Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09530

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09520 and A4249_RS09525 are separated by 141 nucleotidesA4249_RS09525 and A4249_RS09530 are separated by 0 nucleotidesA4249_RS09530 and A4249_RS09535 are separated by 21 nucleotides A4249_RS09520: A4249_RS09520 - DNA adenine methylase, at 1,900,416 to 1,901,453 _RS09520 A4249_RS09525: A4249_RS09525 - VIT family protein, at 1,901,595 to 1,902,284 _RS09525 A4249_RS09530: A4249_RS09530 - TonB-dependent receptor, at 1,902,285 to 1,904,660 _RS09530 A4249_RS09535: A4249_RS09535 - FecR domain-containing protein, at 1,904,682 to 1,905,653 _RS09535 Position (kb) 1902 1903 1904 1905Strain fitness (log2 ratio) -2 -1 0 1at 1901.442 kb on - strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.482 kb on - strandat 1901.482 kb on - strandat 1901.540 kb on + strandat 1901.540 kb on + strandat 1901.581 kb on + strandat 1901.581 kb on + strandat 1901.581 kb on + strandat 1901.582 kb on - strandat 1901.606 kb on + strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.734 kb on + strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.755 kb on + strand, within A4249_RS09525at 1901.755 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.996 kb on + strand, within A4249_RS09525at 1901.997 kb on - strand, within A4249_RS09525at 1901.997 kb on - strand, within A4249_RS09525at 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.469 kb on + strandat 1902.470 kb on - strandat 1902.526 kb on + strand, within A4249_RS09530at 1902.997 kb on + strand, within A4249_RS09530at 1902.997 kb on + strand, within A4249_RS09530at 1902.997 kb on + strand, within A4249_RS09530at 1902.998 kb on - strand, within A4249_RS09530at 1902.998 kb on - strand, within A4249_RS09530at 1902.998 kb on - strand, within A4249_RS09530at 1903.021 kb on + strand, within A4249_RS09530at 1903.021 kb on + strand, within A4249_RS09530at 1903.022 kb on - strand, within A4249_RS09530at 1903.168 kb on + strand, within A4249_RS09530at 1903.169 kb on - strand, within A4249_RS09530at 1903.169 kb on - strand, within A4249_RS09530at 1903.169 kb on - strand, within A4249_RS09530at 1903.279 kb on + strand, within A4249_RS09530at 1903.279 kb on + strand, within A4249_RS09530at 1903.279 kb on + strand, within A4249_RS09530at 1903.280 kb on - strand, within A4249_RS09530at 1903.280 kb on - strand, within A4249_RS09530at 1903.280 kb on - strand, within A4249_RS09530at 1903.280 kb on - strand, within A4249_RS09530at 1903.397 kb on + strand, within A4249_RS09530at 1903.432 kb on + strand, within A4249_RS09530at 1903.432 kb on + strand, within A4249_RS09530at 1903.432 kb on + strand, within A4249_RS09530at 1903.432 kb on + strand, within A4249_RS09530at 1903.433 kb on - strand, within A4249_RS09530at 1903.433 kb on - strand, within A4249_RS09530at 1903.528 kb on + strand, within A4249_RS09530at 1903.567 kb on + strand, within A4249_RS09530at 1903.567 kb on + strand, within A4249_RS09530at 1903.568 kb on - strand, within A4249_RS09530at 1903.641 kb on + strand, within A4249_RS09530at 1903.641 kb on + strand, within A4249_RS09530at 1903.641 kb on + strand, within A4249_RS09530at 1903.641 kb on + strand, within A4249_RS09530at 1903.641 kb on + strand, within A4249_RS09530at 1903.642 kb on - strand, within A4249_RS09530at 1903.709 kb on + strand, within A4249_RS09530at 1903.710 kb on - strand, within A4249_RS09530at 1903.710 kb on - strand, within A4249_RS09530at 1903.741 kb on + strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.762 kb on + strand, within A4249_RS09530at 1903.879 kb on + strand, within A4249_RS09530at 1903.879 kb on + strand, within A4249_RS09530at 1903.880 kb on - strand, within A4249_RS09530at 1903.880 kb on - strand, within A4249_RS09530at 1903.945 kb on + strand, within A4249_RS09530at 1904.023 kb on + strand, within A4249_RS09530at 1904.023 kb on + strand, within A4249_RS09530at 1904.024 kb on - strand, within A4249_RS09530at 1904.024 kb on - strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.050 kb on - strand, within A4249_RS09530at 1904.175 kb on + strand, within A4249_RS09530at 1904.175 kb on + strand, within A4249_RS09530at 1904.176 kb on - strand, within A4249_RS09530at 1904.176 kb on - strand, within A4249_RS09530at 1904.231 kb on - strand, within A4249_RS09530at 1904.374 kb on + strand, within A4249_RS09530at 1904.656 kb on - strandat 1904.656 kb on - strandat 1904.694 kb on + strandat 1904.694 kb on + strandat 1904.887 kb on + strand, within A4249_RS09535at 1904.887 kb on + strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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1,901,442 - +0.4
1,901,443 + -0.9
1,901,443 + -0.3
1,901,443 + -0.1
1,901,443 + +0.1
1,901,443 + -1.0
1,901,444 - +0.1
1,901,444 - -1.0
1,901,444 - +0.1
1,901,444 - +1.7
1,901,444 - -1.7
1,901,444 - -0.9
1,901,444 - +0.1
1,901,444 - -0.1
1,901,444 - -0.0
1,901,444 - +1.1
1,901,482 - -0.5
1,901,482 - +1.0
1,901,540 + +0.8
1,901,540 + -0.3
1,901,581 + +1.2
1,901,581 + +0.4
1,901,581 + +0.2
1,901,582 - -0.8
1,901,606 + +0.1
1,901,607 - -0.3
1,901,607 - -0.5
1,901,607 - +0.3
1,901,607 - +0.3
1,901,607 - -0.2
1,901,607 - -0.2
1,901,607 - +0.5
1,901,734 + A4249_RS09525 0.20 -0.2
1,901,735 - A4249_RS09525 0.20 -0.8
1,901,735 - A4249_RS09525 0.20 +0.3
1,901,735 - A4249_RS09525 0.20 -1.9
1,901,755 + A4249_RS09525 0.23 -1.1
1,901,755 + A4249_RS09525 0.23 +0.2
1,901,790 + A4249_RS09525 0.28 +0.9
1,901,790 + A4249_RS09525 0.28 -0.7
1,901,790 + A4249_RS09525 0.28 +0.2
1,901,790 + A4249_RS09525 0.28 -0.8
1,901,790 + A4249_RS09525 0.28 -0.5
1,901,790 + A4249_RS09525 0.28 +1.0
1,901,790 + A4249_RS09525 0.28 +0.5
1,901,791 - A4249_RS09525 0.28 -0.2
1,901,791 - A4249_RS09525 0.28 -1.3
1,901,791 - A4249_RS09525 0.28 -0.2
1,901,791 - A4249_RS09525 0.28 +0.5
1,901,791 - A4249_RS09525 0.28 +0.0
1,901,791 - A4249_RS09525 0.28 -0.5
1,901,791 - A4249_RS09525 0.28 -0.5
1,901,791 - A4249_RS09525 0.28 -1.2
1,901,791 - A4249_RS09525 0.28 -0.9
1,901,898 + A4249_RS09525 0.44 -1.4
1,901,898 + A4249_RS09525 0.44 -0.2
1,901,898 + A4249_RS09525 0.44 -0.3
1,901,898 + A4249_RS09525 0.44 -0.4
1,901,898 + A4249_RS09525 0.44 +0.7
1,901,898 + A4249_RS09525 0.44 -1.2
1,901,898 + A4249_RS09525 0.44 -0.7
1,901,898 + A4249_RS09525 0.44 -0.3
1,901,898 + A4249_RS09525 0.44 -0.1
1,901,898 + A4249_RS09525 0.44 +0.1
1,901,898 + A4249_RS09525 0.44 +0.3
1,901,898 + A4249_RS09525 0.44 -1.7
1,901,899 - A4249_RS09525 0.44 -1.0
1,901,899 - A4249_RS09525 0.44 +0.3
1,901,899 - A4249_RS09525 0.44 +0.0
1,901,899 - A4249_RS09525 0.44 +0.6
1,901,899 - A4249_RS09525 0.44 -0.0
1,901,899 - A4249_RS09525 0.44 -0.4
1,901,899 - A4249_RS09525 0.44 +0.5
1,901,899 - A4249_RS09525 0.44 -0.2
1,901,996 + A4249_RS09525 0.58 +0.2
1,901,997 - A4249_RS09525 0.58 -0.4
