Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03170 and A4249_RS03175 are separated by 334 nucleotides A4249_RS03175 and A4249_RS03180 are separated by 8 nucleotides A4249_RS03180 and A4249_RS03185 overlap by 1 nucleotides A4249_RS03185 and A4249_RS03190 overlap by 35 nucleotides A4249_RS03190 and A4249_RS03195 are separated by 199 nucleotides A4249_RS03195 and A4249_RS03200 are separated by 65 nucleotides
A4249_RS03170: A4249_RS03170 - hypothetical protein, at 669,026 to 669,226
_RS03170
A4249_RS03175: A4249_RS03175 - ParB N-terminal domain-containing protein, at 669,561 to 669,845
_RS03175
A4249_RS03180: A4249_RS03180 - hypothetical protein, at 669,854 to 670,186
_RS03180
A4249_RS03185: A4249_RS03185 - type IV secretory system conjugative DNA transfer family protein, at 670,186 to 672,042
_RS03185
A4249_RS03190: A4249_RS03190 - ATPase, T2SS/T4P/T4SS family, at 672,008 to 672,340
_RS03190
A4249_RS03195: A4249_RS03195 - toxin-antitoxin system, antitoxin component, at 672,540 to 672,839
_RS03195
A4249_RS03200: A4249_RS03200 - ammonium transporter family protein, at 672,905 to 673,132
_RS03200
Position (kb) 670
671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 669.323 kb on + strand at 669.325 kb on - strand at 669.485 kb on - strand at 669.792 kb on + strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.793 kb on - strand, within A4249_RS03175 at 669.855 kb on + strand at 669.855 kb on + strand at 669.855 kb on + strand at 669.855 kb on + strand at 669.855 kb on + strand at 669.855 kb on + strand at 669.855 kb on + strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.856 kb on - strand at 669.916 kb on + strand, within A4249_RS03180 at 670.023 kb on + strand, within A4249_RS03180 at 670.023 kb on + strand, within A4249_RS03180 at 670.023 kb on + strand, within A4249_RS03180 at 670.023 kb on + strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.024 kb on - strand, within A4249_RS03180 at 670.065 kb on + strand, within A4249_RS03180 at 670.065 kb on + strand, within A4249_RS03180 at 670.065 kb on + strand, within A4249_RS03180 at 670.066 kb on - strand, within A4249_RS03180 at 670.454 kb on + strand, within A4249_RS03185 at 670.454 kb on + strand, within A4249_RS03185 at 670.457 kb on + strand, within A4249_RS03185 at 670.457 kb on + strand, within A4249_RS03185 at 670.457 kb on + strand, within A4249_RS03185 at 670.576 kb on - strand, within A4249_RS03185 at 670.631 kb on + strand, within A4249_RS03185 at 670.631 kb on + strand, within A4249_RS03185 at 670.631 kb on + strand, within A4249_RS03185 at 670.631 kb on + strand, within A4249_RS03185 at 670.632 kb on - strand, within A4249_RS03185 at 670.632 kb on - strand, within A4249_RS03185 at 670.632 kb on - strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.637 kb on + strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.638 kb on - strand, within A4249_RS03185 at 670.640 kb on + strand, within A4249_RS03185 at 670.640 kb on + strand, within A4249_RS03185 at 670.641 kb on - strand, within