Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11920

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11910 and A4249_RS11915 are separated by 93 nucleotidesA4249_RS11915 and A4249_RS11920 are separated by 116 nucleotidesA4249_RS11920 and A4249_RS11925 overlap by 1 nucleotides A4249_RS11910: A4249_RS11910 - pyridoxamine 5'-phosphate oxidase family protein, at 2,393,206 to 2,393,703 _RS11910 A4249_RS11915: A4249_RS11915 - hypothetical protein, at 2,393,797 to 2,394,474 _RS11915 A4249_RS11920: A4249_RS11920 - ornithine carbamoyltransferase, at 2,394,591 to 2,395,505 _RS11920 A4249_RS11925: A4249_RS11925 - aspartate aminotransferase family protein, at 2,395,505 to 2,396,680 _RS11925 Position (kb) 2394 2395 2396Strain fitness (log2 ratio) -2 -1 0 1 2at 2393.632 kb on + strand, within A4249_RS11910at 2393.633 kb on - strand, within A4249_RS11910at 2393.701 kb on + strandat 2393.701 kb on + strandat 2393.719 kb on + strandat 2393.719 kb on + strandat 2393.719 kb on + strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.897 kb on + strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.223 kb on + strand, within A4249_RS11915at 2394.224 kb on - strand, within A4249_RS11915at 2394.234 kb on + strand, within A4249_RS11915at 2394.234 kb on + strand, within A4249_RS11915at 2394.235 kb on - strand, within A4249_RS11915at 2394.235 kb on - strand, within A4249_RS11915at 2394.303 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.344 kb on + strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.345 kb on - strand, within A4249_RS11915at 2394.387 kb on + strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.388 kb on - strand, within A4249_RS11915at 2394.508 kb on - strandat 2394.508 kb on - strandat 2394.521 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.587 kb on + strandat 2394.588 kb on - strandat 2394.588 kb on - strandat 2394.588 kb on - strandat 2394.588 kb on - strandat 2394.588 kb on - strandat 2394.778 kb on + strand, within A4249_RS11920at 2394.778 kb on + strand, within A4249_RS11920at 2394.778 kb on + strand, within A4249_RS11920at 2394.778 kb on + strand, within A4249_RS11920at 2394.779 kb on - strand, within A4249_RS11920at 2394.779 kb on - strand, within A4249_RS11920at 2394.779 kb on - strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.808 kb on + strand, within A4249_RS11920at 2394.809 kb on - strand, within A4249_RS11920at 2394.809 kb on - strand, within A4249_RS11920at 2394.809 kb on - strand, within A4249_RS11920at 2394.809 kb on - strand, within A4249_RS11920at 2394.809 kb on - strand, within A4249_RS11920at 2394.938 kb on - strand, within A4249_RS11920at 2394.938 kb on - strand, within A4249_RS11920at 2395.334 kb on + strand, within A4249_RS11920at 2395.334 kb on + strand, within A4249_RS11920at 2395.335 kb on - strand, within A4249_RS11920at 2395.335 kb on - strand, within A4249_RS11920

