Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02870 and A4249_RS02875 overlap by 4 nucleotides A4249_RS02875 and A4249_RS02880 are separated by 44 nucleotides A4249_RS02880 and A4249_RS02885 are separated by 73 nucleotides
A4249_RS02870: A4249_RS02870 - translocation/assembly module TamB domain-containing protein, at 607,111 to 611,349
_RS02870
A4249_RS02875: A4249_RS02875 - autotransporter assembly complex family protein, at 611,346 to 613,136
_RS02875
A4249_RS02880: A4249_RS02880 - hypothetical protein, at 613,181 to 613,444
_RS02880
A4249_RS02885: A4249_RS02885 - CaiB/BaiF CoA-transferase family protein, at 613,518 to 614,600
_RS02885
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.386 kb on + strand, within A4249_RS02870 at 610.387 kb on - strand, within A4249_RS02870 at 610.805 kb on + strand, within A4249_RS02870 at 610.985 kb on + strand at 611.075 kb on - strand at 611.093 kb on + strand at 611.093 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.177 kb on + strand at 611.178 kb on - strand at 611.178 kb on - strand at 611.178 kb on - strand at 611.178 kb on - strand at 611.180 kb on + strand at 611.341 kb on - strand at 611.341 kb on - strand at 611.371 kb on + strand at 611.371 kb on + strand at 611.371 kb on + strand at 611.371 kb on + strand at 611.371 kb on + strand at 611.371 kb on + strand at 611.372 kb on - strand at 611.372 kb on - strand at 611.372 kb on - strand at 611.372 kb on - strand at 611.452 kb on + strand at 611.452 kb on + strand at 611.452 kb on + strand at 611.453 kb on - strand at 611.453 kb on - strand at 611.453 kb on - strand at 611.654 kb on - strand, within A4249_RS02875 at 611.654 kb on - strand, within A4249_RS02875 at 611.785 kb on + strand, within A4249_RS02875 at 611.912 kb on + strand, within A4249_RS02875 at 611.913 kb on - strand, within A4249_RS02875 at 611.913 kb on - strand, within A4249_RS02875 at 611.914 kb on + strand, within A4249_RS02875 at 611.914 kb on + strand, within A4249_RS02875 at 611.914 kb on + strand, within A4249_RS02875 at 611.914 kb on + strand, within A4249_RS02875 at 611.914 kb on + strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.915 kb on - strand, within A4249_RS02875 at 611.943 kb on + strand, within A4249_RS02875 at 612.008 kb on - strand, within A4249_RS02875 at 612.034 kb on + strand, within A4249_RS02875 at 612.034 kb on + strand, within A4249_RS02875 at 612.035 kb on - strand, within A4249_RS02875 at 612.043 kb on + strand, within A4249_RS02875 at 612.043 kb on + strand, within A4249_RS02875 at 612.043 kb on + strand, within A4249_RS02875 at 612.044 kb on - strand, within A4249_RS02875 at 612.044 kb on - strand, within A4249_RS02875 at 612.103 kb on + strand, within A4249_RS02875 at 612.103 kb on + strand, within A4249_RS02875 at 612.104 kb on - strand, within A4249_RS02875 at 612.421 kb on + strand, within A4249_RS02875 at 612.422 kb on - strand, within A4249_RS02875 at 612.439 kb on - strand, within A4249_RS02875 at 612.475 kb on + strand, within A4249_RS02875 at 