Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06785

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06775 and A4249_RS06780 overlap by 11 nucleotidesA4249_RS06780 and A4249_RS06785 overlap by 4 nucleotidesA4249_RS06785 and A4249_RS06790 are separated by 1 nucleotides A4249_RS06775: A4249_RS06775 - guanylate kinase, at 1,380,986 to 1,381,627 _RS06775 A4249_RS06780: A4249_RS06780 - YicC family protein, at 1,381,617 to 1,382,501 _RS06780 A4249_RS06785: A4249_RS06785 - endolytic transglycosylase MltG, at 1,382,498 to 1,383,658 _RS06785 A4249_RS06790: A4249_RS06790 - beta-ketoacyl-ACP synthase II, at 1,383,660 to 1,384,931 _RS06790 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -1 0 1at 1382.234 kb on - strand, within A4249_RS06780at 1382.694 kb on + strand, within A4249_RS06785at 1382.694 kb on + strand, within A4249_RS06785at 1382.832 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.354 kb on + strand, within A4249_RS06785at 1383.531 kb on + strand, within A4249_RS06785at 1383.534 kb on + strand, within A4249_RS06785at 1383.535 kb on - strand, within A4249_RS06785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
remove
1,382,234 - A4249_RS06780 0.70 -0.4
1,382,694 + A4249_RS06785 0.17 +1.1
1,382,694 + A4249_RS06785 0.17 +1.7
1,382,832 + A4249_RS06785 0.29 -0.8
1,383,162 + A4249_RS06785 0.57 -0.3
1,383,162 + A4249_RS06785 0.57 -0.1
1,383,162 + A4249_RS06785 0.57 +0.7
1,383,163 - A4249_RS06785 0.57 -0.5
1,383,163 - A4249_RS06785 0.57 -0.3
1,383,163 - A4249_RS06785 0.57 +1.2
1,383,354 + A4249_RS06785 0.74 +0.4
1,383,531 + A4249_RS06785 0.89 +0.1
1,383,534 + A4249_RS06785 0.89 -0.1
1,383,535 - A4249_RS06785 0.89 -0.5

Or see this region's nucleotide sequence