A4249_RS03185 at 670.641 kb on - strand, within A4249_RS03185 at 670.641 kb on - strand, within A4249_RS03185 at 670.745 kb on + strand, within A4249_RS03185 at 670.746 kb on - strand, within A4249_RS03185 at 670.746 kb on - strand, within A4249_RS03185 at 670.746 kb on - strand, within A4249_RS03185 at 670.946 kb on + strand, within A4249_RS03185 at 670.946 kb on + strand, within A4249_RS03185 at 670.946 kb on + strand, within A4249_RS03185 at 670.947 kb on - strand, within A4249_RS03185 at 670.947 kb on - strand, within A4249_RS03185 at 670.947 kb on - strand, within A4249_RS03185 at 670.991 kb on + strand, within A4249_RS03185 at 670.991 kb on + strand, within A4249_RS03185 at 670.992 kb on - strand, within A4249_RS03185 at 670.992 kb on - strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.159 kb on + strand, within A4249_RS03185 at 671.159 kb on + strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.514 kb on - strand, within A4249_RS03185 at 671.630 kb on + strand, within A4249_RS03185 at 671.630 kb on + strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.870 kb on + strand at 671.871 kb on - strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.874 kb on - strand at 671.874 kb on - strand at 671.874 kb on - strand at 672.261 kb on + strand, within A4249_RS03190 at 672.262 kb on - strand, within A4249_RS03190 at 672.262 kb on - strand, within A4249_RS03190 at 672.444 kb on - strand at 672.474 kb on + strand at 672.474 kb on + strand at 672.474 kb on + strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.549 kb on + strand at 672.549 kb on + strand at 672.549 kb on + strand at 672.550 kb on - strand at 672.550 kb on - strand at 672.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 669,323 + +1.1 669,325 - -0.4 669,485 - +0.4 669,792 + A4249_RS03175 0.81 -0.7 669,793 - A4249_RS03175 0.81 +0.1 669,793 - A4249_RS03175 0.81 -0.8 669,793 - A4249_RS03175 0.81 -0.0 669,793 - A4249_RS03175 0.81 -0.3 669,793 - A4249_RS03175 0.81 -0.3 669,793 - A4249_RS03175 0.81 -0.7 669,855 + +0.2 669,855 + +0.6 669,855 + +0.3 669,855 + +0.9 669,855 + -0.3 669,855 + +0.8 669,855 + +1.1 669,856 - -0.3 669,856 - +0.5 669,856 - +1.3 669,856 - -0.0 669,856 - -1.0 669,856 - -0.9 669,856 - +0.3 669,856 - -0.4 669,856 - +0.1 669,856 - +0.3 669,916 + A4249_RS03180 0.19 +0.1 670,023 + A4249_RS03180 0.51 -0.4 670,023 + A4249_RS03180 0.51 -0.4 670,023 + A4249_RS03180 0.51 -0.8 670,023 + A4249_RS03180 0.51 +0.1 670,024 - A4249_RS03180 0.51 +0.4 670,024 - A4249_RS03180 0.51 +0.2 670,024 - A4249_RS03180 0.51 -0.1 670,024 - A4249_RS03180 0.51 +0.5 670,024 - A4249_RS03180 0.51 +0.5 670,024 - A4249_RS03180 0.51 +1.0 670,065 + A4249_RS03180 0.63 -1.6 670,065 + A4249_RS03180 0.63 -0.2 670,065 + A4249_RS03180 0.63 -0.6 670,066 - A4249_RS03180 0.64 +0.3 670,454 + A4249_RS03185 0.14 +1.6 670,454 + A4249_RS03185 0.14 -0.3 670,457 + A4249_RS03185 0.15 +1.0 670,457 + A4249_RS03185 0.15 -0.1 670,457 + A4249_RS03185 0.15 -1.1 670,576 - A4249_RS03185 0.21 -0.1 670,631 + A4249_RS03185 0.24 +0.4 670,631 + A4249_RS03185 0.24 +0.1 670,631 + A4249_RS03185 0.24 -0.1 670,631 + A4249_RS03185 0.24 -0.5 670,632 - A4249_RS03185 0.24 -0.2 670,632 - A4249_RS03185 0.24 +1.2 670,632 - A4249_RS03185 0.24 +0.7 670,637 + A4249_RS03185 0.24 -0.2 670,637 + A4249_RS03185 0.24 -0.7 670,637 + A4249_RS03185 0.24 -0.6 670,637 + A4249_RS03185 0.24 -0.6 670,637 + A4249_RS03185 0.24 +0.3 670,637 + A4249_RS03185 0.24 +0.4 670,637 + A4249_RS03185 0.24 -2.3 670,637 + A4249_RS03185 0.24 -0.1 670,638 - A4249_RS03185 0.24 +0.6 670,638 - A4249_RS03185 0.24 +0.2 670,638 - A4249_RS03185 0.24 +0.2 670,638 - A4249_RS03185 0.24 +0.4 670,638 - A4249_RS03185 0.24 +0.4 670,638 - A4249_RS03185 0.24 -0.7 670,638 - A4249_RS03185 0.24 -0.3 670,638 - A4249_RS03185 0.24 +0.2 670,638 - A4249_RS03185 0.24 +0.9 670,638 - A4249_RS03185 0.24 -0.4 670,638 - A4249_RS03185 0.24 -0.3 670,638 - A4249_RS03185 0.24 +1.4 670,638 - A4249_RS03185 0.24 -0.4 670,640 + A4249_RS03185 0.24 +0.2 670,640 + A4249_RS03185 0.24 -0.0 670,641 - A4249_RS03185 0.25 -0.2 670,641 - A4249_RS03185 0.25 +0.1 670,641 - A4249_RS03185 0.25 -0.2 670,745 + A4249_RS03185 0.30 +0.6 670,746 - A4249_RS03185 0.30 +0.8 670,746 - A4249_RS03185 0.30 +0.0 670,746 - A4249_RS03185 0.30 -0.2 670,946 + A4249_RS03185 0.41 -0.1 670,946 + A4249_RS03185 0.41 +0.3 670,946 + A4249_RS03185 0.41 +0.2 670,947 - A4249_RS03185 0.41 +0.2 670,947 - A4249_RS03185 0.41 -0.3 670,947 - A4249_RS03185 0.41 +0.4 670,991 + A4249_RS03185 0.43 -0.3 670,991 + A4249_RS03185 0.43 +1.1 670,992 - A4249_RS03185 0.43 -0.2 670,992 - A4249_RS03185 0.43 +1.3 671,118 + A4249_RS03185 0.50 -0.1 671,118 + A4249_RS03185 0.50 -0.5 671,118 + A4249_RS03185 0.50 -0.0 671,118 + A4249_RS03185 0.50 -0.2 671,118 + A4249_RS03185 0.50 +0.9 671,119 - A4249_RS03185 0.50 +0.3 671,119 - A4249_RS03185 0.50 +0.0 671,119 - A4249_RS03185 0.50 -0.1 671,119 - A4249_RS03185 0.50 -0.6 671,159 + A4249_RS03185 0.52 +0.6 671,159 + A4249_RS03185 0.52 -1.2 671,160 - A4249_RS03185 0.52 +0.1 671,160 - A4249_RS03185 0.52 +0.3 671,160 - A4249_RS03185 0.52 -0.2 671,160 - A4249_RS03185 0.52 +0.7 671,160 - A4249_RS03185 0.52 +0.1 671,249 + A4249_RS03185 0.57 -1.3 671,249 + A4249_RS03185 0.57 +0.3 671,249 + A4249_RS03185 0.57 +0.0 671,250 - A4249_RS03185 0.57 -0.1 671,250 - A4249_RS03185 0.57 -1.6 671,250 - A4249_RS03185 0.57 -0.0 671,514 - A4249_RS03185 0.72 -1.7 671,630 + A4249_RS03185 0.78 -0.4 671,630 + A4249_RS03185 0.78 +0.2 671,631 - A4249_RS03185 0.78 -0.6 671,631 - A4249_RS03185 0.78 -0.6 671,631 - A4249_RS03185 0.78 -0.1 671,870 + -0.1 671,871 - +0.6 671,873 + -0.2 671,873 + +0.0 671,873 + -0.5 671,873 + -0.9 671,873 + -0.9 671,873 + -0.7 671,874 - +0.6 671,874 - -2.7 671,874 - +0.0 672,261 + A4249_RS03190 0.76 -3.3 672,262 - A4249_RS03190 0.76 +0.1 672,262 - A4249_RS03190 0.76 +0.3 672,444 - -0.6 672,474 + +1.0 672,474 + -2.1 672,474 + +0.1 672,475 - -0.3 672,475 - -0.9 672,475 - -1.6 672,475 - +0.9 672,475 - -1.3 672,549 + -0.3 672,549 + -0.4 672,549 + -0.3 672,550 - +0.6 672,550 - -0.4 672,550 - -1.2
Or see this region's nucleotide sequence