Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11275 and A4249_RS11280 are separated by 29 nucleotides A4249_RS11280 and A4249_RS11285 overlap by 4 nucleotides A4249_RS11285 and A4249_RS11290 overlap by 4 nucleotides
A4249_RS11275: A4249_RS11275 - phosphotransferase, at 2,271,316 to 2,272,407
_RS11275
A4249_RS11280: A4249_RS11280 - nucleotidyltransferase family protein, at 2,272,437 to 2,273,147
_RS11280
A4249_RS11285: A4249_RS11285 - double-strand break repair protein AddB, at 2,273,144 to 2,276,197
_RS11285
A4249_RS11290: A4249_RS11290 - double-strand break repair helicase AddA, at 2,276,194 to 2,279,622
_RS11290
Position (kb)
2273
2274
2275
2276
2277 Strain fitness (log2 ratio)
-1
0
1 at 2272.162 kb on + strand, within A4249_RS11275 at 2272.162 kb on + strand, within A4249_RS11275 at 2272.162 kb on + strand, within A4249_RS11275 at 2272.163 kb on - strand, within A4249_RS11275 at 2272.210 kb on + strand, within A4249_RS11275 at 2272.210 kb on + strand, within A4249_RS11275 at 2272.211 kb on - strand, within A4249_RS11275 at 2272.252 kb on - strand, within A4249_RS11275 at 2272.292 kb on - strand, within A4249_RS11275 at 2272.953 kb on + strand, within A4249_RS11280 at 2272.956 kb on - strand, within A4249_RS11280 at 2273.186 kb on + strand at 2274.952 kb on - strand, within A4249_RS11285 at 2275.370 kb on + strand, within A4249_RS11285 at 2275.370 kb on + strand, within A4249_RS11285 at 2275.371 kb on - strand, within A4249_RS11285 at 2275.415 kb on + strand, within A4249_RS11285 at 2275.416 kb on - strand, within A4249_RS11285 at 2275.563 kb on + strand, within A4249_RS11285 at 2275.563 kb on + strand, within A4249_RS11285 at 2275.563 kb on + strand, within A4249_RS11285 at 2275.563 kb on + strand, within A4249_RS11285 at 2275.564 kb on - strand, within A4249_RS11285 at 2275.564 kb on - strand, within A4249_RS11285 at 2275.564 kb on - strand, within A4249_RS11285 at 2275.564 kb on - strand, within A4249_RS11285 at 2275.949 kb on + strand at 2275.949 kb on + strand at 2275.950 kb on - strand at 2275.950 kb on - strand at 2276.087 kb on + strand at 2276.351 kb on - strand at 2276.812 kb on + strand, within A4249_RS11290 at 2276.813 kb on - strand, within A4249_RS11290 at 2276.815 kb on - strand, within A4249_RS11290 at 2276.815 kb on - strand, within A4249_RS11290
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 2,272,162 + A4249_RS11275 0.77 -0.0 2,272,162 + A4249_RS11275 0.77 -0.4 2,272,162 + A4249_RS11275 0.77 -1.0 2,272,163 - A4249_RS11275 0.78 -0.8 2,272,210 + A4249_RS11275 0.82 +1.1 2,272,210 + A4249_RS11275 0.82 +0.0 2,272,211 - A4249_RS11275 0.82 -0.3 2,272,252 - A4249_RS11275 0.86 +0.5 2,272,292 - A4249_RS11275 0.89 +0.0 2,272,953 + A4249_RS11280 0.73 -0.4 2,272,956 - A4249_RS11280 0.73 +1.1 2,273,186 + -0.6 2,274,952 - A4249_RS11285 0.59 -0.1 2,275,370 + A4249_RS11285 0.73 +0.9 2,275,370 + A4249_RS11285 0.73 +1.3 2,275,371 - A4249_RS11285 0.73 +1.4 2,275,415 + A4249_RS11285 0.74 -1.5 2,275,416 - A4249_RS11285 0.74 +0.7 2,275,563 + A4249_RS11285 0.79 -0.3 2,275,563 + A4249_RS11285 0.79 -0.5 2,275,563 + A4249_RS11285 0.79 -0.1 2,275,563 + A4249_RS11285 0.79 -0.5 2,275,564 - A4249_RS11285 0.79 -0.5 2,275,564 - A4249_RS11285 0.79 +0.7 2,275,564 - A4249_RS11285 0.79 +0.9 2,275,564 - A4249_RS11285 0.79 -0.3 2,275,949 + -0.3 2,275,949 + -0.5 2,275,950 - +1.7 2,275,950 - -0.3 2,276,087 + -0.2 2,276,351 - +0.4 2,276,812 + A4249_RS11290 0.18 -0.9 2,276,813 - A4249_RS11290 0.18 -0.1 2,276,815 - A4249_RS11290 0.18 +0.7 2,276,815 - A4249_RS11290 0.18 +1.4
Or see this region's nucleotide sequence