Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08375

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08365 and A4249_RS08370 are separated by 36 nucleotidesA4249_RS08370 and A4249_RS08375 are separated by 2 nucleotidesA4249_RS08375 and A4249_RS08380 are separated by 106 nucleotidesA4249_RS08380 and A4249_RS08385 overlap by 4 nucleotides A4249_RS08365: A4249_RS08365 - nicotinate phosphoribosyltransferase, at 1,678,622 to 1,679,917 _RS08365 A4249_RS08370: A4249_RS08370 - polysaccharide deacetylase family protein, at 1,679,954 to 1,680,694 _RS08370 A4249_RS08375: A4249_RS08375 - hypothetical protein, at 1,680,697 to 1,681,593 _RS08375 A4249_RS08380: A4249_RS08380 - RidA family protein, at 1,681,700 to 1,682,158 _RS08380 A4249_RS08385: A4249_RS08385 - GNAT family N-acetyltransferase, at 1,682,155 to 1,683,301 _RS08385 Position (kb) 1680 1681 1682Strain fitness (log2 ratio) -2 -1 0 1 2at 1679.864 kb on + strandat 1679.929 kb on - strandat 1679.929 kb on - strandat 1679.997 kb on - strandat 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.129 kb on - strand, within A4249_RS08370at 1680.129 kb on - strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.237 kb on - strand, within A4249_RS08370at 1680.237 kb on - strand, within A4249_RS08370at 1680.591 kb on - strand, within A4249_RS08370at 1680.774 kb on - strandat 1680.936 kb on - strand, within A4249_RS08375at 1680.936 kb on - strand, within A4249_RS08375at 1681.057 kb on - strand, within A4249_RS08375at 1681.256 kb on + strand, within A4249_RS08375at 1681.257 kb on - strand, within A4249_RS08375at 1681.257 kb on - strand, within A4249_RS08375at 1681.310 kb on + strand, within A4249_RS08375at 1681.311 kb on - strand, within A4249_RS08375at 1681.587 kb on + strandat 1681.587 kb on + strandat 1681.588 kb on - strandat 1681.629 kb on + strandat 1681.629 kb on + strandat 1681.630 kb on - strandat 1681.630 kb on - strandat 1681.684 kb on + strandat 1681.685 kb on - strandat 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.769 kb on + strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.770 kb on - strand, within A4249_RS08380at 1681.778 kb on + strand, within A4249_RS08380at 1681.778 kb on + strand, within A4249_RS08380at 1681.779 kb on - strand, within A4249_RS08380at 1681.779 kb on - strand, within A4249_RS08380at 1682.103 kb on - strand, within A4249_RS08380at 1682.245 kb on - strandat 1682.245 kb on - strandat 1682.348 kb on + strand, within A4249_RS08385at 1682.368 kb on + strand, within A4249_RS08385at 1682.369 kb on - strand, within A4249_RS08385at 1682.369 kb on - strand, within A4249_RS08385at 1682.369 kb on - strand, within A4249_RS08385at 1682.369 kb on - strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.395 kb on + strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.396 kb on - strand, within A4249_RS08385at 1682.425 kb on + strand, within A4249_RS08385at 1682.425 kb on + strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.426 kb on - strand, within A4249_RS08385at 1682.446 kb on + strand, within A4249_RS08385at 1682.446 kb on + strand, within A4249_RS08385at 1682.446 kb on + strand, within A4249_RS08385at 1682.447 kb on - strand, within A4249_RS08385at 1682.449 kb on + strand, within A4249_RS08385at 1682.449 kb on + strand, within A4249_RS08385at 1682.450 kb on - strand, within A4249_RS08385at 1682.450 kb on - strand, within A4249_RS08385at 1682.450 kb on - strand, within A4249_RS08385at 1682.450 kb on - strand, within A4249_RS08385

