Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02715 and A4249_RS02720 overlap by 4 nucleotides A4249_RS02720 and A4249_RS02725 overlap by 41 nucleotides A4249_RS02725 and A4249_RS02730 are separated by 218 nucleotides A4249_RS02730 and A4249_RS02735 are separated by 287 nucleotides
A4249_RS02715: A4249_RS02715 - M15 family metallopeptidase, at 578,192 to 578,575
_RS02715
A4249_RS02720: A4249_RS02720 - hypothetical protein, at 578,572 to 579,051
_RS02720
A4249_RS02725: A4249_RS02725 - hypothetical protein, at 579,011 to 579,193
_RS02725
A4249_RS02730: A4249_RS02730 - flagellin, at 579,412 to 580,230
_RS02730
A4249_RS02735: A4249_RS02735 - flagellin, at 580,518 to 581,261
_RS02735
Position (kb) 579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 578.447 kb on + strand, within A4249_RS02715 at 578.447 kb on + strand, within A4249_RS02715 at 578.447 kb on + strand, within A4249_RS02715 at 578.447 kb on + strand, within A4249_RS02715 at 578.447 kb on + strand, within A4249_RS02715 at 578.447 kb on + strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.448 kb on - strand, within A4249_RS02715 at 578.588 kb on + strand at 578.588 kb on + strand at 578.588 kb on + strand at 578.588 kb on + strand at 578.588 kb on + strand at 578.588 kb on + strand at 578.589 kb on - strand at 578.589 kb on - strand at 578.589 kb on - strand at 578.589 kb on - strand at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.824 kb on + strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 578.825 kb on - strand, within A4249_RS02720 at 579.080 kb on + strand, within A4249_RS02725 at 579.080 kb on + strand, within A4249_RS02725 at 579.080 kb on + strand, within A4249_RS02725 at 579.080 kb on + strand, within A4249_RS02725 at 579.080 kb on + strand, within A4249_RS02725 at 579.080 kb on + strand, within A4249_RS02725 at 579.081 kb on - strand, within A4249_RS02725 at 579.270 kb on + strand at 579.271 kb on - strand at 579.417 kb on + strand at 579.418 kb on - strand at 579.418 kb on - strand at 579.429 kb on + strand at 579.429 kb on + strand at 579.429 kb on + strand at 579.429 kb on + strand at 579.430 kb on - strand at 579.430 kb on - strand at 579.430 kb on - strand at 579.430 kb on - strand at 579.430 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.480 kb on + strand at 579.480 kb on + strand at 579.480 kb on + strand at 579.480 kb on + strand at 579.480 kb on + strand at 579.480 kb on + strand at 579.481 kb on - strand at 579.481 kb on - strand at 579.553 kb on + strand, within A4249_RS02730 at 579.553 kb on + strand, within A4249_RS02730 at 579.553 kb on + strand, within A4249_RS02730 at 579.553 kb on + strand, within A4249_RS02730 at 579.553 kb on + strand, within A4249_RS02730 at 579.554 kb on - strand, within A4249_RS02730 at 579.554 kb on - strand, within A4249_RS02730 at 579.554 kb on - strand, within A4249_RS02730 at 579.554 kb on - strand, within A4249_RS02730 at 579.591 kb on + strand, within A4249_RS02730 at 579.592 kb on - strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.745 kb on + strand, within A4249_RS02730 at 579.746 kb on - strand, within A4249_RS02730 at 579.746 kb on - strand, within A4249_RS02730 at 579.746 kb on - strand, within A4249_RS02730 at 579.850 kb on - strand, within A4249_RS02730 at 579.850 kb on - strand, within A4249_RS02730 at 579.874 kb on + strand, within A4249_RS02730 at 579.874 kb on + strand, within A4249_RS02730 at 579.875 kb on - strand, within A4249_RS02730 at 580.228 kb on + strand at 580.228 kb on + strand at 580.228 kb on + strand at 580.228 kb on + strand at 580.228 kb on + strand at 580.229 kb on - strand at 580.229 kb on - strand at 580.229 kb on - strand at 580.397 kb on + strand at 580.398 kb on - strand at 580.403 kb on + strand at 580.445 kb on + strand at 580.445 kb on + strand at 580.445 kb on + strand at 580.446 kb on - strand at 580.446 kb on - strand at 580.709 kb on + strand, within A4249_RS02735 at 580.710 kb on - strand, within A4249_RS02735 at 580.710 kb on - strand, within A4249_RS02735 at 580.710 kb on - strand, within A4249_RS02735 at 580.710 kb on - strand, within A4249_RS02735 at 580.848 kb on + strand, within A4249_RS02735 at 580.848 kb on + strand, within A4249_RS02735 at 580.848 kb on + strand, within A4249_RS02735 at 580.849 kb on - strand, within A4249_RS02735 at 580.849 kb on - strand, within A4249_RS02735
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 578,447 + A4249_RS02715 0.66 -1.5 578,447 + A4249_RS02715 0.66 +2.0 578,447 + A4249_RS02715 0.66 -0.2 578,447 + A4249_RS02715 0.66 +0.5 578,447 + A4249_RS02715 0.66 -2.7 578,447 + A4249_RS02715 0.66 -0.4 578,448 - A4249_RS02715 0.67 -0.8 578,448 - A4249_RS02715 0.67 -0.8 578,448 - A4249_RS02715 0.67 -0.4 578,448 - A4249_RS02715 0.67 -0.2 578,448 - A4249_RS02715 0.67 -0.5 578,448 - A4249_RS02715 0.67 -0.5 578,448 - A4249_RS02715 0.67 -0.5 578,448 - A4249_RS02715 0.67 +0.7 578,588 + +0.0 578,588 + +0.1 578,588 + -0.2 578,588 + -0.6 578,588 + +0.1 578,588 + +1.3 578,589 - -0.3 578,589 - +0.0 578,589 - -0.6 578,589 - -0.7 578,824 + A4249_RS02720 0.53 -0.1 578,824 + A4249_RS02720 0.53 +0.8 578,824 + A4249_RS02720 0.53 +0.0 578,824 + A4249_RS02720 0.53 -0.7 578,824 + A4249_RS02720 0.53 +1.1 578,824 + A4249_RS02720 0.53 +0.5 578,824 + A4249_RS02720 0.53 -0.5 578,825 - A4249_RS02720 0.53 +0.7 578,825 - A4249_RS02720 0.53 -0.0 578,825 - A4249_RS02720 0.53 +0.1 578,825 - A4249_RS02720 0.53 +0.6 578,825 - A4249_RS02720 0.53 -0.1 578,825 - A4249_RS02720 0.53 +0.1 579,080 + A4249_RS02725 0.38 +0.1 579,080 + A4249_RS02725 0.38 +0.7 579,080 + A4249_RS02725 0.38 -0.7 579,080 + A4249_RS02725 0.38 +0.7 579,080 + A4249_RS02725 0.38 -0.0 579,080 + A4249_RS02725 0.38 -0.6 579,081 - A4249_RS02725 0.38 +0.5 579,270 + +1.0 579,271 - +0.0 579,417 + +2.2 579,418 - -1.6 579,418 - +0.4 579,429 + +0.2 579,429 + +0.1 579,429 + -0.3 579,429 + -1.2 579,430 - -0.0 579,430 - -0.9 579,430 - -0.4 579,430 - -0.3 579,430 - +0.1 579,436 + -0.7 579,437 - -0.1 579,480 + -0.5 579,480 + -0.1 579,480 + -0.2 579,480 + +0.6 579,480 + +0.5 579,480 + -0.4 579,481 - +1.3 579,481 - +0.8 579,553 + A4249_RS02730 0.17 -0.2 579,553 + A4249_RS02730 0.17 +1.0 579,553 + A4249_RS02730 0.17 -0.1 579,553 + A4249_RS02730 0.17 +0.2 579,553 + A4249_RS02730 0.17 -1.9 579,554 - A4249_RS02730 0.17 +0.0 579,554 - A4249_RS02730 0.17 -0.6 579,554 - A4249_RS02730 0.17 -0.4 579,554 - A4249_RS02730 0.17 +1.0 579,591 + A4249_RS02730 0.22 -0.6 579,592 - A4249_RS02730 0.22 -1.7 579,745 + A4249_RS02730 0.41 -0.4 579,745 + A4249_RS02730 0.41 -1.3 579,745 + A4249_RS02730 0.41 +0.4 579,745 + A4249_RS02730 0.41 +0.1 579,745 + A4249_RS02730 0.41 +0.4 579,745 + A4249_RS02730 0.41 +0.7 579,746 - A4249_RS02730 0.41 +0.5 579,746 - A4249_RS02730 0.41 +0.8 579,746 - A4249_RS02730 0.41 -0.6 579,850 - A4249_RS02730 0.53 -0.1 579,850 - A4249_RS02730 0.53 +0.8 579,874 + A4249_RS02730 0.56 -1.0 579,874 + A4249_RS02730 0.56 -0.0 579,875 - A4249_RS02730 0.57 -0.0 580,228 + -0.1 580,228 + +0.5 580,228 + +0.1 580,228 + +0.5 580,228 + -0.6 580,229 - -2.2 580,229 - -0.7 580,229 - +0.2 580,397 + -0.4 580,398 - -2.1 580,403 + +0.9 580,445 + +0.2 580,445 + -0.5 580,445 + +2.1 580,446 - -0.1 580,446 - +0.5 580,709 + A4249_RS02735 0.26 +0.3 580,710 - A4249_RS02735 0.26 -1.6 580,710 - A4249_RS02735 0.26 -0.2 580,710 - A4249_RS02735 0.26 -1.0 580,710 - A4249_RS02735 0.26 +0.1 580,848 + A4249_RS02735 0.44 -1.3 580,848 + A4249_RS02735 0.44 +0.1 580,848 + A4249_RS02735 0.44 -0.2 580,849 - A4249_RS02735 0.44 -0.3 580,849 - A4249_RS02735 0.44 -0.1
Or see this region's nucleotide sequence