1,901,997 - A4249_RS09525 0.58 -0.5
1,902,355 + -0.4
1,902,355 + -0.8
1,902,355 + +0.1
1,902,355 + -0.0
1,902,356 - +0.1
1,902,356 - -0.2
1,902,356 - -1.4
1,902,356 - +0.1
1,902,356 - +0.2
1,902,469 + +0.2
1,902,470 - -0.1
1,902,526 + A4249_RS09530 0.10 +0.3
1,902,997 + A4249_RS09530 0.30 +0.7
1,902,997 + A4249_RS09530 0.30 +0.2
1,902,997 + A4249_RS09530 0.30 -0.5
1,902,998 - A4249_RS09530 0.30 -0.4
1,902,998 - A4249_RS09530 0.30 -0.3
1,902,998 - A4249_RS09530 0.30 -1.1
1,903,021 + A4249_RS09530 0.31 +1.0
1,903,021 + A4249_RS09530 0.31 +0.1
1,903,022 - A4249_RS09530 0.31 +0.3
1,903,168 + A4249_RS09530 0.37 -0.9
1,903,169 - A4249_RS09530 0.37 +0.2
1,903,169 - A4249_RS09530 0.37 -0.2
1,903,169 - A4249_RS09530 0.37 +1.4
1,903,279 + A4249_RS09530 0.42 +0.6
1,903,279 + A4249_RS09530 0.42 +0.5
1,903,279 + A4249_RS09530 0.42 -0.7
1,903,280 - A4249_RS09530 0.42 +1.0
1,903,280 - A4249_RS09530 0.42 -1.1
1,903,280 - A4249_RS09530 0.42 -0.4
1,903,280 - A4249_RS09530 0.42 -0.8
1,903,397 + A4249_RS09530 0.47 -0.2
1,903,432 + A4249_RS09530 0.48 -1.4
1,903,432 + A4249_RS09530 0.48 +1.0
1,903,432 + A4249_RS09530 0.48 +0.3
1,903,432 + A4249_RS09530 0.48 -0.5
1,903,433 - A4249_RS09530 0.48 -0.3
1,903,433 - A4249_RS09530 0.48 +0.8
1,903,528 + A4249_RS09530 0.52 -0.2
1,903,567 + A4249_RS09530 0.54 +0.1
1,903,567 + A4249_RS09530 0.54 -0.7
1,903,568 - A4249_RS09530 0.54 -0.2
1,903,641 + A4249_RS09530 0.57 +0.7
1,903,641 + A4249_RS09530 0.57 -0.9
1,903,641 + A4249_RS09530 0.57 -0.7
1,903,641 + A4249_RS09530 0.57 -0.3
1,903,641 + A4249_RS09530 0.57 -0.4
1,903,642 - A4249_RS09530 0.57 -0.3
1,903,709 + A4249_RS09530 0.60 +0.2
1,903,710 - A4249_RS09530 0.60 +1.0
1,903,710 - A4249_RS09530 0.60 +0.7
1,903,741 + A4249_RS09530 0.61 +0.6
1,903,742 - A4249_RS09530 0.61 -0.9
1,903,742 - A4249_RS09530 0.61 +0.1
1,903,742 - A4249_RS09530 0.61 +0.0
1,903,742 - A4249_RS09530 0.61 -1.5
1,903,762 + A4249_RS09530 0.62 -0.7
1,903,879 + A4249_RS09530 0.67 -0.3
1,903,879 + A4249_RS09530 0.67 -2.5
1,903,880 - A4249_RS09530 0.67 -0.7
1,903,880 - A4249_RS09530 0.67 +0.1
1,903,945 + A4249_RS09530 0.70 -0.2
1,904,023 + A4249_RS09530 0.73 +0.6
1,904,023 + A4249_RS09530 0.73 +0.7
1,904,024 - A4249_RS09530 0.73 -0.3
1,904,024 - A4249_RS09530 0.73 -0.2
1,904,047 + A4249_RS09530 0.74 -0.2
1,904,047 + A4249_RS09530 0.74 -2.1
1,904,047 + A4249_RS09530 0.74 -0.6
1,904,048 - A4249_RS09530 0.74 -0.1
1,904,048 - A4249_RS09530 0.74 -0.6
1,904,048 - A4249_RS09530 0.74 -0.2
1,904,048 - A4249_RS09530 0.74 +0.1
1,904,048 - A4249_RS09530 0.74 +0.7
1,904,048 - A4249_RS09530 0.74 -0.1
1,904,048 - A4249_RS09530 0.74 +0.7
1,904,050 - A4249_RS09530 0.74 -0.1
1,904,175 + A4249_RS09530 0.80 +0.6
1,904,175 + A4249_RS09530 0.80 +0.2
1,904,176 - A4249_RS09530 0.80 -1.0
1,904,176 - A4249_RS09530 0.80 +0.6
1,904,231 - A4249_RS09530 0.82 -0.7
1,904,374 + A4249_RS09530 0.88 -1.4
1,904,656 - -1.1
1,904,656 - -0.2
1,904,694 + -0.9
1,904,694 + +0.1
1,904,887 + A4249_RS09535 0.21 +0.4
1,904,887 + A4249_RS09535 0.21 -0.3
1,904,888 - A4249_RS09535 0.21 -1.3
1,904,888 - A4249_RS09535 0.21 -1.4
1,905,304 + A4249_RS09535 0.64 +0.4
1,905,304 + A4249_RS09535 0.64 +0.2
1,905,304 + A4249_RS09535 0.64 -0.9
1,905,304 + A4249_RS09535 0.64 +0.6
1,905,305 - A4249_RS09535 0.64 +0.6
1,905,305 - A4249_RS09535 0.64 -0.1
1,905,305 - A4249_RS09535 0.64 +0.2
1,905,305 - A4249_RS09535 0.64 +0.1

Or see this region's nucleotide sequence