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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1,679,864 + -0.7
1,679,929 - +0.3
1,679,929 - +0.2
1,679,997 - +1.3
1,680,125 + A4249_RS08370 0.23 +0.3
1,680,125 + A4249_RS08370 0.23 +0.6
1,680,125 + A4249_RS08370 0.23 +0.1
1,680,125 + A4249_RS08370 0.23 +1.5
1,680,125 + A4249_RS08370 0.23 +1.7
1,680,125 + A4249_RS08370 0.23 +0.8
1,680,125 + A4249_RS08370 0.23 +1.4
1,680,125 + A4249_RS08370 0.23 +0.7
1,680,125 + A4249_RS08370 0.23 -1.1
1,680,125 + A4249_RS08370 0.23 -1.4
1,680,125 + A4249_RS08370 0.23 -0.1
1,680,125 + A4249_RS08370 0.23 +0.3
1,680,126 - A4249_RS08370 0.23 +0.7
1,680,126 - A4249_RS08370 0.23 +0.6
1,680,126 - A4249_RS08370 0.23 -0.1
1,680,126 - A4249_RS08370 0.23 -1.9
1,680,126 - A4249_RS08370 0.23 +0.7
1,680,126 - A4249_RS08370 0.23 +0.2
1,680,126 - A4249_RS08370 0.23 +0.4
1,680,128 + A4249_RS08370 0.23 +2.4
1,680,128 + A4249_RS08370 0.23 -1.1
1,680,128 + A4249_RS08370 0.23 -0.1
1,680,128 + A4249_RS08370 0.23 -0.7
1,680,128 + A4249_RS08370 0.23 +0.1
1,680,129 - A4249_RS08370 0.24 -0.1
1,680,129 - A4249_RS08370 0.24 +1.9
1,680,236 + A4249_RS08370 0.38 +0.4
1,680,236 + A4249_RS08370 0.38 +1.5
1,680,236 + A4249_RS08370 0.38 +0.6
1,680,236 + A4249_RS08370 0.38 -0.6
1,680,236 + A4249_RS08370 0.38 +1.5
1,680,237 - A4249_RS08370 0.38 +0.1
1,680,237 - A4249_RS08370 0.38 +0.6
1,680,591 - A4249_RS08370 0.86 +1.1
1,680,774 - +0.6
1,680,936 - A4249_RS08375 0.27 -0.6
1,680,936 - A4249_RS08375 0.27 -0.3
1,681,057 - A4249_RS08375 0.40 +0.7
1,681,256 + A4249_RS08375 0.62 +1.4
1,681,257 - A4249_RS08375 0.62 +1.7
1,681,257 - A4249_RS08375 0.62 -0.2
1,681,310 + A4249_RS08375 0.68 -0.6
1,681,311 - A4249_RS08375 0.68 -0.4
1,681,587 + -0.4
1,681,587 + -0.4
1,681,588 - +0.2
1,681,629 + -0.7
1,681,629 + -1.0
1,681,630 - -0.2
1,681,630 - -0.4
1,681,684 + +0.1
1,681,685 - +0.5
1,681,769 + A4249_RS08380 0.15 +0.1
1,681,769 + A4249_RS08380 0.15 -0.6
1,681,769 + A4249_RS08380 0.15 +0.7
1,681,769 + A4249_RS08380 0.15 -0.3
1,681,769 + A4249_RS08380 0.15 +1.7
1,681,769 + A4249_RS08380 0.15 +1.1
1,681,769 + A4249_RS08380 0.15 -0.3
1,681,770 - A4249_RS08380 0.15 +0.3
1,681,770 - A4249_RS08380 0.15 -0.0
1,681,770 - A4249_RS08380 0.15 +0.9
1,681,770 - A4249_RS08380 0.15 -0.1
1,681,770 - A4249_RS08380 0.15 +0.4
1,681,770 - A4249_RS08380 0.15 -0.0
1,681,770 - A4249_RS08380 0.15 +0.7
1,681,778 + A4249_RS08380 0.17 +0.7
1,681,778 + A4249_RS08380 0.17 +0.8
1,681,779 - A4249_RS08380 0.17 +1.0
1,681,779 - A4249_RS08380 0.17 +0.7
1,682,103 - A4249_RS08380 0.88 -0.7
1,682,245 - -0.1
1,682,245 - +0.4
1,682,348 + A4249_RS08385 0.17 -1.0
1,682,368 + A4249_RS08385 0.19 +1.5
1,682,369 - A4249_RS08385 0.19 +0.6
1,682,369 - A4249_RS08385 0.19 +0.1
1,682,369 - A4249_RS08385 0.19 +0.6
1,682,369 - A4249_RS08385 0.19 +0.0
1,682,395 + A4249_RS08385 0.21 -0.1
1,682,395 + A4249_RS08385 0.21 -1.0
1,682,395 + A4249_RS08385 0.21 +0.2
1,682,395 + A4249_RS08385 0.21 -0.7
1,682,395 + A4249_RS08385 0.21 -0.5
1,682,395 + A4249_RS08385 0.21 +0.1
1,682,395 + A4249_RS08385 0.21 +0.0
1,682,395 + A4249_RS08385 0.21 -0.7
1,682,395 + A4249_RS08385 0.21 +0.1
1,682,395 + A4249_RS08385 0.21 +0.5
1,682,395 + A4249_RS08385 0.21 -0.2
1,682,395 + A4249_RS08385 0.21 -0.7
1,682,395 + A4249_RS08385 0.21 -1.3
1,682,396 - A4249_RS08385 0.21 -0.5
1,682,396 - A4249_RS08385 0.21 +0.7
1,682,396 - A4249_RS08385 0.21 -0.9
1,682,396 - A4249_RS08385 0.21 +0.6
1,682,396 - A4249_RS08385 0.21 -0.1
1,682,396 - A4249_RS08385 0.21 +0.5
1,682,396 - A4249_RS08385 0.21 +0.6
1,682,396 - A4249_RS08385 0.21 +0.0
1,682,396 - A4249_RS08385 0.21 +0.0
1,682,425 + A4249_RS08385 0.24 -2.2
1,682,425 + A4249_RS08385 0.24 -0.2
1,682,426 - A4249_RS08385 0.24 -0.5
1,682,426 - A4249_RS08385 0.24 -0.2
1,682,426 - A4249_RS08385 0.24 -0.7
1,682,426 - A4249_RS08385 0.24 +0.4
1,682,426 - A4249_RS08385 0.24 +0.3
1,682,426 - A4249_RS08385 0.24 -0.3
1,682,446 + A4249_RS08385 0.25 +0.6
1,682,446 + A4249_RS08385 0.25 -0.1
1,682,446 + A4249_RS08385 0.25 +0.6
1,682,447 - A4249_RS08385 0.25 +1.0
1,682,449 + A4249_RS08385 0.26 -0.3
1,682,449 + A4249_RS08385 0.26 -0.0
1,682,450 - A4249_RS08385 0.26 +0.3
1,682,450 - A4249_RS08385 0.26 +0.2
1,682,450 - A4249_RS08385 0.26 -0.4
1,682,450 - A4249_RS08385 0.26 -0.6

Or see this region's nucleotide sequence