612.476 kb on - strand, within A4249_RS02875 at 612.589 kb on + strand, within A4249_RS02875 at 612.590 kb on - strand, within A4249_RS02875 at 612.627 kb on + strand, within A4249_RS02875 at 612.628 kb on - strand, within A4249_RS02875 at 612.658 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.901 kb on + strand, within A4249_RS02875 at 612.902 kb on - strand, within A4249_RS02875 at 612.902 kb on - strand, within A4249_RS02875 at 612.904 kb on + strand, within A4249_RS02875 at 612.904 kb on + strand, within A4249_RS02875 at 612.905 kb on - strand, within A4249_RS02875 at 613.122 kb on - strand at 613.185 kb on + strand at 613.185 kb on + strand at 613.185 kb on + strand at 613.185 kb on + strand at 613.186 kb on - strand at 613.186 kb on - strand at 613.186 kb on - strand at 613.186 kb on - strand at 613.186 kb on - strand at 613.249 kb on + strand, within A4249_RS02880 at 613.250 kb on - strand, within A4249_RS02880 at 613.250 kb on - strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.353 kb on + strand, within A4249_RS02880 at 613.354 kb on - strand, within A4249_RS02880 at 613.354 kb on - strand, within A4249_RS02880 at 613.484 kb on + strand at 613.557 kb on + strand at 613.558 kb on - strand at 613.558 kb on - strand at 613.558 kb on - strand at 613.558 kb on - strand at 613.558 kb on - strand at 613.558 kb on - strand at 613.593 kb on + strand at 613.593 kb on + strand at 613.593 kb on + strand at 613.593 kb on + strand at 613.594 kb on - strand at 613.804 kb on + strand, within A4249_RS02885 at 613.804 kb on + strand, within A4249_RS02885 at 613.805 kb on - strand, within A4249_RS02885 at 613.805 kb on - strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.856 kb on - strand, within A4249_RS02885 at 613.856 kb on - strand, within A4249_RS02885 at 613.909 kb on + strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.919 kb on - strand, within A4249_RS02885 at 614.130 kb on + strand, within A4249_RS02885 at 614.131 kb on - strand, within A4249_RS02885 at 614.131 kb on - strand, within A4249_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 610,386 + A4249_RS02870 0.77 +0.8 610,387 - A4249_RS02870 0.77 +0.1 610,805 + A4249_RS02870 0.87 +0.4 610,985 + +0.3 611,075 - +1.1 611,093 + -0.9 611,093 + +1.3 611,177 + +1.7 611,177 + +2.3 611,177 + -0.4 611,177 + +0.5 611,177 + +0.9 611,177 + -0.0 611,177 + +1.7 611,177 + +0.9 611,178 - -0.1 611,178 - +1.9 611,178 - -0.7 611,178 - +0.4 611,180 + +0.7 611,341 - -0.5 611,341 - -0.1 611,371 + +0.1 611,371 + +0.2 611,371 + -1.3 611,371 + -0.3 611,371 + +2.7 611,371 + +0.1 611,372 - -1.1 611,372 - -0.3 611,372 - -0.8 611,372 - +1.1 611,452 + -0.9 611,452 + +0.2 611,452 + -0.3 611,453 - +0.4 611,453 - +1.5 611,453 - -0.8 611,654 - A4249_RS02875 0.17 +0.7 611,654 - A4249_RS02875 0.17 +0.7 611,785 + A4249_RS02875 0.25 +2.1 611,912 + A4249_RS02875 0.32 -1.4 611,913 - A4249_RS02875 0.32 +0.1 611,913 - A4249_RS02875 0.32 -0.3 611,914 + A4249_RS02875 0.32 -0.1 611,914 + A4249_RS02875 0.32 +0.4 611,914 + A4249_RS02875 