Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10330 and A4249_RS10335 are separated by 380 nucleotides A4249_RS10335 and A4249_RS10340 overlap by 4 nucleotides A4249_RS10340 and A4249_RS10345 are separated by 96 nucleotides
A4249_RS10330: A4249_RS10330 - response regulator transcription factor, at 2,073,955 to 2,074,656
_RS10330
A4249_RS10335: A4249_RS10335 - chromosomal replication initiator DnaA, at 2,075,037 to 2,075,393
_RS10335
A4249_RS10340: A4249_RS10340 - DUF6456 domain-containing protein, at 2,075,390 to 2,076,100
_RS10340
A4249_RS10345: A4249_RS10345 - hypothetical protein, at 2,076,197 to 2,076,604
_RS10345
Position (kb)
2075
2076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2074.657 kb on - strand at 2074.729 kb on - strand at 2074.729 kb on - strand at 2074.780 kb on - strand at 2074.831 kb on + strand at 2074.996 kb on + strand at 2074.996 kb on + strand at 2074.996 kb on + strand at 2074.996 kb on + strand at 2074.996 kb on + strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2074.997 kb on - strand at 2075.049 kb on + strand at 2075.049 kb on + strand at 2075.049 kb on + strand at 2075.049 kb on + strand at 2075.049 kb on + strand at 2075.050 kb on - strand at 2075.050 kb on - strand at 2075.050 kb on - strand at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.196 kb on + strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.197 kb on - strand, within A4249_RS10335 at 2075.214 kb on + strand, within A4249_RS10335 at 2075.214 kb on + strand, within A4249_RS10335 at 2075.215 kb on - strand, within A4249_RS10335 at 2075.361 kb on + strand at 2075.361 kb on + strand at 2075.361 kb on + strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.362 kb on - strand at 2075.465 kb on + strand, within A4249_RS10340 at 2075.465 kb on + strand, within A4249_RS10340 at 2075.465 kb on + strand, within A4249_RS10340 at 2075.465 kb on + strand, within A4249_RS10340 at 2075.466 kb on - strand, within A4249_RS10340 at 2075.466 kb on - strand, within A4249_RS10340 at 2076.027 kb on + strand, within A4249_RS10340 at 2076.086 kb on + strand at 2076.114 kb on + strand at 2076.185 kb on + strand at 2076.185 kb on + strand at 2076.185 kb on + strand at 2076.186 kb on - strand at 2076.186 kb on - strand at 2076.186 kb on - strand at 2076.186 kb on - strand at 2076.186 kb on - strand at 2076.190 kb on + strand at 2076.190 kb on + strand at 2076.190 kb on + strand at 2076.191 kb on - strand at 2076.191 kb on - strand at 2076.191 kb on - strand at 2076.191 kb on - strand at 2076.191 kb on - strand at 2076.196 kb on + strand at 2076.196 kb on + strand at 2076.196 kb on + strand at 2076.197 kb on - strand at 2076.197 kb on - strand at 2076.197 kb on - strand at 2076.197 kb on - strand at 2076.197 kb on - strand at 2076.278 kb on + strand, within A4249_RS10345 at 2076.317 kb on + strand, within A4249_RS10345 at 2076.318 kb on - strand, within A4249_RS10345 at 2076.370 kb on + strand, within A4249_RS10345 at 2076.370 kb on + strand, within A4249_RS10345 at 2076.371 kb on - strand, within A4249_RS10345
