394,388 - A4249_RS11915 0.87 +0.0 2,394,388 - A4249_RS11915 0.87 +0.1 2,394,388 - A4249_RS11915 0.87 +0.1 2,394,388 - A4249_RS11915 0.87 -0.4 2,394,388 - A4249_RS11915 0.87 -0.3 2,394,508 - -2.3 2,394,508 - -0.8 2,394,521 + -0.2 2,394,587 + +0.2 2,394,587 + +0.6 2,394,587 + +0.2 2,394,587 + +0.5 2,394,587 + -0.4 2,394,587 + -0.1 2,394,587 + -0.5 2,394,587 + -0.0 2,394,587 + -0.3 2,394,587 + +0.2 2,394,588 - +1.1 2,394,588 - -0.3 2,394,588 - -0.7 2,394,588 - +0.8 2,394,588 - -0.1 2,394,778 + A4249_RS11920 0.20 -1.6 2,394,778 + A4249_RS11920 0.20 -0.8 2,394,778 + A4249_RS11920 0.20 -0.7 2,394,778 + A4249_RS11920 0.20 -0.9 2,394,779 - A4249_RS11920 0.21 -1.4 2,394,779 - A4249_RS11920 0.21 +0.6 2,394,779 - A4249_RS11920 0.21 -0.6 2,394,808 + A4249_RS11920 0.24 +0.4 2,394,808 + A4249_RS11920 0.24 -1.2 2,394,808 + A4249_RS11920 0.24 -0.0 2,394,808 + A4249_RS11920 0.24 -0.0 2,394,808 + A4249_RS11920 0.24 -0.4 2,394,808 + A4249_RS11920 0.24 -0.2 2,394,808 + A4249_RS11920 0.24 -0.6 2,394,808 + A4249_RS11920 0.24 -0.3 2,394,808 + A4249_RS11920 0.24 -0.5 2,394,809 - A4249_RS11920 0.24 -1.1 2,394,809 - A4249_RS11920 0.24 -0.6 2,394,809 - A4249_RS11920 0.24 -0.5 2,394,809 - A4249_RS11920 0.24 +0.1 2,394,809 - A4249_RS11920 0.24 -0.5 2,394,938 - A4249_RS11920 0.38 -1.3 2,394,938 - A4249_RS11920 0.38 -0.5 2,395,334 + A4249_RS11920 0.81 -1.4 2,395,334 + A4249_RS11920 0.81 -0.8 2,395,335 - A4249_RS11920 0.81 -0.6 2,395,335 - A4249_RS11920 0.81 -0.3
Or see this region's nucleotide sequence