0.32 +2.7 611,914 + A4249_RS02875 0.32 +0.7 611,914 + A4249_RS02875 0.32 -0.9 611,915 - A4249_RS02875 0.32 -0.4 611,915 - A4249_RS02875 0.32 +0.8 611,915 - A4249_RS02875 0.32 +2.7 611,915 - A4249_RS02875 0.32 -0.3 611,915 - A4249_RS02875 0.32 -0.1 611,915 - A4249_RS02875 0.32 -1.0 611,943 + A4249_RS02875 0.33 -0.3 612,008 - A4249_RS02875 0.37 +0.4 612,034 + A4249_RS02875 0.38 +1.2 612,034 + A4249_RS02875 0.38 -0.9 612,035 - A4249_RS02875 0.38 +1.5 612,043 + A4249_RS02875 0.39 -0.6 612,043 + A4249_RS02875 0.39 -0.4 612,043 + A4249_RS02875 0.39 +0.1 612,044 - A4249_RS02875 0.39 +0.1 612,044 - A4249_RS02875 0.39 +1.0 612,103 + A4249_RS02875 0.42 +0.6 612,103 + A4249_RS02875 0.42 +1.4 612,104 - A4249_RS02875 0.42 -0.9 612,421 + A4249_RS02875 0.60 +0.3 612,422 - A4249_RS02875 0.60 -0.1 612,439 - A4249_RS02875 0.61 -0.0 612,475 + A4249_RS02875 0.63 -0.5 612,476 - A4249_RS02875 0.63 -0.1 612,589 + A4249_RS02875 0.69 +1.1 612,590 - A4249_RS02875 0.69 -0.1 612,627 + A4249_RS02875 0.72 +0.8 612,628 - A4249_RS02875 0.72 -0.1 612,658 + A4249_RS02875 0.73 +0.9 612,901 + A4249_RS02875 0.87 -0.0 612,901 + A4249_RS02875 0.87 -0.3 612,901 + A4249_RS02875 0.87 -1.1 612,901 + A4249_RS02875 0.87 +1.9 612,901 + A4249_RS02875 0.87 +1.7 612,901 + A4249_RS02875 0.87 -0.3 612,901 + A4249_RS02875 0.87 +0.7 612,902 - A4249_RS02875 0.87 -0.6 612,902 - A4249_RS02875 0.87 -0.3 612,904 + A4249_RS02875 0.87 -1.0 612,904 + A4249_RS02875 0.87 +0.0 612,905 - A4249_RS02875 0.87 +0.7 613,122 - +0.0 613,185 + -0.9 613,185 + -0.2 613,185 + -0.0 613,185 + +0.7 613,186 - +0.4 613,186 - -0.3 613,186 - -1.0 613,186 - -0.5 613,186 - +0.1 613,249 + A4249_RS02880 0.26 +0.3 613,250 - A4249_RS02880 0.26 -0.1 613,250 - A4249_RS02880 0.26 +2.7 613,353 + A4249_RS02880 0.65 +1.0 613,353 + A4249_RS02880 0.65 -1.8 613,353 + A4249_RS02880 0.65 -0.4 613,353 + A4249_RS02880 0.65 -0.6 613,353 + A4249_RS02880 0.65 -0.3 613,353 + A4249_RS02880 0.65 -0.8 613,353 + A4249_RS02880 0.65 -0.0 613,354 - A4249_RS02880 0.66 +0.0 613,354 - A4249_RS02880 0.66 -0.5 613,484 + +0.1 613,557 + -0.6 613,558 - +0.0 613,558 - -0.5 613,558 - -1.6 613,558 - -0.4 613,558 - -0.2 613,558 - +0.9 613,593 + -0.8 613,593 + -1.2 613,593 + -0.0 613,593 + +0.8 613,594 - +1.4 613,804 + A4249_RS02885 0.26 -0.1 613,804 + A4249_RS02885 0.26 +0.3 613,805 - A4249_RS02885 0.27 +0.1 613,805 - A4249_RS02885 0.27 -0.8 613,855 + A4249_RS02885 0.31 -0.9 613,855 + A4249_RS02885 0.31 +0.4 613,855 + A4249_RS02885 0.31 +1.0 613,856 - A4249_RS02885 0.31 -1.4 613,856 - A4249_RS02885 0.31 -0.5 613,909 + A4249_RS02885 0.36 -0.3 613,910 - A4249_RS02885 0.36 -0.9 613,910 - A4249_RS02885 0.36 -0.3 613,910 - A4249_RS02885 0.36 -0.3 613,910 - A4249_RS02885 0.36 -1.7 613,910 - A4249_RS02885 0.36 -0.2 613,918 + A4249_RS02885 0.37 -0.0 613,918 + A4249_RS02885 0.37 -0.2 613,918 + A4249_RS02885 0.37 -0.1 613,919 - A4249_RS02885 0.37 -0.2 614,130 + A4249_RS02885 0.57 -0.1 614,131 - A4249_RS02885 0.57 -0.7 614,131 - A4249_RS02885 0.57 -0.1
Or see this region's nucleotide sequence