Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11285

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11275 and A4249_RS11280 are separated by 29 nucleotidesA4249_RS11280 and A4249_RS11285 overlap by 4 nucleotidesA4249_RS11285 and A4249_RS11290 overlap by 4 nucleotides A4249_RS11275: A4249_RS11275 - phosphotransferase, at 2,271,316 to 2,272,407 _RS11275 A4249_RS11280: A4249_RS11280 - nucleotidyltransferase family protein, at 2,272,437 to 2,273,147 _RS11280 A4249_RS11285: A4249_RS11285 - double-strand break repair protein AddB, at 2,273,144 to 2,276,197 _RS11285 A4249_RS11290: A4249_RS11290 - double-strand break repair helicase AddA, at 2,276,194 to 2,279,622 _RS11290 Position (kb) 2273 2274 2275 2276 2277Strain fitness (log2 ratio) -1 0 1at 2272.162 kb on + strand, within A4249_RS11275at 2272.162 kb on + strand, within A4249_RS11275at 2272.162 kb on + strand, within A4249_RS11275at 2272.163 kb on - strand, within A4249_RS11275at 2272.210 kb on + strand, within A4249_RS11275at 2272.210 kb on + strand, within A4249_RS11275at 2272.211 kb on - strand, within A4249_RS11275at 2272.252 kb on - strand, within A4249_RS11275at 2272.292 kb on - strand, within A4249_RS11275at 2272.953 kb on + strand, within A4249_RS11280at 2272.956 kb on - strand, within A4249_RS11280at 2273.186 kb on + strandat 2274.952 kb on - strand, within A4249_RS11285at 2275.370 kb on + strand, within A4249_RS11285at 2275.370 kb on + strand, within A4249_RS11285at 2275.371 kb on - strand, within A4249_RS11285at 2275.415 kb on + strand, within A4249_RS11285at 2275.416 kb on - strand, within A4249_RS11285at 2275.563 kb on + strand, within A4249_RS11285at 2275.563 kb on + strand, within A4249_RS11285at 2275.563 kb on + strand, within A4249_RS11285at 2275.563 kb on + strand, within A4249_RS11285at 2275.564 kb on - strand, within A4249_RS11285at 2275.564 kb on - strand, within A4249_RS11285at 2275.564 kb on - strand, within A4249_RS11285at 2275.564 kb on - strand, within A4249_RS11285at 2275.949 kb on + strandat 2275.949 kb on + strandat 2275.950 kb on - strandat 2275.950 kb on - strandat 2276.087 kb on + strandat 2276.351 kb on - strandat 2276.812 kb on + strand, within A4249_RS11290at 2276.813 kb on - strand, within A4249_RS11290at 2276.815 kb on - strand, within A4249_RS11290at 2276.815 kb on - strand, within A4249_RS11290

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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2,272,162 + A4249_RS11275 0.77 -0.0
2,272,162 + A4249_RS11275 0.77 -0.4
2,272,162 + A4249_RS11275 0.77 -1.0
2,272,163 - A4249_RS11275 0.78 -0.8
2,272,210 + A4249_RS11275 0.82 +1.1
2,272,210 + A4249_RS11275 0.82 +0.0
2,272,211 - A4249_RS11275 0.82 -0.3
2,272,252 - A4249_RS11275 0.86 +0.5
2,272,292 - A4249_RS11275 0.89 +0.0
2,272,953 + A4249_RS11280 0.73 -0.4
2,272,956 - A4249_RS11280 0.73 +1.1
2,273,186 + -0.6
2,274,952 - A4249_RS11285 0.59 -0.1
2,275,370 + A4249_RS11285 0.73 +0.9
2,275,370 + A4249_RS11285 0.73 +1.3
2,275,371 - A4249_RS11285 0.73 +1.4
2,275,415 + A4249_RS11285 0.74 -1.5
2,275,416 - A4249_RS11285 0.74 +0.7
2,275,563 + A4249_RS11285 0.79 -0.3
2,275,563 + A4249_RS11285 0.79 -0.5
2,275,563 + A4249_RS11285 0.79 -0.1
2,275,563 + A4249_RS11285 0.79 -0.5
2,275,564 - A4249_RS11285 0.79 -0.5
2,275,564 - A4249_RS11285 0.79 +0.7
2,275,564 - A4249_RS11285 0.79 +0.9
2,275,564 - A4249_RS11285 0.79 -0.3
2,275,949 + -0.3
2,275,949 + -0.5
2,275,950 - +1.7
2,275,950 - -0.3
2,276,087 + -0.2
2,276,351 - +0.4
2,276,812 + A4249_RS11290 0.18 -0.9
2,276,813 - A4249_RS11290 0.18 -0.1
2,276,815 - A4249_RS11290 0.18 +0.7
2,276,815 - A4249_RS11290 0.18 +1.4

Or see this region's nucleotide sequence