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 2,074,657 - +0.3 2,074,729 - +0.6 2,074,729 - +0.4 2,074,780 - +1.1 2,074,831 + +1.1 2,074,996 + -0.6 2,074,996 + -0.3 2,074,996 + -0.1 2,074,996 + -0.0 2,074,996 + +0.9 2,074,997 - -0.6 2,074,997 - -1.8 2,074,997 - +0.7 2,074,997 - -0.9 2,074,997 - -0.5 2,074,997 - -1.7 2,074,997 - +0.1 2,074,997 - -0.0 2,074,997 - +0.2 2,075,049 + +1.0 2,075,049 + +0.3 2,075,049 + +1.3 2,075,049 + -1.1 2,075,049 + -0.7 2,075,050 - -0.5 2,075,050 - +0.7 2,075,050 - -0.9 2,075,196 + A4249_RS10335 0.45 +0.1 2,075,196 + A4249_RS10335 0.45 +0.3 2,075,196 + A4249_RS10335 0.45 -0.3 2,075,196 + A4249_RS10335 0.45 -1.2 2,075,196 + A4249_RS10335 0.45 -0.2 2,075,196 + A4249_RS10335 0.45 -0.3 2,075,196 + A4249_RS10335 0.45 -0.1 2,075,196 + A4249_RS10335 0.45 -0.4 2,075,196 + A4249_RS10335 0.45 +0.5 2,075,196 + A4249_RS10335 0.45 -0.3 2,075,196 + A4249_RS10335 0.45 +1.4 2,075,196 + A4249_RS10335 0.45 +0.1 2,075,196 + A4249_RS10335 0.45 -0.9 2,075,196 + A4249_RS10335 0.45 +0.7 2,075,196 + A4249_RS10335 0.45 -0.0 2,075,196 + A4249_RS10335 0.45 -0.5 2,075,196 + A4249_RS10335 0.45 -0.4 2,075,196 + A4249_RS10335 0.45 +2.0 2,075,197 - A4249_RS10335 0.45 -0.1 2,075,197 - A4249_RS10335 0.45 +0.7 2,075,197 - A4249_RS10335 0.45 -0.6 2,075,197 - A4249_RS10335 0.45 -1.7 2,075,197 - A4249_RS10335 0.45 +0.6 2,075,197 - A4249_RS10335 0.45 +0.1 2,075,197 - A4249_RS10335 0.45 +0.6 2,075,197 - A4249_RS10335 0.45 +0.6 2,075,197 - A4249_RS10335 0.45 +0.3 2,075,197 - A4249_RS10335 0.45 -0.4 2,075,214 + A4249_RS10335 0.50 -0.2 2,075,214 + A4249_RS10335 0.50 +0.2 2,075,215 - A4249_RS10335 0.50 -0.3 2,075,361 + -0.2 2,075,361 + -0.4 2,075,361 + -0.3 2,075,362 - -0.5 2,075,362 - +0.8 2,075,362 - +0.1 2,075,362 - -0.5 2,075,362 - -0.3 2,075,362 - +0.1 2,075,362 - -0.5 2,075,465 + A4249_RS10340 0.11 -0.7 2,075,465 + A4249_RS10340 0.11 +0.2 2,075,465 + A4249_RS10340 0.11 -0.2 2,075,465 + A4249_RS10340 0.11 +0.4 2,075,466 - A4249_RS10340 0.11 +0.8 2,075,466 - A4249_RS10340 0.11 -0.2 2,076,027 + A4249_RS10340 0.90 -0.2 2,076,086 + -0.1 2,076,114 + -0.6 2,076,185 + -2.2 2,076,185 + +0.2 2,076,185 + -0.5 2,076,186 - +0.2 2,076,186 - +1.3 2,076,186 - -0.0 2,076,186 - -0.4 2,076,186 - +0.3 2,076,190 + +0.2 2,076,190 + -1.4 2,076,190 + +0.8 2,076,191 - +0.7 2,076,191 - +2.0 2,076,191 - -0.3 2,076,191 - +1.6 2,076,191 - +0.1 2,076,196 + -0.1 2,076,196 + -0.3 2,076,196 + -0.1 2,076,197 - +0.6 2,076,197 - -0.3 2,076,197 - +0.4 2,076,197 - -0.5 2,076,197 - -0.2 2,076,278 + A4249_RS10345 0.20 -0.7 2,076,317 + A4249_RS10345 0.29 -0.5 2,076,318 - A4249_RS10345 0.30 -0.4 2,076,370 + A4249_RS10345 0.42 -0.3 2,076,370 + A4249_RS10345 0.42 -0.1 2,076,371 - A4249_RS10345 0.43 +0.5
Or see this region's nucleotide sequence