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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2,393,632 + A4249_RS11910 0.86 -0.2
2,393,633 - A4249_RS11910 0.86 +0.5
2,393,701 + -0.4
2,393,701 + +0.6
2,393,719 + -0.4
2,393,719 + +1.3
2,393,719 + +0.8
2,393,720 - +0.1
2,393,720 - +0.0
2,393,720 - +1.5
2,393,720 - -0.4
2,393,720 - +2.4
2,393,897 + A4249_RS11915 0.15 -1.4
2,393,898 - A4249_RS11915 0.15 +0.2
2,393,898 - A4249_RS11915 0.15 -0.1
2,393,898 - A4249_RS11915 0.15 -0.3
2,394,223 + A4249_RS11915 0.63 -0.0
2,394,223 + A4249_RS11915 0.63 -0.6
2,394,223 + A4249_RS11915 0.63 -0.6
2,394,223 + A4249_RS11915 0.63 +0.1
2,394,223 + A4249_RS11915 0.63 -0.3
2,394,223 + A4249_RS11915 0.63 -0.4
2,394,224 - A4249_RS11915 0.63 -0.1
2,394,234 + A4249_RS11915 0.64 +0.2
2,394,234 + A4249_RS11915 0.64 -0.1
2,394,235 - A4249_RS11915 0.65 +0.1
2,394,235 - A4249_RS11915 0.65 -0.4
2,394,303 + A4249_RS11915 0.75 -2.2
2,394,344 + A4249_RS11915 0.81 -0.2
2,394,344 + A4249_RS11915 0.81 +1.3
2,394,344 + A4249_RS11915 0.81 -1.8
2,394,344 + A4249_RS11915 0.81 -0.4
2,394,344 + A4249_RS11915 0.81 -0.3
2,394,344 + A4249_RS11915 0.81 +0.6
2,394,344 + A4249_RS11915 0.81 -0.4
2,394,344 + A4249_RS11915 0.81 +0.7
2,394,344 + A4249_RS11915 0.81 +0.6
2,394,344 + A4249_RS11915 0.81 +0.8
2,394,345 - A4249_RS11915 0.81 +2.0
2,394,345 - A4249_RS11915 0.81 -0.8
2,394,345 - A4249_RS11915 0.81 +0.8
2,394,345 - A4249_RS11915 0.81 -0.5
2,394,345 - A4249_RS11915 0.81 -0.1
2,394,345 - A4249_RS11915 0.81 -0.3
2,394,345 - A4249_RS11915 0.81 -0.1
2,394,345 - A4249_RS11915 0.81 +0.3
2,394,345 - A4249_RS11915 0.81 -0.2
2,394,387 + A4249_RS11915 0.87 -2.2
2,394,388 - A4249_RS11915 0.87 -0.2
2,394,388 - A4249_RS11915 0.87 +0.7
2,394,388 - A4249_RS11915 0.87 +0.0
2,394,388 - A4249_RS11915 0.87 +0.1
2,394,388 - A4249_RS11915 0.87 +0.1
2,394,388 - A4249_RS11915 0.87 -0.4
2,394,388 - A4249_RS11915 0.87 -0.3
2,394,508 - -2.3
2,394,508 - -0.8
2,394,521 + -0.2
2,394,587 + +0.2
2,394,587 + +0.6
2,394,587 + +0.2
2,394,587 + +0.5
2,394,587 + -0.4
2,394,587 + -0.1
2,394,587 + -0.5
2,394,587 + -0.0
2,394,587 + -0.3
2,394,587 + +0.2
2,394,588 - +1.1
2,394,588 - -0.3
2,394,588 - -0.7
2,394,588 - +0.8
2,394,588 - -0.1
2,394,778 + A4249_RS11920 0.20 -1.6
2,394,778 + A4249_RS11920 0.20 -0.8
2,394,778 + A4249_RS11920 0.20 -0.7
2,394,778 + A4249_RS11920 0.20 -0.9
2,394,779 - A4249_RS11920 0.21 -1.4
2,394,779 - A4249_RS11920 0.21 +0.6
2,394,779 - A4249_RS11920 0.21 -0.6
2,394,808 + A4249_RS11920 0.24 +0.4
2,394,808 + A4249_RS11920 0.24 -1.2
2,394,808 + A4249_RS11920 0.24 -0.0
2,394,808 + A4249_RS11920 0.24 -0.0
2,394,808 + A4249_RS11920 0.24 -0.4
2,394,808 + A4249_RS11920 0.24 -0.2
2,394,808 + A4249_RS11920 0.24 -0.6
2,394,808 + A4249_RS11920 0.24 -0.3
2,394,808 + A4249_RS11920 0.24 -0.5
2,394,809 - A4249_RS11920 0.24 -1.1
2,394,809 - A4249_RS11920 0.24 -0.6
2,394,809 - A4249_RS11920 0.24 -0.5
2,394,809 - A4249_RS11920 0.24 +0.1
2,394,809 - A4249_RS11920 0.24 -0.5
2,394,938 - A4249_RS11920 0.38 -1.3
2,394,938 - A4249_RS11920 0.38 -0.5
2,395,334 + A4249_RS11920 0.81 -1.4
2,395,334 + A4249_RS11920 0.81 -0.8
2,395,335 - A4249_RS11920 0.81 -0.6
2,395,335 - A4249_RS11920 0.81 -0.3

Or see this region's nucleotide sequence