Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09175

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09165 and A4249_RS09170 are separated by 18 nucleotidesA4249_RS09170 and A4249_RS09175 are separated by 10 nucleotidesA4249_RS09175 and A4249_RS09180 are separated by 30 nucleotidesA4249_RS09180 and A4249_RS09185 are separated by 101 nucleotides A4249_RS09165: A4249_RS09165 - aldo/keto reductase, at 1,835,101 to 1,835,943 _RS09165 A4249_RS09170: A4249_RS09170 - Pr6Pr family membrane protein, at 1,835,962 to 1,836,624 _RS09170 A4249_RS09175: A4249_RS09175 - UbiD family decarboxylase, at 1,836,635 to 1,838,164 _RS09175 A4249_RS09180: A4249_RS09180 - hypothetical protein, at 1,838,195 to 1,838,827 _RS09180 A4249_RS09185: A4249_RS09185 - M14 family metallopeptidase, at 1,838,929 to 1,840,698 _RS09185 Position (kb) 1836 1837 1838 1839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1835.775 kb on + strand, within A4249_RS09165at 1835.776 kb on - strand, within A4249_RS09165at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.040 kb on + strand, within A4249_RS09170at 1836.041 kb on - strand, within A4249_RS09170at 1836.097 kb on + strand, within A4249_RS09170at 1836.097 kb on + strand, within A4249_RS09170at 1836.097 kb on + strand, within A4249_RS09170at 1836.098 kb on - strand, within A4249_RS09170at 1836.098 kb on - strand, within A4249_RS09170at 1836.098 kb on - strand, within A4249_RS09170at 1836.098 kb on - strand, within A4249_RS09170at 1836.119 kb on + strand, within A4249_RS09170at 1836.119 kb on + strand, within A4249_RS09170at 1836.120 kb on - strand, within A4249_RS09170at 1836.120 kb on - strand, within A4249_RS09170at 1836.120 kb on - strand, within A4249_RS09170at 1836.161 kb on + strand, within A4249_RS09170at 1836.161 kb on + strand, within A4249_RS09170at 1836.161 kb on + strand, within A4249_RS09170at 1836.161 kb on + strand, within A4249_RS09170at 1836.161 kb on + strand, within A4249_RS09170at 1836.162 kb on - strand, within A4249_RS09170at 1836.162 kb on - strand, within A4249_RS09170at 1836.162 kb on - strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.226 kb on + strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.227 kb on - strand, within A4249_RS09170at 1836.250 kb on + strand, within A4249_RS09170at 1836.250 kb on + strand, within A4249_RS09170at 1836.250 kb on + strand, within A4249_RS09170at 1836.250 kb on + strand, within A4249_RS09170at 1836.250 kb on + strand, within A4249_RS09170at 1836.251 kb on - strand, within A4249_RS09170at 1836.251 kb on - strand, within A4249_RS09170at 1836.251 kb on - strand, within A4249_RS09170at 1836.251 kb on - strand, within A4249_RS09170at 1836.271 kb on + strand, within A4249_RS09170at 1836.272 kb on - strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.319 kb on + strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.320 kb on - strand, within A4249_RS09170at 1836.469 kb on + strand, within A4249_RS09170at 1836.470 kb on - strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.471 kb on + strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.472 kb on - strand, within A4249_RS09170at 1836.622 kb on + strandat 1836.622 kb on + strandat 1836.622 kb on + strandat 1836.623 kb on - strandat 1836.641 kb on + strandat 1837.438 kb on + strand, within A4249_RS09175at 1837.439 kb on - strand, within A4249_RS09175at 1837.613 kb on + strand, within A4249_RS09175at 1837.827 kb on - strand, within A4249_RS09175at 1837.974 kb on - strand, within A4249_RS09175at 1837.974 kb on - strand, within A4249_RS09175at 1838.162 kb on + strandat 1838.162 kb on + strandat 1838.162 kb on + strandat 1838.163 kb on - strandat 1838.163 kb on - strandat 1838.163 kb on - strandat 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.447 kb on + strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.448 kb on - strand, within A4249_RS09180at 1838.744 kb on + strand, within A4249_RS09180at 1838.744 kb on + strand, within A4249_RS09180at 1838.744 kb on + strand, within A4249_RS09180at 1838.744 kb on + strand, within A4249_RS09180at 1838.745 kb on - strand, within A4249_RS09180at 1838.913 kb on + strandat 1838.913 kb on + strandat 1838.914 kb on - strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.085 kb on + strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strandat 1839.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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1,835,775 + A4249_RS09165 0.80 -2.3
1,835,776 - A4249_RS09165 0.80 +0.5
1,836,040 + A4249_RS09170 0.12 -0.7
1,836,040 + A4249_RS09170 0.12 -0.1
1,836,040 + A4249_RS09170 0.12 +0.3
1,836,040 + A4249_RS09170 0.12 -1.3
1,836,040 + A4249_RS09170 0.12 +0.2
1,836,040 + A4249_RS09170 0.12 +0.1
1,836,040 + A4249_RS09170 0.12 +0.8
1,836,041 - A4249_RS09170 0.12 +1.3
1,836,097 + A4249_RS09170 0.20 -0.1
1,836,097 + A4249_RS09170 0.20 -1.1
1,836,097 + A4249_RS09170 0.20 -1.0
1,836,098 - A4249_RS09170 0.21 +0.9
1,836,098 - A4249_RS09170 0.21 -0.6
1,836,098 - A4249_RS09170 0.21 -0.3
1,836,098 - A4249_RS09170 0.21 -0.9
1,836,119 + A4249_RS09170 0.24 -0.4
1,836,119 + A4249_RS09170 0.24 -0.3
1,836,120 - A4249_RS09170 0.24 -1.2
1,836,120 - A4249_RS09170 0.24 +0.1
1,836,120 - A4249_RS09170 0.24 -0.2
1,836,161 + A4249_RS09170 0.30 -0.4
1,836,161 + A4249_RS09170 0.30 -0.9
1,836,161 + A4249_RS09170 0.30 +0.7
1,836,161 + A4249_RS09170 0.30 -0.5
1,836,161 + A4249_RS09170 0.30 +1.3
1,836,162 - A4249_RS09170 0.30 +1.0
1,836,162 - A4249_RS09170 0.30 -1.0
1,836,162 - A4249_RS09170 0.30 -0.1
1,836,226 + A4249_RS09170 0.40 -0.7
1,836,226 + A4249_RS09170 0.40 +0.1
1,836,226 + A4249_RS09170 0.40 +0.4
1,836,226 + A4249_RS09170 0.40 -0.5
1,836,226 + A4249_RS09170 0.40 -0.5
1,836,226 + A4249_RS09170 0.40 -1.0
1,836,226 + A4249_RS09170 0.40 -0.7
1,836,226 + A4249_RS09170 0.40 -0.9
1,836,226 + A4249_RS09170 0.40 -0.5
1,836,226 + A4249_RS09170 0.40 +0.4
1,836,226 + A4249_RS09170 0.40 +0.4
1,836,226 + A4249_RS09170 0.40 -0.5
1,836,226 + A4249_RS09170 0.40 +0.3
1,836,226 + A4249_RS09170 0.40 -0.2
1,836,227 - A4249_RS09170 0.40 -0.5
1,836,227 - A4249_RS09170 0.40 -0.5
1,836,227 - A4249_RS09170 0.40 -0.3
1,836,227 - A4249_RS09170 0.40 +0.6
1,836,227 - A4249_RS09170 0.40 -0.7
1,836,227 - A4249_RS09170 0.40 +0.3
1,836,227 - A4249_RS09170 0.40 -0.9
1,836,227 - A4249_RS09170 0.40 +1.7
1,836,227 - A4249_RS09170 0.40 +0.1
1,836,227 - A4249_RS09170 0.40 +0.3
1,836,227 - A4249_RS09170 0.40 +0.7
1,836,227 - A4249_RS09170 0.40 -0.8
1,836,250 + A4249_RS09170 0.43 -0.5
1,836,250 + A4249_RS09170 0.43 +0.3
1,836,250 + A4249_RS09170 0.43 +0.6
1,836,250 + A4249_RS09170 0.43 +0.2
1,836,250 + A4249_RS09170 0.43 -0.2
1,836,251 - A4249_RS09170 0.44 -0.6
1,836,251 - A4249_RS09170 0.44 -0.3
1,836,251 - A4249_RS09170 0.44 -0.1
1,836,251 - A4249_RS09170 0.44 -0.2
1,836,271 + A4249_RS09170 0.47 +2.3
1,836,272 - A4249_RS09170 0.47 +1.4
1,836,319 + A4249_RS09170 0.54 -1.1
1,836,319 + A4249_RS09170 0.54 -0.4
1,836,319 + A4249_RS09170 0.54 +0.0
1,836,319 + A4249_RS09170 0.54 -0.7
1,836,319 + A4249_RS09170 0.54 -0.4
1,836,319 + A4249_RS09170 0.54 -0.2
1,836,319 + A4249_RS09170 0.54 -0.4
1,836,319 + A4249_RS09170 0.54 -0.3
1,836,319 + A4249_RS09170 0.54 +0.0
1,836,319 + A4249_RS09170 0.54 +0.0
1,836,319 + A4249_RS09170 0.54 -1.9
1,836,320 - A4249_RS09170 0.54 -0.5
1,836,320 - A4249_RS09170 0.54 -0.8
1,836,320 - A4249_RS09170 0.54 +0.3
1,836,320 - A4249_RS09170 0.54 -0.5
1,836,320 - A4249_RS09170 0.54 -0.7
1,836,320 - A4249_RS09170 0.54 -0.5
1,836,320 - A4249_RS09170 0.54 -1.4
1,836,320 - A4249_RS09170 0.54 +0.9
1,836,469 + A4249_RS09170 0.76 +0.0
1,836,470 - A4249_RS09170 0.77 -0.7
1,836,471 + A4249_RS09170 0.77 +1.2
1,836,471 + A4249_RS09170 0.77 -1.2
1,836,471 + A4249_RS09170 0.77 -0.6
1,836,471 + A4249_RS09170 0.77 -0.4
1,836,471 + A4249_RS09170 0.77 -1.1
1,836,471 + A4249_RS09170 0.77 -1.5
1,836,471 + A4249_RS09170 0.77 +0.7
1,836,471 + A4249_RS09170 0.77 +0.1
1,836,472 - A4249_RS09170 0.77 +0.9
1,836,472 - A4249_RS09170 0.77 -1.1
1,836,472 - A4249_RS09170 0.77 +0.9
1,836,472 - A4249_RS09170 0.77 +0.1
1,836,472 - A4249_RS09170 0.77 -0.1
1,836,472 - A4249_RS09170 0.77 +0.4
1,836,472 - A4249_RS09170 0.77 -0.0
1,836,472 - A4249_RS09170 0.77 +0.1
1,836,472 - A4249_RS09170 0.77 -0.3
1,836,472 - A4249_RS09170 0.77 -0.5
1,836,472 - A4249_RS09170 0.77 -0.2
1,836,472 - A4249_RS09170 0.77 -0.4
1,836,622 + +0.3
1,836,622 + -0.3
1,836,622 + -0.4
1,836,623 - -0.2
1,836,641 + +0.5
1,837,438 + A4249_RS09175 0.52 +1.7
1,837,439 - A4249_RS09175 0.53 +1.1
1,837,613 + A4249_RS09175 0.64 +2.7
1,837,827 - A4249_RS09175 0.78 +0.4
1,837,974 - A4249_RS09175 0.88 +2.7
1,837,974 - A4249_RS09175 0.88 +1.1
1,838,162 + -1.9
1,838,162 + -0.9
1,838,162 + +0.4
1,838,163 - -0.4
1,838,163 - +0.2
1,838,163 - -0.7
1,838,447 + A4249_RS09180 0.40 +0.8
1,838,447 + A4249_RS09180 0.40 -0.7
1,838,447 + A4249_RS09180 0.40 +0.0
1,838,447 + A4249_RS09180 0.40 +1.0
1,838,447 + A4249_RS09180 0.40 -3.2
1,838,447 + A4249_RS09180 0.40 +0.2
1,838,447 + A4249_RS09180 0.40 -0.3
1,838,447 + A4249_RS09180 0.40 +0.6
1,838,447 + A4249_RS09180 0.40 +0.0
1,838,447 + A4249_RS09180 0.40 +1.0
1,838,447 + A4249_RS09180 0.40 +0.1
1,838,447 + A4249_RS09180 0.40 -0.5
1,838,448 - A4249_RS09180 0.40 -0.2
1,838,448 - A4249_RS09180 0.40 +0.4
1,838,448 - A4249_RS09180 0.40 +0.4
1,838,448 - A4249_RS09180 0.40 -0.3
1,838,448 - A4249_RS09180 0.40 -0.8
1,838,448 - A4249_RS09180 0.40 -0.6
1,838,448 - A4249_RS09180 0.40 +0.4
1,838,448 - A4249_RS09180 0.40 -0.3
1,838,448 - A4249_RS09180 0.40 +0.2
1,838,448 - A4249_RS09180 0.40 +1.1
1,838,448 - A4249_RS09180 0.40 -1.1
1,838,744 + A4249_RS09180 0.87 -0.5
1,838,744 + A4249_RS09180 0.87 -0.6
1,838,744 + A4249_RS09180 0.87 +1.1
1,838,744 + A4249_RS09180 0.87 -0.6
1,838,745 - A4249_RS09180 0.87 +0.7
1,838,913 + +0.1
1,838,913 + +0.5
1,838,914 - +0.1
1,839,085 + +0.9
1,839,085 + +0.9
1,839,085 + -2.1
1,839,085 + -1.7
1,839,085 + +0.4
1,839,085 + -0.5
1,839,085 + +0.2
1,839,085 + -0.5
1,839,085 + -0.7
1,839,085 + -0.8
1,839,086 - -0.2
1,839,086 - -0.1
1,839,086 - +1.3
1,839,086 - +0.6
1,839,086 - -0.7
1,839,086 - -0.4
1,839,086 - +0.9
1,839,086 - -0.5
1,839,086 - -0.3
1,839,086 - +1.0

Or see this region's nucleotide sequence